Strain Fitness in Agrobacterium fabrum C58 around Atu0089

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0087 and Atu0088 are separated by 102 nucleotidesAtu0088 and Atu0089 overlap by 4 nucleotidesAtu0089 and Atu0090 are separated by 63 nucleotides Atu0087: Atu0087 - translation initiation factor IF-2, at 88,750 to 91,491 Atu0087 Atu0088: Atu0088 - hypothetical protein, at 91,594 to 92,295 Atu0088 Atu0089: Atu0089 - N-utilization substance protein A, at 92,292 to 93,908 Atu0089 Atu0090: Atu0090 - hypothetical protein, at 93,972 to 94,568 Atu0090 Position (kb) 92 93 94Strain fitness (log2 ratio) -1 0 1at 94.718 kb on - strandat 94.741 kb on - strandat 94.808 kb on + strandat 94.816 kb on - strandat 94.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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94,718 - -0.2
94,741 - -0.5
94,808 + +0.4
94,816 - +0.1
94,861 - +0.4

Or see this region's nucleotide sequence