Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8124 and Atu0443 are separated by 498 nucleotides Atu0443 and Atu0444 are separated by 7 nucleotides Atu0444 and Atu0445 are separated by 209 nucleotides
Atu8124: Atu8124 - hypothetical protein, at 437,495 to 437,917
Atu8124
Atu0443: Atu0443 - putative phage repressor, at 438,416 to 439,111
Atu0443
Atu0444: Atu0444 - hypothetical protein, at 439,119 to 439,418
Atu0444
Atu0445: Atu0445 - hypothetical protein, at 439,628 to 440,125
Atu0445
Position (kb) 438
439
440 Strain fitness (log2 ratio) -1
0
1 at 437.493 kb on + strand at 437.501 kb on - strand at 437.631 kb on + strand, within Atu8124 at 437.631 kb on + strand, within Atu8124 at 437.631 kb on + strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.671 kb on - strand, within Atu8124 at 437.751 kb on + strand, within Atu8124 at 437.754 kb on - strand, within Atu8124 at 437.759 kb on - strand, within Atu8124 at 437.920 kb on + strand at 437.922 kb on - strand at 437.922 kb on - strand at 437.928 kb on - strand at 438.016 kb on + strand at 438.269 kb on + strand at 438.269 kb on + strand at 438.273 kb on + strand at 438.277 kb on - strand at 438.277 kb on - strand at 438.281 kb on - strand at 438.305 kb on + strand at 438.313 kb on - strand at 438.401 kb on - strand at 439.406 kb on - strand at 439.407 kb on + strand at 439.615 kb on - strand at 439.654 kb on + strand at 439.662 kb on - strand at 439.790 kb on + strand, within Atu0445 at 439.796 kb on - strand, within Atu0445 at 439.838 kb on - strand, within Atu0445 at 439.887 kb on + strand, within Atu0445 at 439.889 kb on + strand, within Atu0445 at 440.057 kb on + strand, within Atu0445 at 440.057 kb on + strand, within Atu0445 at 440.065 kb on - strand, within Atu0445 at 440.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 437,493 + -0.3 437,501 - -0.2 437,631 + Atu8124 0.32 +0.5 437,631 + Atu8124 0.32 +0.2 437,631 + Atu8124 0.32 +0.1 437,639 - Atu8124 0.34 -0.3 437,639 - Atu8124 0.34 +0.2 437,639 - Atu8124 0.34 +0.3 437,639 - Atu8124 0.34 +0.0 437,639 - Atu8124 0.34 +0.1 437,671 - Atu8124 0.42 +0.3 437,751 + Atu8124 0.61 +0.3 437,754 - Atu8124 0.61 +0.1 437,759 - Atu8124 0.62 -0.8 437,920 + +0.2 437,922 - -0.1 437,922 - +0.2 437,928 - +0.0 438,016 + +0.1 438,269 + -0.2 438,269 + +0.1 438,273 + +0.8 438,277 - +0.7 438,277 - +0.9 438,281 - +0.1 438,305 + +0.2 438,313 - +0.3 438,401 - -1.3 439,406 - -0.1 439,407 + -0.1 439,615 - -0.3 439,654 + +0.4 439,662 - -0.4 439,790 + Atu0445 0.33 -0.1 439,796 - Atu0445 0.34 +0.5 439,838 - Atu0445 0.42 -0.4 439,887 + Atu0445 0.52 +0.4 439,889 + Atu0445 0.52 -0.4 440,057 + Atu0445 0.86 -0.9 440,057 + Atu0445 0.86 -0.2 440,065 - Atu0445 0.88 -0.1 440,093 - +0.2
Or see this region's nucleotide sequence