Strain Fitness in Agrobacterium fabrum C58 around Atu0034

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0033 and Atu0034 are separated by 55 nucleotidesAtu0034 and Atu0035 are separated by 338 nucleotides Atu0033: Atu0033 - two component sensor kinase, at 34,679 to 36,469 Atu0033 Atu0034: Atu0034 - two component response regulator, at 36,525 to 37,250 Atu0034 Atu0035: Atu0035 - phosphoenolpyruvate carboxykinase, at 37,589 to 39,199 Atu0035 Position (kb) 36 37 38Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 36.485 kb on + strandat 37.299 kb on + strandat 37.312 kb on - strandat 37.572 kb on + strandat 37.885 kb on + strand, within Atu0035at 38.006 kb on + strand, within Atu0035at 38.014 kb on - strand, within Atu0035at 38.105 kb on - strand, within Atu0035at 38.105 kb on - strand, within Atu0035at 38.153 kb on - strand, within Atu0035

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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36,485 + +1.4
37,299 + -0.7
37,312 - +0.6
37,572 + -3.4
37,885 + Atu0035 0.18 -3.8
38,006 + Atu0035 0.26 -2.5
38,014 - Atu0035 0.26 -4.2
38,105 - Atu0035 0.32 -0.9
38,105 - Atu0035 0.32 -4.0
38,153 - Atu0035 0.35 -4.8

Or see this region's nucleotide sequence