Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0365 and Atu0366 are separated by 110 nucleotides Atu0366 and Atu0367 are separated by 44 nucleotides Atu0367 and Atu0368 overlap by 1 nucleotides
Atu0365: Atu0365 - hypothetical protein, at 359,503 to 360,735
Atu0365
Atu0366: Atu0366 - polypeptide deformylase, at 360,846 to 361,358
Atu0366
Atu0367: Atu0367 - methionyl-tRNA formyl transferase, at 361,403 to 362,338
Atu0367
Atu0368: Atu0368 - tRNA pseudouridine synthase I, at 362,338 to 363,138
Atu0368
Position (kb) 360
361
362 Strain fitness (log2 ratio) -1
0
1
2 at 359.944 kb on + strand, within Atu0365 at 359.952 kb on - strand, within Atu0365 at 360.058 kb on - strand, within Atu0365 at 360.063 kb on + strand, within Atu0365 at 360.090 kb on - strand, within Atu0365 at 360.125 kb on - strand, within Atu0365 at 360.172 kb on - strand, within Atu0365 at 360.199 kb on + strand, within Atu0365 at 360.314 kb on + strand, within Atu0365 at 360.322 kb on - strand, within Atu0365 at 360.351 kb on + strand, within Atu0365 at 360.370 kb on + strand, within Atu0365 at 360.385 kb on + strand, within Atu0365 at 360.385 kb on + strand, within Atu0365 at 360.393 kb on - strand, within Atu0365 at 360.393 kb on - strand, within Atu0365 at 360.408 kb on - strand, within Atu0365 at 360.456 kb on + strand, within Atu0365 at 360.570 kb on + strand, within Atu0365 at 360.593 kb on - strand, within Atu0365 at 360.614 kb on + strand at 360.622 kb on - strand at 360.665 kb on + strand at 360.665 kb on + strand at 360.665 kb on + strand at 360.665 kb on + strand at 360.665 kb on + strand at 360.665 kb on + strand at 360.673 kb on - strand at 360.673 kb on - strand at 360.678 kb on - strand at 360.767 kb on + strand at 360.767 kb on + strand at 361.376 kb on + strand at 361.383 kb on + strand at 362.327 kb on + strand at 362.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 359,944 + Atu0365 0.36 +0.8 359,952 - Atu0365 0.36 +0.5 360,058 - Atu0365 0.45 +0.2 360,063 + Atu0365 0.45 +0.3 360,090 - Atu0365 0.48 -0.9 360,125 - Atu0365 0.50 +0.4 360,172 - Atu0365 0.54 -0.3 360,199 + Atu0365 0.56 +0.1 360,314 + Atu0365 0.66 -0.1 360,322 - Atu0365 0.66 -0.3 360,351 + Atu0365 0.69 +0.3 360,370 + Atu0365 0.70 -0.4 360,385 + Atu0365 0.72 +0.2 360,385 + Atu0365 0.72 -0.2 360,393 - Atu0365 0.72 +0.1 360,393 - Atu0365 0.72 +0.6 360,408 - Atu0365 0.73 -1.3 360,456 + Atu0365 0.77 -0.8 360,570 + Atu0365 0.87 +2.3 360,593 - Atu0365 0.88 -0.3 360,614 + +0.7 360,622 - -1.2 360,665 + -0.2 360,665 + +0.6 360,665 + +0.0 360,665 + -0.9 360,665 + +0.1 360,665 + +0.2 360,673 - +0.3 360,673 - +0.1 360,678 - -0.0 360,767 + +0.2 360,767 + -1.3 361,376 + -0.5 361,383 + -0.2 362,327 + +0.8 362,330 - +0.7
Or see this region's nucleotide sequence