Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0622 and Atu0623 are separated by 70 nucleotides Atu0623 and Atu0624 are separated by 82 nucleotides Atu0624 and Atu8134 are separated by 95 nucleotides Atu8134 and Atu0626 are separated by 149 nucleotides
Atu0622: Atu0622 - metallo-beta-lactamase superfamily protein, at 611,204 to 612,187
Atu0622
Atu0623: Atu0623 - hypothetical protein, at 612,258 to 612,416
Atu0623
Atu0624: Atu0624 - inosine-5`-monophosphate dehydrogenase, at 612,499 to 613,872
Atu0624
Atu8134: Atu8134 - hypothetical protein, at 613,968 to 614,387
Atu8134
Atu0626: Atu0626 - alcohol dehydrogenase, at 614,537 to 615,565
Atu0626
Position (kb) 612
613
614 Strain fitness (log2 ratio) -1
0
1 at 611.515 kb on + strand, within Atu0622 at 611.515 kb on + strand, within Atu0622 at 611.645 kb on + strand, within Atu0622 at 611.660 kb on - strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.764 kb on - strand, within Atu0622 at 611.764 kb on - strand, within Atu0622 at 611.764 kb on - strand, within Atu0622 at 611.789 kb on + strand, within Atu0622 at 611.809 kb on - strand, within Atu0622 at 611.820 kb on - strand, within Atu0622 at 611.888 kb on + strand, within Atu0622 at 611.971 kb on + strand, within Atu0622 at 612.116 kb on + strand at 612.139 kb on + strand at 612.181 kb on + strand at 614.009 kb on + strand at 614.048 kb on - strand, within Atu8134 at 614.077 kb on + strand, within Atu8134 at 614.077 kb on - strand, within Atu8134 at 614.077 kb on - strand, within Atu8134 at 614.182 kb on - strand, within Atu8134 at 614.232 kb on + strand, within Atu8134 at 614.232 kb on + strand, within Atu8134 at 614.286 kb on + strand, within Atu8134 at 614.305 kb on + strand, within Atu8134 at 614.329 kb on + strand, within Atu8134 at 614.479 kb on + strand at 614.655 kb on - strand, within Atu0626 at 614.671 kb on + strand, within Atu0626 at 614.775 kb on + strand, within Atu0626 at 614.783 kb on - strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.817 kb on - strand, within Atu0626 at 614.817 kb on - strand, within Atu0626 at 614.828 kb on - strand, within Atu0626 at 614.867 kb on - strand, within Atu0626
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 611,515 + Atu0622 0.32 +0.1 611,515 + Atu0622 0.32 -0.0 611,645 + Atu0622 0.45 -0.0 611,660 - Atu0622 0.46 -0.0 611,756 + Atu0622 0.56 +0.0 611,756 + Atu0622 0.56 +0.3 611,756 + Atu0622 0.56 -0.4 611,756 + Atu0622 0.56 -0.1 611,756 + Atu0622 0.56 -1.7 611,764 - Atu0622 0.57 -0.4 611,764 - Atu0622 0.57 -0.7 611,764 - Atu0622 0.57 -0.4 611,789 + Atu0622 0.59 -0.0 611,809 - Atu0622 0.61 +0.3 611,820 - Atu0622 0.63 -0.2 611,888 + Atu0622 0.70 -0.4 611,971 + Atu0622 0.78 -0.3 612,116 + +0.0 612,139 + -0.2 612,181 + +0.0 614,009 + +0.2 614,048 - Atu8134 0.19 +0.0 614,077 + Atu8134 0.26 +0.1 614,077 - Atu8134 0.26 +0.3 614,077 - Atu8134 0.26 +0.3 614,182 - Atu8134 0.51 +0.1 614,232 + Atu8134 0.63 +0.0 614,232 + Atu8134 0.63 +0.2 614,286 + Atu8134 0.76 -0.2 614,305 + Atu8134 0.80 -0.7 614,329 + Atu8134 0.86 +0.4 614,479 + -0.4 614,655 - Atu0626 0.11 +0.1 614,671 + Atu0626 0.13 +0.3 614,775 + Atu0626 0.23 -1.6 614,783 - Atu0626 0.24 +0.0 614,809 + Atu0626 0.26 -1.1 614,809 + Atu0626 0.26 -0.1 614,809 + Atu0626 0.26 -1.1 614,809 + Atu0626 0.26 -0.1 614,817 - Atu0626 0.27 +0.1 614,817 - Atu0626 0.27 -0.4 614,828 - Atu0626 0.28 -0.5 614,867 - Atu0626 0.32 -0.0
Or see this region's nucleotide sequence