Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0340 and Atu0341 overlap by 4 nucleotides Atu0341 and Atu0342 overlap by 1 nucleotides Atu0342 and Atu0343 are separated by 55 nucleotides
Atu0340: Atu0340 - SAM dependent methyltransferase, at 331,152 to 332,081
Atu0340
Atu0341: Atu0341 - rRNA methylase, at 332,078 to 332,938
Atu0341
Atu0342: Atu0342 - lipoprotein signal peptidase, at 332,938 to 333,426
Atu0342
Atu0343: Atu0343 - two component sensor kinase/response regulator hybrid, at 333,482 to 335,722
Atu0343
Position (kb) 332
333
334 Strain fitness (log2 ratio) -1
0
1 at 332.893 kb on + strand at 333.450 kb on + strand at 333.475 kb on + strand at 333.564 kb on - strand at 333.670 kb on + strand at 333.684 kb on - strand at 333.684 kb on - strand at 333.684 kb on - strand at 333.721 kb on + strand, within Atu0343 at 333.721 kb on + strand, within Atu0343 at 333.721 kb on + strand, within Atu0343 at 333.729 kb on - strand, within Atu0343 at 333.766 kb on - strand, within Atu0343 at 333.947 kb on + strand, within Atu0343 at 333.955 kb on - strand, within Atu0343 at 333.986 kb on + strand, within Atu0343 at 333.995 kb on + strand, within Atu0343 at 334.007 kb on + strand, within Atu0343 at 334.009 kb on + strand, within Atu0343 at 334.023 kb on - strand, within Atu0343 at 334.136 kb on - strand, within Atu0343 at 334.182 kb on - strand, within Atu0343 at 334.308 kb on + strand, within Atu0343 at 334.308 kb on + strand, within Atu0343 at 334.316 kb on - strand, within Atu0343 at 334.389 kb on + strand, within Atu0343
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 332,893 + -1.4 333,450 + -0.5 333,475 + -0.6 333,564 - +0.4 333,670 + +0.3 333,684 - +0.1 333,684 - +0.3 333,684 - +0.2 333,721 + Atu0343 0.11 +0.5 333,721 + Atu0343 0.11 +1.3 333,721 + Atu0343 0.11 -0.0 333,729 - Atu0343 0.11 +0.3 333,766 - Atu0343 0.13 +0.2 333,947 + Atu0343 0.21 +0.7 333,955 - Atu0343 0.21 +0.0 333,986 + Atu0343 0.22 +0.0 333,995 + Atu0343 0.23 -0.2 334,007 + Atu0343 0.23 -0.3 334,009 + Atu0343 0.24 +0.1 334,023 - Atu0343 0.24 -0.1 334,136 - Atu0343 0.29 +0.1 334,182 - Atu0343 0.31 -1.4 334,308 + Atu0343 0.37 -0.7 334,308 + Atu0343 0.37 -0.3 334,316 - Atu0343 0.37 -0.9 334,389 + Atu0343 0.40 +1.0
Or see this region's nucleotide sequence