Strain Fitness in Escherichia coli BW25113 around b3981

Experiment: LB, Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttufB and secE are separated by 229 nucleotidessecE and nusG are separated by 1 nucleotidesnusG and rplK are separated by 158 nucleotides b3980: tufB - protein chain elongation factor EF-Tu (duplicate of tufA) (NCBI), at 4,173,967 to 4,175,151 tufB b3981: secE - translocase (NCBI), at 4,175,381 to 4,175,764 secE b3982: nusG - transcription antitermination protein NusG (NCBI), at 4,175,766 to 4,176,311 nusG b3983: rplK - 50S ribosomal protein L11 (NCBI), at 4,176,470 to 4,176,898 rplK Position (kb) 4175 4176Strain fitness (log2 ratio) -1 0 1at 4175.090 kb on + strandat 4175.106 kb on + strandat 4175.108 kb on + strandat 4175.168 kb on + strandat 4175.168 kb on + strandat 4175.277 kb on + strandat 4175.377 kb on + strandat 4175.377 kb on + strandat 4176.387 kb on + strandat 4176.431 kb on + strandat 4176.431 kb on + strandat 4176.433 kb on + strandat 4176.444 kb on + strandat 4176.444 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
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4,175,090 + +0.5
4,175,106 + -0.2
4,175,108 + +0.3
4,175,168 + +0.3
4,175,168 + +0.4
4,175,277 + -0.1
4,175,377 + +0.1
4,175,377 + +0.3
4,176,387 + -0.1
4,176,431 + -0.1
4,176,431 + -0.8
4,176,433 + -0.0
4,176,444 + -0.3
4,176,444 + +0.0

Or see this region's nucleotide sequence