Strain Fitness in Escherichia coli BW25113 around b4683

Experiment: LB, Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyqeI and yqeJ overlap by 8 nucleotidesyqeJ and yqeL are separated by 32 nucleotidesyqeL and yqeK are separated by 35 nucleotidesyqeK and ygeF are separated by 193 nucleotides b2847: yqeI - predicted transcriptional regulator (NCBI), at 2,986,524 to 2,987,333 yqeI b2848: yqeJ - orf, hypothetical protein (VIMSS), at 2,987,326 to 2,987,808 yqeJ b4683: yqeL - expressed protein (RefSeq), at 2,987,841 to 2,987,921 yqeL b2849: yqeK - orf, hypothetical protein (VIMSS), at 2,987,957 to 2,988,382 yqeK b2850: ygeF - hypothetical protein (NCBI), at 2,988,576 to 2,989,065 ygeF Position (kb) 2987 2988Strain fitness (log2 ratio) -1 0 1 2at 2986.860 kb on + strand, within yqeIat 2986.875 kb on + strand, within yqeIat 2986.882 kb on + strand, within yqeIat 2986.884 kb on + strand, within yqeIat 2986.886 kb on + strand, within yqeIat 2986.886 kb on + strand, within yqeIat 2986.890 kb on + strand, within yqeIat 2986.924 kb on + strand, within yqeIat 2987.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
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2,986,860 + yqeI b2847 0.41 +1.8
2,986,875 + yqeI b2847 0.43 +1.8
2,986,882 + yqeI b2847 0.44 +1.8
2,986,884 + yqeI b2847 0.44 +1.8
2,986,886 + yqeI b2847 0.45 +1.8
2,986,886 + yqeI b2847 0.45 +1.8
2,986,890 + yqeI b2847 0.45 +1.8
2,986,924 + yqeI b2847 0.49 +1.8
2,987,296 + +1.8

Or see this region's nucleotide sequence