Strain Fitness in Agrobacterium fabrum C58 around Atu0523

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0521 and Atu0522 are separated by 14 nucleotidesAtu0522 and Atu0523 are separated by 108 nucleotidesAtu0523 and Atu0524 are separated by 421 nucleotides Atu0521: Atu0521 - methyl-accepting chemotaxis protein, at 511,047 to 511,592 Atu0521 Atu0522: Atu0522 - hypothetical protein, at 511,607 to 511,990 Atu0522 Atu0523: Atu0523 - flagellar M-ring protein, at 512,099 to 513,799 Atu0523 Atu0524: Atu0524 - transcriptional regulator, LuxR family, at 514,221 to 514,901 Atu0524 Position (kb) 512 513 514Strain fitness (log2 ratio) -2 -1 0 1at 511.099 kb on - strandat 511.099 kb on - strandat 511.164 kb on - strand, within Atu0521at 511.166 kb on + strand, within Atu0521at 511.198 kb on - strand, within Atu0521at 511.203 kb on - strand, within Atu0521at 511.205 kb on + strand, within Atu0521at 511.241 kb on + strand, within Atu0521at 511.241 kb on + strand, within Atu0521at 511.282 kb on + strand, within Atu0521at 511.365 kb on + strand, within Atu0521at 511.443 kb on + strand, within Atu0521at 511.445 kb on - strand, within Atu0521at 511.473 kb on + strand, within Atu0521at 511.507 kb on - strand, within Atu0521at 511.516 kb on + strand, within Atu0521at 511.564 kb on - strandat 511.564 kb on - strandat 511.637 kb on - strandat 511.637 kb on - strandat 511.736 kb on - strand, within Atu0522at 511.743 kb on + strand, within Atu0522at 511.788 kb on + strand, within Atu0522at 511.789 kb on - strand, within Atu0522at 511.790 kb on - strand, within Atu0522at 511.806 kb on + strand, within Atu0522at 511.850 kb on + strand, within Atu0522at 511.860 kb on + strand, within Atu0522at 511.871 kb on - strand, within Atu0522at 511.891 kb on + strand, within Atu0522at 511.992 kb on - strandat 511.995 kb on + strandat 512.010 kb on + strandat 512.057 kb on + strandat 512.075 kb on + strandat 512.091 kb on - strandat 512.091 kb on - strandat 512.099 kb on - strandat 512.144 kb on + strandat 512.162 kb on + strandat 512.209 kb on + strandat 512.267 kb on + strandat 512.362 kb on - strand, within Atu0523at 512.450 kb on - strand, within Atu0523at 512.469 kb on + strand, within Atu0523at 512.590 kb on - strand, within Atu0523at 512.636 kb on + strand, within Atu0523at 512.708 kb on - strand, within Atu0523at 512.785 kb on - strand, within Atu0523at 512.911 kb on + strand, within Atu0523at 512.911 kb on + strand, within Atu0523at 512.919 kb on - strand, within Atu0523at 512.919 kb on - strand, within Atu0523at 512.933 kb on + strand, within Atu0523at 512.941 kb on - strand, within Atu0523at 512.941 kb on - strand, within Atu0523at 512.941 kb on - strand, within Atu0523at 513.046 kb on + strand, within Atu0523at 513.177 kb on - strand, within Atu0523at 513.178 kb on - strand, within Atu0523at 513.195 kb on - strand, within Atu0523at 513.230 kb on - strand, within Atu0523at 513.253 kb on + strand, within Atu0523at 513.253 kb on + strand, within Atu0523at 513.253 kb on + strand, within Atu0523at 513.323 kb on + strand, within Atu0523at 513.327 kb on + strand, within Atu0523at 513.355 kb on - strand, within Atu0523at 513.486 kb on + strand, within Atu0523at 513.494 kb on - strand, within Atu0523at 513.494 kb on - strand, within Atu0523at 513.603 kb on - strand, within Atu0523at 513.618 kb on - strand, within Atu0523at 513.720 kb on + strandat 513.724 kb on + strandat 513.734 kb on + strandat 513.734 kb on + strandat 513.915 kb on + strandat 514.123 kb on - strandat 514.150 kb on + strandat 514.217 kb on + strandat 514.223 kb on + strandat 514.231 kb on - strandat 514.267 kb on - strandat 514.305 kb on - strand, within Atu0524at 514.305 kb on - strand, within Atu0524at 514.426 kb on + strand, within Atu0524at 514.516 kb on + strand, within Atu0524at 514.531 kb on + strand, within Atu0524at 514.561 kb on + strand, within Atu0524at 514.569 kb on - strand, within Atu0524at 514.750 kb on - strand, within Atu0524at 514.757 kb on + strand, within Atu0524

