Strain Fitness in Agrobacterium fabrum C58 around Atu0324

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0323 and Atu0324 are separated by 769 nucleotidesAtu0324 and Atu0325 are separated by 69 nucleotides Atu0323: Atu0323 - 30S ribosomal protein S20, at 316,511 to 316,777 Atu0323 Atu0324: Atu0324 - chromosomal replication initiator protein DnaA, at 317,547 to 319,109 Atu0324 Atu0325: Atu0325 - oxygen-independent coproporphyrinogen III oxidase, at 319,179 to 320,378 Atu0325 Position (kb) 317 318 319 320Strain fitness (log2 ratio) -1 0 1at 316.983 kb on - strandat 319.170 kb on + strandat 319.178 kb on - strandat 319.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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316,983 - -0.4
319,170 + -0.3
319,178 - -0.0
319,183 - -0.1

Or see this region's nucleotide sequence