Strain Fitness in Agrobacterium fabrum C58 around Atu0058

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0057 and Atu0058 are separated by 259 nucleotidesAtu0058 and Atu0059 are separated by 114 nucleotidesAtu0059 and Atu0060 are separated by 238 nucleotidesAtu0060 and Atu0061 are separated by 155 nucleotides Atu0057: Atu0057 - 23S ribosomal RNA, at 59,719 to 61,975 Atu0057 Atu0058: Atu0058 - hypothetical protein, at 62,235 to 62,492 Atu0058 Atu0059: Atu0059 - 5S ribosomal RNA, at 62,607 to 62,725 Atu0059 Atu0060: Atu0060 - tRNA-Met, at 62,964 to 63,040 Atu0060 Atu0061: Atu0061 - ATP-dependent DNA helicase, at 63,196 to 65,004 Atu0061 Position (kb) 62 63Strain fitness (log2 ratio) -1 0 1at 63.208 kb on + strandat 63.219 kb on + strandat 63.347 kb on + strandat 63.426 kb on + strand, within Atu0061at 63.466 kb on - strand, within Atu0061at 63.466 kb on - strand, within Atu0061

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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63,208 + -0.0
63,219 + +0.8
63,347 + -0.1
63,426 + Atu0061 0.13 +0.2
63,466 - Atu0061 0.15 +0.5
63,466 - Atu0061 0.15 -0.2

Or see this region's nucleotide sequence