Experiment: LB, Aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhfZ and trpS are separated by 289 nucleotides trpS and gph overlap by 8 nucleotides gph and rpe overlap by 8 nucleotides
b3383: yhfZ - hypothetical protein (NCBI), at 3,509,461 to 3,510,366
yhfZ
b3384: trpS - tryptophanyl-tRNA synthetase (NCBI), at 3,510,656 to 3,511,660
trpS
b3385: gph - phosphoglycolate phosphatase (NCBI), at 3,511,653 to 3,512,411
gph
b3386: rpe - ribulose-phosphate 3-epimerase (NCBI), at 3,512,404 to 3,513,081
rpe
Position (kb)
3510
3511
3512 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3509.723 kb on + strand, within yhfZ at 3509.803 kb on + strand, within yhfZ at 3509.803 kb on + strand, within yhfZ at 3509.875 kb on - strand, within yhfZ at 3509.888 kb on - strand, within yhfZ at 3509.888 kb on - strand, within yhfZ at 3509.926 kb on - strand, within yhfZ at 3509.966 kb on + strand, within yhfZ at 3509.966 kb on + strand, within yhfZ at 3510.024 kb on - strand, within yhfZ at 3510.058 kb on - strand, within yhfZ at 3510.062 kb on + strand, within yhfZ at 3510.084 kb on - strand, within yhfZ at 3510.098 kb on - strand, within yhfZ at 3510.098 kb on - strand, within yhfZ at 3510.117 kb on - strand, within yhfZ at 3510.124 kb on + strand, within yhfZ at 3510.145 kb on - strand, within yhfZ at 3510.189 kb on + strand, within yhfZ at 3510.189 kb on + strand, within yhfZ at 3510.189 kb on + strand, within yhfZ at 3510.584 kb on + strand at 3510.584 kb on + strand at 3510.596 kb on + strand at 3510.597 kb on + strand at 3510.602 kb on + strand at 3510.605 kb on + strand at 3510.628 kb on - strand at 3510.635 kb on + strand at 3510.635 kb on + strand at 3511.699 kb on - strand at 3511.714 kb on + strand at 3511.714 kb on + strand at 3511.714 kb on + strand at 3511.793 kb on + strand, within gph at 3511.795 kb on + strand, within gph at 3511.820 kb on + strand, within gph at 3511.825 kb on - strand, within gph at 3511.851 kb on + strand, within gph at 3511.851 kb on + strand, within gph at 3511.856 kb on - strand, within gph at 3511.877 kb on + strand, within gph at 3511.877 kb on + strand, within gph at 3511.887 kb on + strand, within gph at 3511.897 kb on - strand, within gph at 3511.925 kb on - strand, within gph at 3511.950 kb on - strand, within gph at 3511.950 kb on - strand, within gph at 3511.965 kb on + strand, within gph at 3511.965 kb on + strand, within gph at 3511.965 kb on + strand, within gph at 3511.973 kb on - strand, within gph at 3511.975 kb on - strand, within gph at 3511.975 kb on - strand, within gph at 3511.985 kb on - strand, within gph at 3512.007 kb on + strand, within gph at 3512.011 kb on - strand, within gph at 3512.020 kb on - strand, within gph at 3512.021 kb on - strand, within gph at 3512.026 kb on - strand, within gph at 3512.030 kb on + strand, within gph at 3512.038 kb on - strand, within gph at 3512.038 kb on - strand, within gph at 3512.038 kb on - strand, within gph at 3512.104 kb on + strand, within gph at 3512.109 kb on + strand, within gph at 3512.132 kb on + strand, within gph at 3512.140 kb on - strand, within gph at 3512.140 kb on - strand, within gph at 3512.140 kb on - strand, within gph at 3512.166 kb on + strand, within gph at 3512.166 kb on + strand, within gph at 3512.172 kb on - strand, within gph at 3512.177 kb on + strand, within gph at 3512.216 kb on - strand, within gph