Experiment: LB, Aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xseA and b2510 overlap by 4 nucleotides b2510 and b2511 are separated by 69 nucleotides b2511 and yfgL are separated by 117 nucleotides
b2509: xseA - exodeoxyribonuclease VII large subunit (NCBI), at 2,632,254 to 2,633,624
xseA
b2510: b2510 - orf, hypothetical protein (VIMSS), at 2,633,621 to 2,633,836
b2510
b2511: b2511 - putative GTP-binding factor (VIMSS), at 2,633,906 to 2,635,378
b2511
b2512: yfgL - protein assembly complex, lipoprotein component (NCBI), at 2,635,496 to 2,636,674
yfgL
Position (kb)
2633
2634
2635
2636 Strain fitness (log2 ratio)
-1
0
1 at 2632.911 kb on + strand, within xseA at 2632.969 kb on + strand, within xseA at 2633.042 kb on - strand, within xseA at 2633.126 kb on + strand, within xseA at 2633.166 kb on - strand, within xseA at 2633.387 kb on + strand, within xseA at 2633.387 kb on + strand, within xseA at 2633.427 kb on - strand, within xseA at 2633.427 kb on - strand, within xseA at 2633.440 kb on + strand, within xseA at 2633.691 kb on + strand, within b2510 at 2633.721 kb on - strand, within b2510 at 2633.787 kb on + strand, within b2510 at 2633.787 kb on + strand, within b2510 at 2633.795 kb on - strand, within b2510 at 2633.805 kb on - strand, within b2510 at 2635.526 kb on - strand at 2635.608 kb on - strand at 2635.787 kb on - strand, within yfgL at 2635.787 kb on - strand, within yfgL at 2635.892 kb on - strand, within yfgL at 2635.892 kb on - strand, within yfgL at 2636.030 kb on - strand, within yfgL at 2636.078 kb on - strand, within yfgL at 2636.167 kb on - strand, within yfgL at 2636.230 kb on - strand, within yfgL at 2636.230 kb on - strand, within yfgL at 2636.264 kb on - strand, within yfgL at 2636.264 kb on - strand, within yfgL at 2636.268 kb on - strand, within yfgL at 2636.268 kb on - strand, within yfgL at 2636.312 kb on - strand, within yfgL at 2636.355 kb on - strand, within yfgL
Per-strain Table
Position Strand Gene LocusTag Fraction LB, Aerobic remove 2,632,911 + xseA b2509 0.48 -0.0 2,632,969 + xseA b2509 0.52 -0.8 2,633,042 - xseA b2509 0.57 -0.6 2,633,126 + xseA b2509 0.64 -0.0 2,633,166 - xseA b2509 0.67 -0.9 2,633,387 + xseA b2509 0.83 +0.7 2,633,387 + xseA b2509 0.83 +0.1 2,633,427 - xseA b2509 0.86 -0.3 2,633,427 - xseA b2509 0.86 -0.3 2,633,440 + xseA b2509 0.87 +0.1 2,633,691 + b2510 b2510 0.32 +0.4 2,633,721 - b2510 b2510 0.46 -0.7 2,633,787 + b2510 b2510 0.77 +0.4 2,633,787 + b2510 b2510 0.77 +1.7 2,633,795 - b2510 b2510 0.81 -0.4 2,633,805 - b2510 b2510 0.85 -0.9 2,635,526 - -1.6 2,635,608 - +0.1 2,635,787 - yfgL b2512 0.25 +0.2 2,635,787 - yfgL b2512 0.25 -0.8 2,635,892 - yfgL b2512 0.34 -1.0 2,635,892 - yfgL b2512 0.34 +1.5 2,636,030 - yfgL b2512 0.45 -0.8 2,636,078 - yfgL b2512 0.49 -0.2 2,636,167 - yfgL b2512 0.57 -1.5 2,636,230 - yfgL b2512 0.62 -0.4 2,636,230 - yfgL b2512 0.62 -1.6 2,636,264 - yfgL b2512 0.65 +0.1 2,636,264 - yfgL b2512 0.65 -1.1 2,636,268 - yfgL b2512 0.65 -0.7 2,636,268 - yfgL b2512 0.65 +0.1 2,636,312 - yfgL b2512 0.69 -1.5 2,636,355 - yfgL b2512 0.73 +0.4
Or see this region's nucleotide sequence