Strain Fitness in Agrobacterium fabrum C58 around Atu0053

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0052 and Atu0053 are separated by 667 nucleotidesAtu0053 and Atu0054 are separated by 327 nucleotidesAtu0054 and Atu0055 are separated by 58 nucleotides Atu0052: Atu0052 - helicase, at 53,592 to 56,078 Atu0052 Atu0053: Atu0053 - 16S ribosomal RNA, at 56,746 to 58,225 Atu0053 Atu0054: Atu0054 - tRNA-Ile, at 58,553 to 58,629 Atu0054 Atu0055: Atu0055 - tRNA-Ala, at 58,688 to 58,763 Atu0055 Position (kb) 56 57 58 59Strain fitness (log2 ratio) -1 0 1at 55.751 kb on + strand, within Atu0052at 55.751 kb on + strand, within Atu0052at 55.840 kb on - strandat 55.894 kb on - strandat 55.939 kb on + strandat 55.945 kb on + strandat 55.945 kb on + strandat 55.947 kb on - strandat 55.953 kb on - strandat 55.993 kb on + strandat 56.001 kb on - strandat 56.006 kb on - strandat 56.013 kb on + strandat 56.028 kb on + strandat 56.104 kb on + strandat 56.137 kb on - strandat 56.147 kb on - strandat 56.147 kb on - strandat 56.203 kb on + strandat 56.211 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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55,751 + Atu0052 0.87 -1.2
55,751 + Atu0052 0.87 -1.7
55,840 - -0.7
55,894 - -0.4
55,939 + +0.6
55,945 + -0.2
55,945 + -0.1
55,947 - -0.0
55,953 - -0.2
55,993 + -0.3
56,001 - -0.0
56,006 - -0.3
56,013 + -0.9
56,028 + -0.2
56,104 + -0.7
56,137 - +0.2
56,147 - -0.1
56,147 - -0.3
56,203 + +0.5
56,211 - +0.6

Or see this region's nucleotide sequence