at 3512.217 kb on + strand, within gph at 3512.218 kb on + strand, within gph at 3512.226 kb on - strand, within gph at 3512.226 kb on - strand, within gph at 3512.235 kb on + strand, within gph at 3512.246 kb on + strand, within gph at 3512.295 kb on + strand, within gph at 3512.295 kb on + strand, within gph at 3512.313 kb on - strand, within gph at 3512.313 kb on - strand, within gph at 3512.345 kb on + strand at 3512.345 kb on + strand at 3512.352 kb on + strand at 3512.358 kb on - strand at 3512.360 kb on - strand at 3512.360 kb on - strand at 3512.368 kb on - strand at 3512.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, Aerobic remove 3,509,723 + yhfZ b3383 0.29 +0.6 3,509,803 + yhfZ b3383 0.38 +1.1 3,509,803 + yhfZ b3383 0.38 +0.3 3,509,875 - yhfZ b3383 0.46 +0.2 3,509,888 - yhfZ b3383 0.47 +1.2 3,509,888 - yhfZ b3383 0.47 -1.6 3,509,926 - yhfZ b3383 0.51 -0.0 3,509,966 + yhfZ b3383 0.56 +0.1 3,509,966 + yhfZ b3383 0.56 +0.3 3,510,024 - yhfZ b3383 0.62 -0.4 3,510,058 - yhfZ b3383 0.66 -0.5 3,510,062 + yhfZ b3383 0.66 +0.4 3,510,084 - yhfZ b3383 0.69 +0.6 3,510,098 - yhfZ b3383 0.70 -0.2 3,510,098 - yhfZ b3383 0.70 -0.7 3,510,117 - yhfZ b3383 0.72 -0.0 3,510,124 + yhfZ b3383 0.73 -0.5 3,510,145 - yhfZ b3383 0.75 -0.1 3,510,189 + yhfZ b3383 0.80 -0.2 3,510,189 + yhfZ b3383 0.80 +0.1 3,510,189 + yhfZ b3383 0.80 -0.0 3,510,584 + -0.4 3,510,584 + +0.4 3,510,596 + +0.1 3,510,597 + -0.6 3,510,602 + -0.1 3,510,605 + -0.9 3,510,628 - -0.1 3,510,635 + -0.6 3,510,635 + +0.3 3,511,699 - +0.0 3,511,714 + +0.8 3,511,714 + +0.1 3,511,714 + +0.9 3,511,793 + gph b3385 0.18 -0.2 3,511,795 + gph b3385 0.19 -0.2 3,511,820 + gph b3385 0.22 -1.8 3,511,825 - gph b3385 0.23 -0.0 3,511,851 + gph b3385 0.26 -0.4 3,511,851 + gph b3385 0.26 +0.6 3,511,856 - gph b3385 0.27 +0.8 3,511,877 + gph b3385 0.30 -0.0 3,511,877 + gph b3385 0.30 -1.8 3,511,887 + gph b3385 0.31 +0.2 3,511,897 - gph b3385 0.32 +0.7 3,511,925 - gph b3385 0.36 +0.1 3,511,950 - gph b3385 0.39 -0.3 3,511,950 - gph b3385 0.39 -0.7 3,511,965 + gph b3385 0.41 -0.8 3,511,965 + gph b3385 0.41 -0.6 3,511,965 + gph b3385 0.41 +0.0 3,511,973 - gph b3385 0.42 +0.0 3,511,975 - gph b3385 0.42 -0.7 3,511,975 - gph b3385 0.42 -0.4 3,511,985 - gph b3385 0.44 +0.1 3,512,007 + gph b3385 0.47 +0.1 3,512,011 - gph b3385 0.47 -0.3 3,512,020 - gph b3385 0.48 -0.8 3,512,021 - gph b3385 0.48 -1.6 3,512,026 - gph b3385 0.49 -0.5 3,512,030 + gph b3385 0.50 +0.6 3,512,038 - gph b3385 0.51 +0.4 3,512,038 - gph b3385 0.51 -0.1 3,512,038 - gph b3385 0.51 +0.2 3,512,104 + gph b3385 0.59 -0.4 3,512,109 + gph b3385 0.60 +0.5 3,512,132 + gph b3385 0.63 -0.2 3,512,140 - gph b3385 0.64 -0.3 3,512,140 - gph b3385 0.64 +0.3 3,512,140 - gph b3385 0.64 -0.1 3,512,166 + gph b3385 0.68 +0.3 3,512,166 + gph b3385 0.68 +0.3 3,512,172 - gph b3385 0.68 +1.4 3,512,177 + gph b3385 0.69 -1.2 3,512,216 - gph b3385 0.74 +0.4 3,512,217 + gph b3385 0.74 +0.5 3,512,218 + gph b3385 0.74 -0.6 3,512,226 - gph b3385 0.75 +1.1 3,512,226 - gph b3385 0.75 +2.5 3,512,235 + gph b3385 0.77 -0.3 3,512,246 + gph b3385 0.78 +0.2 3,512,295 + gph b3385 0.85 -0.7 3,512,295 + gph b3385 0.85 -0.6 3,512,313 - gph b3385 0.87 +0.0 3,512,313 - gph b3385 0.87 -0.8 3,512,345 + +0.3 3,512,345 + -2.6 3,512,352 + -0.6 3,512,358 - +0.7 3,512,360 - -0.7 3,512,360 - -0.1 3,512,368 - +0.8 3,512,425 - -0.6
Or see this region's nucleotide sequence