Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0479 and Atu0480 are separated by 27 nucleotides Atu0480 and Atu0481 are separated by 377 nucleotides
Atu0479: Atu0479 - ABC transporter, substrate binding protein (amino acid), at 467,742 to 468,503
Atu0479
Atu0480: Atu0480 - polysaccharide biosynthesis protein, at 468,531 to 469,733
Atu0480
Atu0481: Atu0481 - exopolysaccharide production protein, at 470,111 to 471,406
Atu0481
Position (kb) 468
469
470 Strain fitness (log2 ratio) -1
0
1 at 467.779 kb on - strand at 467.881 kb on - strand, within Atu0479 at 467.934 kb on + strand, within Atu0479 at 467.940 kb on + strand, within Atu0479 at 468.016 kb on + strand, within Atu0479 at 468.018 kb on + strand, within Atu0479 at 468.026 kb on + strand, within Atu0479 at 468.063 kb on - strand, within Atu0479 at 468.202 kb on - strand, within Atu0479 at 468.209 kb on - strand, within Atu0479 at 468.225 kb on - strand, within Atu0479 at 468.261 kb on - strand, within Atu0479 at 468.338 kb on - strand, within Atu0479 at 468.350 kb on - strand, within Atu0479 at 468.532 kb on + strand at 468.727 kb on - strand, within Atu0480 at 468.813 kb on - strand, within Atu0480 at 468.829 kb on + strand, within Atu0480 at 468.907 kb on - strand, within Atu0480 at 468.914 kb on + strand, within Atu0480 at 468.935 kb on - strand, within Atu0480 at 469.034 kb on - strand, within Atu0480 at 469.063 kb on - strand, within Atu0480 at 469.108 kb on + strand, within Atu0480 at 469.108 kb on + strand, within Atu0480 at 469.108 kb on + strand, within Atu0480 at 469.116 kb on - strand, within Atu0480 at 469.239 kb on + strand, within Atu0480 at 469.249 kb on + strand, within Atu0480 at 469.257 kb on - strand, within Atu0480 at 469.257 kb on - strand, within Atu0480 at 469.257 kb on - strand, within Atu0480 at 469.262 kb on - strand, within Atu0480 at 469.393 kb on + strand, within Atu0480 at 469.401 kb on - strand, within Atu0480 at 469.421 kb on + strand, within Atu0480 at 469.535 kb on - strand, within Atu0480 at 469.535 kb on - strand, within Atu0480 at 469.540 kb on - strand, within Atu0480 at 469.562 kb on + strand, within Atu0480 at 469.615 kb on + strand at 469.715 kb on - strand at 469.798 kb on + strand at 469.886 kb on + strand at 469.958 kb on - strand at 469.975 kb on + strand at 470.012 kb on + strand at 470.067 kb on + strand at 470.070 kb on - strand at 470.101 kb on - strand at 470.130 kb on - strand at 470.134 kb on + strand at 470.134 kb on + strand at 470.144 kb on + strand at 470.149 kb on + strand at 470.316 kb on - strand, within Atu0481 at 470.337 kb on - strand, within Atu0481 at 470.349 kb on - strand, within Atu0481 at 470.406 kb on + strand, within Atu0481 at 470.467 kb on - strand, within Atu0481 at 470.562 kb on + strand, within Atu0481 at 470.592 kb on + strand, within Atu0481 at 470.597 kb on + strand, within Atu0481 at 470.612 kb on - strand, within Atu0481 at 470.703 kb on + strand, within Atu0481 at 470.703 kb on + strand, within Atu0481 at 470.711 kb on - strand, within Atu0481 at 470.711 kb on - strand, within Atu0481 at 470.729 kb on + strand, within Atu0481
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 467,779 - +0.7 467,881 - Atu0479 0.18 +1.6 467,934 + Atu0479 0.25 +0.4 467,940 + Atu0479 0.26 +0.4 468,016 + Atu0479 0.36 -0.2 468,018 + Atu0479 0.36 +0.2 468,026 + Atu0479 0.37 -0.8 468,063 - Atu0479 0.42 +0.7 468,202 - Atu0479 0.60 +0.6 468,209 - Atu0479 0.61 +0.3 468,225 - Atu0479 0.63 +0.9 468,261 - Atu0479 0.68 -0.7 468,338 - Atu0479 0.78 +1.2 468,350 - Atu0479 0.80 +0.6 468,532 + +0.2 468,727 - Atu0480 0.16 -0.4 468,813 - Atu0480 0.23 +0.2 468,829 + Atu0480 0.25 +0.5 468,907 - Atu0480 0.31 +0.1 468,914 + Atu0480 0.32 +0.8 468,935 - Atu0480 0.34 +0.3 469,034 - Atu0480 0.42 -0.2 469,063 - Atu0480 0.44 -0.9 469,108 + Atu0480 0.48 +0.4 469,108 + Atu0480 0.48 +0.4 469,108 + Atu0480 0.48 +0.2 469,116 - Atu0480 0.49 +0.1 469,239 + Atu0480 0.59 +0.2 469,249 + Atu0480 0.60 -0.4 469,257 - Atu0480 0.60 -0.0 469,257 - Atu0480 0.60 +0.4 469,257 - Atu0480 0.60 +0.8 469,262 - Atu0480 0.61 +0.5 469,393 + Atu0480 0.72 +0.2 469,401 - Atu0480 0.72 +0.7 469,421 + Atu0480 0.74 -0.0 469,535 - Atu0480 0.83 +0.5 469,535 - Atu0480 0.83 -0.1 469,540 - Atu0480 0.84 +1.2 469,562 + Atu0480 0.86 +0.8 469,615 + +0.2 469,715 - +0.6 469,798 + +0.5 469,886 + +0.4 469,958 - -0.1 469,975 + -0.4 470,012 + +0.1 470,067 + +1.1 470,070 - +0.1 470,101 - +0.2 470,130 - +0.7 470,134 + -0.1 470,134 + -0.0 470,144 + -0.1 470,149 + -0.2 470,316 - Atu0481 0.16 +0.1 470,337 - Atu0481 0.17 +0.2 470,349 - Atu0481 0.18 -0.1 470,406 + Atu0481 0.23 +0.6 470,467 - Atu0481 0.27 +0.4 470,562 + Atu0481 0.35 +1.0 470,592 + Atu0481 0.37 -0.0 470,597 + Atu0481 0.38 +0.1 470,612 - Atu0481 0.39 +0.2 470,703 + Atu0481 0.46 +0.0 470,703 + Atu0481 0.46 -0.6 470,711 - Atu0481 0.46 +0.1 470,711 - Atu0481 0.46 -0.1 470,729 + Atu0481 0.48 +0.1
Or see this region's nucleotide sequence