Strain Fitness in Escherichia coli BW25113 around b2511

Experiment: LB, Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxseA and b2510 overlap by 4 nucleotidesb2510 and b2511 are separated by 69 nucleotidesb2511 and yfgL are separated by 117 nucleotides b2509: xseA - exodeoxyribonuclease VII large subunit (NCBI), at 2,632,254 to 2,633,624 xseA b2510: b2510 - orf, hypothetical protein (VIMSS), at 2,633,621 to 2,633,836 b2510 b2511: b2511 - putative GTP-binding factor (VIMSS), at 2,633,906 to 2,635,378 b2511 b2512: yfgL - protein assembly complex, lipoprotein component (NCBI), at 2,635,496 to 2,636,674 yfgL Position (kb) 2633 2634 2635 2636Strain fitness (log2 ratio) -1 0 1at 2632.911 kb on + strand, within xseAat 2632.969 kb on + strand, within xseAat 2633.042 kb on - strand, within xseAat 2633.126 kb on + strand, within xseAat 2633.166 kb on - strand, within xseAat 2633.387 kb on + strand, within xseAat 2633.387 kb on + strand, within xseAat 2633.427 kb on - strand, within xseAat 2633.427 kb on - strand, within xseAat 2633.440 kb on + strand, within xseAat 2633.691 kb on + strand, within b2510at 2633.721 kb on - strand, within b2510at 2633.787 kb on + strand, within b2510at 2633.787 kb on + strand, within b2510at 2633.795 kb on - strand, within b2510at 2633.805 kb on - strand, within b2510at 2635.526 kb on - strandat 2635.608 kb on - strandat 2635.787 kb on - strand, within yfgLat 2635.787 kb on - strand, within yfgLat 2635.892 kb on - strand, within yfgLat 2635.892 kb on - strand, within yfgLat 2636.030 kb on - strand, within yfgLat 2636.078 kb on - strand, within yfgLat 2636.167 kb on - strand, within yfgLat 2636.230 kb on - strand, within yfgLat 2636.230 kb on - strand, within yfgLat 2636.264 kb on - strand, within yfgLat 2636.264 kb on - strand, within yfgLat 2636.268 kb on - strand, within yfgLat 2636.268 kb on - strand, within yfgLat 2636.312 kb on - strand, within yfgLat 2636.355 kb on - strand, within yfgL

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
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2,632,911 + xseA b2509 0.48 -0.0
2,632,969 + xseA b2509 0.52 -0.8
2,633,042 - xseA b2509 0.57 -0.6
2,633,126 + xseA b2509 0.64 -0.0
2,633,166 - xseA b2509 0.67 -0.9
2,633,387 + xseA b2509 0.83 +0.7
2,633,387 + xseA b2509 0.83 +0.1
2,633,427 - xseA b2509 0.86 -0.3
2,633,427 - xseA b2509 0.86 -0.3
2,633,440 + xseA b2509 0.87 +0.1
2,633,691 + b2510 b2510 0.32 +0.4
2,633,721 - b2510 b2510 0.46 -0.7
2,633,787 + b2510 b2510 0.77 +0.4
2,633,787 + b2510 b2510 0.77 +1.7
2,633,795 - b2510 b2510 0.81 -0.4
2,633,805 - b2510 b2510 0.85 -0.9
2,635,526 - -1.6
2,635,608 - +0.1
2,635,787 - yfgL b2512 0.25 +0.2
2,635,787 - yfgL b2512 0.25 -0.8
2,635,892 - yfgL b2512 0.34 -1.0
2,635,892 - yfgL b2512 0.34 +1.5
2,636,030 - yfgL b2512 0.45 -0.8
2,636,078 - yfgL b2512 0.49 -0.2
2,636,167 - yfgL b2512 0.57 -1.5
2,636,230 - yfgL b2512 0.62 -0.4
2,636,230 - yfgL b2512 0.62 -1.6
2,636,264 - yfgL b2512 0.65 +0.1
2,636,264 - yfgL b2512 0.65 -1.1
2,636,268 - yfgL b2512 0.65 -0.7
2,636,268 - yfgL b2512 0.65 +0.1
2,636,312 - yfgL b2512 0.69 -1.5
2,636,355 - yfgL b2512 0.73 +0.4

Or see this region's nucleotide sequence