Experiment: LB, Aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rmuC and ubiE are separated by 94 nucleotides ubiE and yigP are separated by 13 nucleotides yigP and ubiB overlap by 4 nucleotides
b3832: rmuC - predicted recombination limiting protein (NCBI), at 4,015,356 to 4,016,783
rmuC
b3833: ubiE - ubiquinone/menaquinone biosynthesis methyltransferase (NCBI), at 4,016,878 to 4,017,633
ubiE
b3834: yigP - hypothetical protein (NCBI), at 4,017,647 to 4,018,252
yigP
b3835: ubiB - putative ubiquinone biosynthesis protein UbiB (NCBI), at 4,018,249 to 4,019,889
ubiB
Position (kb)
4016
4017
4018 Strain fitness (log2 ratio)
-1
0
1
2 at 4015.882 kb on + strand, within rmuC at 4015.882 kb on + strand, within rmuC at 4015.890 kb on - strand, within rmuC at 4015.922 kb on - strand, within rmuC at 4015.922 kb on - strand, within rmuC at 4015.933 kb on - strand, within rmuC at 4015.938 kb on + strand, within rmuC at 4015.956 kb on + strand, within rmuC at 4015.956 kb on + strand, within rmuC at 4015.964 kb on + strand, within rmuC at 4015.964 kb on + strand, within rmuC at 4015.975 kb on + strand, within rmuC at 4015.975 kb on + strand, within rmuC at 4015.988 kb on - strand, within rmuC at 4015.988 kb on - strand, within rmuC at 4015.989 kb on + strand, within rmuC at 4015.989 kb on + strand, within rmuC at 4015.992 kb on + strand, within rmuC at 4015.992 kb on + strand, within rmuC at 4016.010 kb on - strand, within rmuC at 4016.012 kb on + strand, within rmuC at 4016.012 kb on + strand, within rmuC at 4016.027 kb on - strand, within rmuC at 4016.027 kb on - strand, within rmuC at 4016.034 kb on + strand, within rmuC at 4016.034 kb on + strand, within rmuC at 4016.039 kb on + strand, within rmuC at 4016.039 kb on + strand, within rmuC at 4016.077 kb on - strand, within rmuC at 4016.082 kb on - strand, within rmuC at 4016.084 kb on + strand, within rmuC at 4016.202 kb on - strand, within rmuC at 4016.222 kb on - strand, within rmuC at 4016.294 kb on + strand, within rmuC at 4016.294 kb on + strand, within rmuC at 4016.309 kb on - strand, within rmuC at 4016.309 kb on - strand, within rmuC at 4016.338 kb on + strand, within rmuC at 4016.338 kb on + strand, within rmuC at 4016.343 kb on + strand, within rmuC at 4016.394 kb on + strand, within rmuC at 4016.394 kb on + strand, within rmuC at 4016.416 kb on + strand, within rmuC at 4016.419 kb on - strand, within rmuC at 4016.439 kb on + strand, within rmuC at 4016.439 kb on + strand, within rmuC at 4016.447 kb on - strand, within rmuC at 4016.563 kb on - strand, within rmuC at 4016.563 kb on - strand, within rmuC at 4016.632 kb on + strand, within rmuC at 4016.632 kb on + strand, within rmuC at 4016.632 kb on + strand, within rmuC at 4016.671 kb on + strand at 4016.671 kb on + strand at 4016.687 kb on + strand at 4016.687 kb on + strand at 4016.691 kb on - strand at 4016.699 kb on + strand at 4016.702 kb on + strand at 4016.712 kb on - strand at 4016.797 kb on + strand at 4016.797 kb on + strand at 4016.841 kb on - strand at 4016.841 kb on - strand at 4017.662 kb on + strand at 4017.674 kb on + strand at 4017.674 kb on + strand at 4017.698 kb on + strand at 4017.698 kb on + strand at 4017.711 kb on + strand, within yigP at 4017.732 kb on + strand, within yigP at 4017.752 kb on + strand, within yigP at 4017.797 kb on + strand, within yigP at 4017.797 kb on + strand, within yigP at 4017.816 kb on + strand, within yigP at 4017.816 kb on + strand, within yigP at 4017.843 kb on + strand, within yigP at 4017.843 kb on + strand, within yigP at 4017.916 kb on + strand, within yigP at 4017.992 kb on + strand, within yigP at 4017.992 kb on + strand, within yigP at 4018.018 kb on + strand, within yigP at 4018.018 kb on + strand, within yigP at 4018.038 kb on + strand, within yigP
Per-strain Table
Position Strand Gene LocusTag Fraction LB, Aerobic remove 4,015,882 + rmuC b3832 0.37 -0.2 4,015,882 + rmuC b3832 0.37 -0.4 4,015,890 - rmuC b3832 0.37 -0.1 4,015,922 - rmuC b3832 0.40 +1.1 4,015,922 - rmuC b3832 0.40 +1.4 4,015,933 - rmuC b3832 0.40 +0.2 4,015,938 + rmuC b3832 0.41 +0.2 4,015,956 + rmuC b3832 0.42 +0.3 4,015,956 + rmuC b3832 0.42 +1.3 4,015,964 + rmuC b3832 0.43 +0.4 4,015,964 + rmuC b3832 0.43 -1.1 4,015,975 + rmuC b3832 0.43 -0.8 4,015,975 + rmuC b3832 0.43 -0.1 4,015,988 - rmuC b3832 0.44 -0.5 4,015,988 - rmuC b3832 0.44 -0.6 4,015,989 + rmuC b3832 0.44 -0.0 4,015,989 + rmuC b3832 0.44 -0.6 4,015,992 + rmuC b3832 0.45 +0.7 4,015,992 + rmuC b3832 0.45 -0.5 4,016,010 - rmuC b3832 0.46 -0.2 4,016,012 + rmuC b3832 0.46 -1.3 4,016,012 + rmuC b3832 0.46 +0.9 4,016,027 - rmuC b3832 0.47 +2.2 4,016,027 - rmuC b3832 0.47 +0.0 4,016,034 + rmuC b3832 0.47 -0.7 4,016,034 + rmuC b3832 0.47 +0.7 4,016,039 + rmuC b3832 0.48 -1.7 4,016,039 + rmuC b3832 0.48 +0.3 4,016,077 - rmuC b3832 0.50 -0.2 4,016,082 - rmuC b3832 0.51 -0.4 4,016,084 + rmuC b3832 0.51 +0.6 4,016,202 - rmuC b3832 0.59 -0.2 4,016,222 - rmuC b3832 0.61 -0.1 4,016,294 + rmuC b3832 0.66 -0.5 4,016,294 + rmuC b3832 0.66 -0.2 4,016,309 - rmuC b3832 0.67 +0.7 4,016,309 - rmuC b3832 0.67 +0.5 4,016,338 + rmuC b3832 0.69 +1.0 4,016,338 + rmuC b3832 0.69 +1.5 4,016,343 + rmuC b3832 0.69 -1.4 4,016,394 + rmuC b3832 0.73 +1.1 4,016,394 + rmuC b3832 0.73 +0.1 4,016,416 + rmuC b3832 0.74 +0.2 4,016,419 - rmuC b3832 0.74 +0.6 4,016,439 + rmuC b3832 0.76 -1.0 4,016,439 + rmuC b3832 0.76 -0.6 4,016,447 - rmuC b3832 0.76 -0.8 4,016,563 - rmuC b3832 0.85 -0.4 4,016,563 - rmuC b3832 0.85 -0.7 4,016,632 + rmuC b3832 0.89 +0.2 4,016,632 + rmuC b3832 0.89 +0.2 4,016,632 + rmuC b3832 0.89 +0.4 4,016,671 + -0.1 4,016,671 + +0.7 4,016,687 + +1.1 4,016,687 + +0.3 4,016,691 - -1.1 4,016,699 + -0.6 4,016,702 + +0.4 4,016,712 - -0.7 4,016,797 + -0.2 4,016,797 + -0.1 4,016,841 - -0.6 4,016,841 - +0.1 4,017,662 + +0.2 4,017,674 + -0.9 4,017,674 + -0.0 4,017,698 + -0.7 4,017,698 + -0.1 4,017,711 + yigP b3834 0.11 -0.5 4,017,732 + yigP b3834 0.14 -0.5 4,017,752 + yigP b3834 0.17 +0.1 4,017,797 + yigP b3834 0.25 +0.0 4,017,797 + yigP b3834 0.25 +0.2 4,017,816 + yigP b3834 0.28 +0.0 4,017,816 + yigP b3834 0.28 +0.8 4,017,843 + yigP b3834 0.32 -1.4 4,017,843 + yigP b3834 0.32 -0.7 4,017,916 + yigP b3834 0.44 +0.9 4,017,992 + yigP b3834 0.57 +0.8 4,017,992 + yigP b3834 0.57 -0.5 4,018,018 + yigP b3834 0.61 +0.8 4,018,018 + yigP b3834 0.61 -0.3 4,018,038 + yigP b3834 0.65 -0.2
Or see this region's nucleotide sequence