Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0225 and Atu0226 are separated by 118 nucleotides Atu0226 and Atu0227 are separated by 186 nucleotides Atu0227 and Atu0228 are separated by 119 nucleotides Atu0228 and Atu0229 are separated by 137 nucleotides
Atu0225: Atu0225 - hypothetical protein, at 229,889 to 230,143
Atu0225
Atu0226: Atu0226 - PilQ, at 230,262 to 230,645
Atu0226
Atu0227: Atu0227 - tRNA-Leu, at 230,832 to 230,918
Atu0227
Atu0228: Atu0228 - hypothetical protein, at 231,038 to 231,343
Atu0228
Atu0229: Atu0229 - hypothetical protein, at 231,481 to 231,930
Atu0229
Position (kb) 230
231 Strain fitness (log2 ratio) -2
-1
0
1 at 229.857 kb on + strand at 229.902 kb on + strand at 230.082 kb on + strand, within Atu0225 at 230.166 kb on - strand at 230.181 kb on - strand at 230.202 kb on + strand at 230.205 kb on - strand at 230.205 kb on - strand at 230.290 kb on - strand at 230.290 kb on - strand at 230.295 kb on - strand at 230.388 kb on - strand, within Atu0226 at 230.463 kb on - strand, within Atu0226 at 230.470 kb on + strand, within Atu0226 at 230.470 kb on + strand, within Atu0226 at 230.478 kb on - strand, within Atu0226 at 230.537 kb on + strand, within Atu0226 at 230.537 kb on + strand, within Atu0226 at 230.537 kb on + strand, within Atu0226 at 230.537 kb on + strand, within Atu0226 at 230.545 kb on - strand, within Atu0226 at 230.545 kb on - strand, within Atu0226 at 230.545 kb on - strand, within Atu0226 at 230.545 kb on - strand, within Atu0226 at 230.547 kb on - strand, within Atu0226 at 230.577 kb on + strand, within Atu0226 at 230.577 kb on + strand, within Atu0226 at 230.577 kb on + strand, within Atu0226 at 230.577 kb on + strand, within Atu0226 at 230.578 kb on - strand, within Atu0226 at 230.585 kb on - strand, within Atu0226 at 230.585 kb on - strand, within Atu0226 at 230.585 kb on - strand, within Atu0226 at 230.585 kb on - strand, within Atu0226 at 230.590 kb on - strand, within Atu0226 at 230.592 kb on - strand, within Atu0226 at 230.639 kb on + strand at 231.052 kb on - strand at 231.066 kb on - strand at 231.160 kb on - strand, within Atu0228 at 231.273 kb on - strand, within Atu0228 at 231.309 kb on - strand, within Atu0228 at 231.336 kb on - strand at 231.424 kb on - strand at 231.424 kb on - strand at 231.424 kb on - strand at 231.556 kb on - strand, within Atu0229 at 231.649 kb on + strand, within Atu0229 at 231.664 kb on - strand, within Atu0229 at 231.669 kb on - strand, within Atu0229 at 231.677 kb on - strand, within Atu0229 at 231.686 kb on - strand, within Atu0229 at 231.691 kb on - strand, within Atu0229 at 231.731 kb on + strand, within Atu0229 at 231.739 kb on - strand, within Atu0229 at 231.766 kb on + strand, within Atu0229 at 231.820 kb on + strand, within Atu0229 at 231.820 kb on + strand, within Atu0229 at 231.820 kb on + strand, within Atu0229 at 231.828 kb on - strand, within Atu0229 at 231.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 229,857 + -0.4 229,902 + -0.0 230,082 + Atu0225 0.76 +0.0 230,166 - -0.1 230,181 - +0.2 230,202 + -0.3 230,205 - -0.1 230,205 - -0.6 230,290 - +0.1 230,290 - +1.2 230,295 - +0.3 230,388 - Atu0226 0.33 -0.0 230,463 - Atu0226 0.52 -0.7 230,470 + Atu0226 0.54 -0.7 230,470 + Atu0226 0.54 -1.3 230,478 - Atu0226 0.56 -0.8 230,537 + Atu0226 0.72 +0.6 230,537 + Atu0226 0.72 -0.0 230,537 + Atu0226 0.72 +0.3 230,537 + Atu0226 0.72 -0.3 230,545 - Atu0226 0.74 -0.1 230,545 - Atu0226 0.74 +0.3 230,545 - Atu0226 0.74 +1.6 230,545 - Atu0226 0.74 +0.2 230,547 - Atu0226 0.74 -0.7 230,577 + Atu0226 0.82 -0.3 230,577 + Atu0226 0.82 -0.8 230,577 + Atu0226 0.82 +0.1 230,577 + Atu0226 0.82 -0.0 230,578 - Atu0226 0.82 -0.3 230,585 - Atu0226 0.84 -0.3 230,585 - Atu0226 0.84 -0.1 230,585 - Atu0226 0.84 -0.2 230,585 - Atu0226 0.84 -0.1 230,590 - Atu0226 0.85 -0.7 230,592 - Atu0226 0.86 -0.8 230,639 + -0.0 231,052 - +0.2 231,066 - +0.2 231,160 - Atu0228 0.40 -0.2 231,273 - Atu0228 0.77 -0.0 231,309 - Atu0228 0.89 +0.1 231,336 - +0.2 231,424 - +0.2 231,424 - -0.0 231,424 - -0.3 231,556 - Atu0229 0.17 -0.4 231,649 + Atu0229 0.37 -0.3 231,664 - Atu0229 0.41 -0.6 231,669 - Atu0229 0.42 +0.7 231,677 - Atu0229 0.44 -0.3 231,686 - Atu0229 0.46 +0.1 231,691 - Atu0229 0.47 -1.0 231,731 + Atu0229 0.56 -0.2 231,739 - Atu0229 0.57 -2.1 231,766 + Atu0229 0.63 -0.1 231,820 + Atu0229 0.75 -0.2 231,820 + Atu0229 0.75 +0.0 231,820 + Atu0229 0.75 -0.4 231,828 - Atu0229 0.77 -0.5 231,899 - -1.2
Or see this region's nucleotide sequence