Strain Fitness in Escherichia coli BW25113 around b3340

Experiment: LB, Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttufA and fusA are separated by 70 nucleotidesfusA and rpsG are separated by 27 nucleotidesrpsG and rpsL are separated by 96 nucleotides b3339: tufA - protein chain elongation factor EF-Tu (duplicate of tufB) (NCBI), at 3,468,167 to 3,469,351 tufA b3340: fusA - elongation factor EF-2 (NCBI), at 3,469,422 to 3,471,536 fusA b3341: rpsG - 30S ribosomal protein S7 (NCBI), at 3,471,564 to 3,472,103 rpsG b3342: rpsL - 30S ribosomal protein S12 (NCBI), at 3,472,200 to 3,472,574 rpsL Position (kb) 3469 3470 3471 3472Strain fitness (log2 ratio) -1 0 1 2at 3469.374 kb on - strandat 3469.376 kb on - strandat 3469.376 kb on - strandat 3469.389 kb on - strandat 3469.420 kb on - strandat 3469.432 kb on - strandat 3469.432 kb on - strandat 3469.444 kb on - strandat 3469.454 kb on - strandat 3471.616 kb on - strandat 3471.643 kb on - strand, within rpsGat 3471.643 kb on - strand, within rpsGat 3471.645 kb on - strandat 3471.645 kb on - strand, within rpsGat 3472.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
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3,469,374 - +1.5
3,469,376 - +1.8
3,469,376 - +0.3
3,469,389 - -0.4
3,469,420 - -0.9
3,469,432 - +0.9
3,469,432 - -0.2
3,469,444 - +0.5
3,469,454 - +2.1
3,471,616 - -0.3
3,471,643 - rpsG b3341 0.15 +1.1
3,471,643 - rpsG b3341 0.15 -0.2
3,471,645 - +1.1
3,471,645 - rpsG b3341 0.15 -0.2
3,472,212 - +2.1

Or see this region's nucleotide sequence