Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0180 and Atu0181 overlap by 4 nucleotides Atu0181 and Atu0182 are separated by 82 nucleotides Atu0182 and Atu0183 are separated by 9 nucleotides Atu0183 and Atu0184 are separated by 141 nucleotides
Atu0180: Atu0180 - hypothetical protein, at 183,869 to 184,480
Atu0180
Atu0181: Atu0181 - hypothetical protein, at 184,477 to 184,938
Atu0181
Atu0182: Atu0182 - transcriptional regulator, GntR family, at 185,021 to 185,758
Atu0182
Atu0183: Atu0183 - dihydrodipicolinate reductase, at 185,768 to 186,595
Atu0183
Atu0184: Atu0184 - glucokinase, at 186,737 to 187,759
Atu0184
Position (kb) 185
186 Strain fitness (log2 ratio) -1
0
1 at 184.121 kb on - strand, within Atu0180 at 184.158 kb on + strand, within Atu0180 at 184.238 kb on + strand, within Atu0180 at 184.251 kb on + strand, within Atu0180 at 184.259 kb on - strand, within Atu0180 at 184.339 kb on + strand, within Atu0180 at 184.366 kb on + strand, within Atu0180 at 184.400 kb on - strand, within Atu0180 at 184.475 kb on + strand at 184.483 kb on - strand at 184.483 kb on - strand at 184.483 kb on - strand at 184.487 kb on + strand at 184.582 kb on - strand, within Atu0181 at 184.618 kb on - strand, within Atu0181 at 184.694 kb on - strand, within Atu0181 at 184.782 kb on - strand, within Atu0181 at 184.843 kb on + strand, within Atu0181 at 185.086 kb on + strand at 185.086 kb on + strand at 185.220 kb on + strand, within Atu0182 at 185.264 kb on - strand, within Atu0182 at 185.323 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.479 kb on + strand, within Atu0182 at 186.718 kb on - strand at 186.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 184,121 - Atu0180 0.41 -0.6 184,158 + Atu0180 0.47 +0.2 184,238 + Atu0180 0.60 -0.4 184,251 + Atu0180 0.62 -0.3 184,259 - Atu0180 0.64 -0.5 184,339 + Atu0180 0.77 +0.2 184,366 + Atu0180 0.81 +0.3 184,400 - Atu0180 0.87 +0.1 184,475 + +0.0 184,483 - +0.1 184,483 - +0.3 184,483 - +0.0 184,487 + -1.2 184,582 - Atu0181 0.23 -0.7 184,618 - Atu0181 0.31 +1.6 184,694 - Atu0181 0.47 +0.5 184,782 - Atu0181 0.66 -0.7 184,843 + Atu0181 0.79 +0.1 185,086 + -0.1 185,086 + -0.8 185,220 + Atu0182 0.27 +0.1 185,264 - Atu0182 0.33 -0.3 185,323 + Atu0182 0.41 +1.2 185,449 + Atu0182 0.58 +0.7 185,449 + Atu0182 0.58 +0.3 185,479 + Atu0182 0.62 +1.2 186,718 - +0.8 186,721 + -0.9
Or see this region's nucleotide sequence