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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511,099 - +0.2
511,099 - -0.1
511,164 - Atu0521 0.21 -0.1
511,166 + Atu0521 0.22 -0.4
511,198 - Atu0521 0.28 +0.7
511,203 - Atu0521 0.29 -0.1
511,205 + Atu0521 0.29 -0.0
511,241 + Atu0521 0.36 +0.1
511,241 + Atu0521 0.36 -1.1
511,282 + Atu0521 0.43 -0.2
511,365 + Atu0521 0.58 +0.1
511,443 + Atu0521 0.73 -0.4
511,445 - Atu0521 0.73 +0.1
511,473 + Atu0521 0.78 +0.4
511,507 - Atu0521 0.84 -1.2
511,516 + Atu0521 0.86 +0.4
511,564 - +0.0
511,564 - -0.2
511,637 - +0.6
511,637 - +0.2
511,736 - Atu0522 0.34 -1.9
511,743 + Atu0522 0.35 -0.2
511,788 + Atu0522 0.47 +0.5
511,789 - Atu0522 0.47 +0.3
511,790 - Atu0522 0.48 -0.1
511,806 + Atu0522 0.52 -0.2
511,850 + Atu0522 0.63 -0.1
511,860 + Atu0522 0.66 +0.0
511,871 - Atu0522 0.69 +0.1
511,891 + Atu0522 0.74 -0.7
511,992 - +0.9
511,995 + +0.5
512,010 + -0.9
512,057 + +0.6
512,075 + +0.6
512,091 - +0.1
512,091 - +0.5
512,099 - +0.3
512,144 + -0.3
512,162 + +0.4
512,209 + +0.5
512,267 + +0.4
512,362 - Atu0523 0.15 +0.5
512,450 - Atu0523 0.21 +0.0
512,469 + Atu0523 0.22 +0.5
512,590 - Atu0523 0.29 +0.2
512,636 + Atu0523 0.32 +0.6
512,708 - Atu0523 0.36 +0.3
512,785 - Atu0523 0.40 +0.1
512,911 + Atu0523 0.48 +0.3
512,911 + Atu0523 0.48 +0.3
512,919 - Atu0523 0.48 -0.2
512,919 - Atu0523 0.48 +0.7
512,933 + Atu0523 0.49 +0.2
512,941 - Atu0523 0.50 +0.1
512,941 - Atu0523 0.50 +0.9
512,941 - Atu0523 0.50 +0.6
513,046 + Atu0523 0.56 +0.5
513,177 - Atu0523 0.63 +0.9
513,178 - Atu0523 0.63 -0.8
513,195 - Atu0523 0.64 +0.7
513,230 - Atu0523 0.66 +0.9
513,253 + Atu0523 0.68 +0.2
513,253 + Atu0523 0.68 +0.3
513,253 + Atu0523 0.68 -0.0
513,323 + Atu0523 0.72 +0.2
513,327 + Atu0523 0.72 +0.3
513,355 - Atu0523 0.74 -0.0
513,486 + Atu0523 0.82 +0.2
513,494 - Atu0523 0.82 -0.0
513,494 - Atu0523 0.82 +0.3
513,603 - Atu0523 0.88 +1.0
513,618 - Atu0523 0.89 +1.5
513,720 + +0.3
513,724 + +0.4
513,734 + +1.1
513,734 + -0.0
513,915 + -0.0
514,123 - -0.0
514,150 + -0.3
514,217 + -0.8
514,223 + +0.5
514,231 - -0.7
514,267 - -0.4
514,305 - Atu0524 0.12 -0.8
514,305 - Atu0524 0.12 -0.8
514,426 + Atu0524 0.30 +0.3
514,516 + Atu0524 0.43 -0.4
514,531 + Atu0524 0.46 -0.2
514,561 + Atu0524 0.50 +0.0
514,569 - Atu0524 0.51 -0.5
514,750 - Atu0524 0.78 -0.0
514,757 + Atu0524 0.79 -0.1

Or see this region's nucleotide sequence