Strain Fitness in Agrobacterium fabrum C58 around Atu0334

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0332 and Atu0333 are separated by 152 nucleotidesAtu0333 and Atu0334 are separated by 9 nucleotidesAtu0334 and Atu0335 are separated by 13 nucleotidesAtu0335 and Atu0337 are separated by 191 nucleotides Atu0332: Atu0332 - RNA polymerase sigma-54 factor, at 325,172 to 326,716 Atu0332 Atu0333: Atu0333 - ABC transporter, nucleotide binding/ATPase protein, at 326,869 to 327,678 Atu0333 Atu0334: Atu0334 - hypothetical protein, at 327,688 to 328,251 Atu0334 Atu0335: Atu0335 - hypothetical protein, at 328,265 to 328,972 Atu0335 Atu0337: Atu0337 - proteinase IV, at 329,164 to 330,117 Atu0337 Position (kb) 327 328 329Strain fitness (log2 ratio) -1 0 1at 326.688 kb on - strandat 328.313 kb on - strandat 329.050 kb on + strandat 329.050 kb on + strandat 329.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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326,688 - -1.3
328,313 - -1.0
329,050 + -0.1
329,050 + +0.6
329,112 + +0.7

Or see this region's nucleotide sequence