Strain Fitness in Escherichia coli BW25113 around b3701

Experiment: LB, Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecF and dnaN overlap by 1 nucleotidesdnaN and dnaA are separated by 4 nucleotides b3700: recF - recombination protein F (NCBI), at 3,878,171 to 3,879,244 recF b3701: dnaN - DNA polymerase III subunit beta (NCBI), at 3,879,244 to 3,880,344 dnaN b3702: dnaA - chromosomal replication initiation protein (NCBI), at 3,880,349 to 3,881,752 dnaA Position (kb) 3879 3880 3881Strain fitness (log2 ratio) -2 -1 0 1at 3878.247 kb on - strandat 3878.247 kb on - strandat 3878.257 kb on - strandat 3878.322 kb on - strand, within recFat 3878.376 kb on - strand, within recFat 3878.407 kb on - strand, within recFat 3878.407 kb on - strand, within recFat 3878.489 kb on + strand, within recFat 3878.503 kb on - strand, within recFat 3878.505 kb on + strand, within recFat 3878.505 kb on + strand, within recFat 3878.505 kb on + strand, within recFat 3878.505 kb on + strand, within recFat 3878.505 kb on + strand, within recFat 3878.505 kb on + strand, within recFat 3878.513 kb on - strand, within recFat 3878.559 kb on - strandat 3878.559 kb on - strandat 3878.565 kb on - strand, within recFat 3878.628 kb on + strand, within recFat 3878.655 kb on + strand, within recFat 3878.655 kb on + strand, within recFat 3878.657 kb on + strand, within recFat 3878.657 kb on + strand, within recFat 3878.657 kb on + strand, within recFat 3878.657 kb on + strand, within recFat 3878.660 kb on + strand, within recFat 3878.665 kb on - strand, within recFat 3878.665 kb on - strand, within recFat 3878.699 kb on + strand, within recFat 3878.707 kb on + strand, within recFat 3878.714 kb on - strand, within recFat 3878.736 kb on - strand, within recFat 3878.736 kb on - strand, within recFat 3878.742 kb on + strand, within recFat 3878.757 kb on + strand, within recFat 3878.757 kb on + strand, within recFat 3878.760 kb on - strand, within recFat 3878.789 kb on + strand, within recFat 3878.837 kb on + strand, within recFat 3878.837 kb on + strand, within recFat 3878.878 kb on - strand, within recFat 3878.883 kb on - strand, within recFat 3878.912 kb on + strand, within recFat 3878.912 kb on + strand, within recFat 3878.915 kb on - strand, within recFat 3878.915 kb on - strand, within recFat 3878.926 kb on - strand, within recFat 3878.926 kb on - strand, within recFat 3878.941 kb on + strand, within recFat 3878.949 kb on - strand, within recFat 3878.954 kb on - strand, within recFat 3878.982 kb on + strand, within recFat 3878.991 kb on - strand, within recFat 3878.992 kb on + strand, within recFat 3879.003 kb on + strand, within recFat 3879.052 kb on + strand, within recFat 3879.052 kb on + strand, within recFat 3879.098 kb on + strand, within recFat 3879.099 kb on - strand, within recFat 3879.117 kb on - strand, within recFat 3879.119 kb on - strand, within recFat 3879.120 kb on - strand, within recFat 3879.120 kb on - strand, within recFat 3879.181 kb on - strandat 3879.185 kb on + strandat 3879.220 kb on - strandat 3879.242 kb on - strandat 3879.242 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
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3,878,247 - -0.1
3,878,247 - -0.5
3,878,257 - -0.2
3,878,322 - recF b3700 0.14 +0.3
3,878,376 - recF b3700 0.19 +0.8
3,878,407 - recF b3700 0.22 +0.2
3,878,407 - recF b3700 0.22 +0.0
3,878,489 + recF b3700 0.30 -1.6
3,878,503 - recF b3700 0.31 -0.3
3,878,505 + recF b3700 0.31 -0.2
3,878,505 + recF b3700 0.31 +0.2
3,878,505 + recF b3700 0.31 -1.7
3,878,505 + recF b3700 0.31 -0.9
3,878,505 + recF b3700 0.31 -1.2
3,878,505 + recF b3700 0.31 -0.3
3,878,513 - recF b3700 0.32 -2.1
3,878,559 - +1.3
3,878,559 - +0.7
3,878,565 - recF b3700 0.37 -1.8
3,878,628 + recF b3700 0.43 -0.7
3,878,655 + recF b3700 0.45 +0.4
3,878,655 + recF b3700 0.45 -0.1
3,878,657 + recF b3700 0.45 +1.1
3,878,657 + recF b3700 0.45 +0.7
3,878,657 + recF b3700 0.45 +0.3
3,878,657 + recF b3700 0.45 +0.5
3,878,660 + recF b3700 0.46 -0.9
3,878,665 - recF b3700 0.46 -0.8
3,878,665 - recF b3700 0.46 -0.1
3,878,699 + recF b3700 0.49 -0.1
3,878,707 + recF b3700 0.50 -1.4
3,878,714 - recF b3700 0.51 +0.0
3,878,736 - recF b3700 0.53 -1.3
3,878,736 - recF b3700 0.53 -1.4
3,878,742 + recF b3700 0.53 -0.1
3,878,757 + recF b3700 0.55 -1.0
3,878,757 + recF b3700 0.55 -0.5
3,878,760 - recF b3700 0.55 +0.2
3,878,789 + recF b3700 0.58 -1.6
3,878,837 + recF b3700 0.62 -0.2
3,878,837 + recF b3700 0.62 -0.3
3,878,878 - recF b3700 0.66 +0.2
3,878,883 - recF b3700 0.66 -0.2
3,878,912 + recF b3700 0.69 +1.3
3,878,912 + recF b3700 0.69 +0.2
3,878,915 - recF b3700 0.69 -0.1
3,878,915 - recF b3700 0.69 -2.1
3,878,926 - recF b3700 0.70 -1.7
3,878,926 - recF b3700 0.70 -0.4
3,878,941 + recF b3700 0.72 -1.1
3,878,949 - recF b3700 0.72 +0.8
3,878,954 - recF b3700 0.73 -0.5
3,878,982 + recF b3700 0.76 -0.5
3,878,991 - recF b3700 0.76 +1.0
3,878,992 + recF b3700 0.76 -0.9
3,879,003 + recF b3700 0.77 -0.3
3,879,052 + recF b3700 0.82 -0.7
3,879,052 + recF b3700 0.82 +0.9
3,879,098 + recF b3700 0.86 -0.8
3,879,099 - recF b3700 0.86 -1.5
3,879,117 - recF b3700 0.88 -0.0
3,879,119 - recF b3700 0.88 +0.4
3,879,120 - recF b3700 0.88 +0.8
3,879,120 - recF b3700 0.88 -0.4
3,879,181 - -1.0
3,879,185 + -1.1
3,879,220 - +0.3
3,879,242 - +0.7
3,879,242 - +1.0

Or see this region's nucleotide sequence