Experiment: LB, Aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cutC and yecM are separated by 13 nucleotides yecM and argS are separated by 215 nucleotides argS and yecT are separated by 176 nucleotides yecT and flhE are separated by 119 nucleotides
b1874: cutC - copper homeostasis protein (NCBI), at 1,956,544 to 1,957,290
cutC
b1875: yecM - orf, hypothetical protein (VIMSS), at 1,957,304 to 1,957,870
yecM
b1876: argS - arginyl-tRNA synthetase (NCBI), at 1,958,086 to 1,959,819
argS
b1877: yecT - orf, hypothetical protein (VIMSS), at 1,959,996 to 1,960,484
yecT
b1878: flhE - hypothetical protein (NCBI), at 1,960,604 to 1,960,996
flhE
Position (kb)
1958
1959
1960 Strain fitness (log2 ratio)
-1
0
1
2 at 1957.248 kb on + strand at 1957.416 kb on + strand, within yecM at 1957.473 kb on - strand, within yecM at 1957.588 kb on - strand, within yecM at 1957.677 kb on + strand, within yecM at 1957.760 kb on - strand, within yecM at 1957.810 kb on - strand, within yecM at 1957.810 kb on - strand, within yecM at 1958.016 kb on + strand at 1959.835 kb on + strand at 1959.850 kb on + strand at 1959.850 kb on + strand at 1959.881 kb on + strand at 1959.887 kb on - strand at 1959.907 kb on + strand at 1959.932 kb on - strand at 1959.960 kb on + strand at 1959.979 kb on + strand at 1960.031 kb on + strand at 1960.035 kb on + strand at 1960.035 kb on + strand at 1960.040 kb on + strand at 1960.040 kb on + strand at 1960.067 kb on - strand, within yecT at 1960.079 kb on - strand, within yecT at 1960.079 kb on - strand, within yecT at 1960.120 kb on + strand, within yecT at 1960.129 kb on + strand, within yecT at 1960.144 kb on + strand, within yecT at 1960.274 kb on - strand, within yecT at 1960.274 kb on - strand, within yecT at 1960.357 kb on + strand, within yecT at 1960.358 kb on + strand, within yecT at 1960.372 kb on - strand, within yecT at 1960.390 kb on + strand, within yecT at 1960.390 kb on + strand, within yecT at 1960.391 kb on + strand, within yecT at 1960.431 kb on + strand, within yecT at 1960.439 kb on + strand at 1960.511 kb on - strand at 1960.511 kb on - strand at 1960.560 kb on - strand at 1960.646 kb on - strand, within flhE at 1960.680 kb on - strand, within flhE at 1960.723 kb on - strand, within flhE at 1960.723 kb on - strand, within flhE at 1960.813 kb on + strand, within flhE
Per-strain Table
Position Strand Gene LocusTag Fraction LB, Aerobic remove 1,957,248 + +0.3 1,957,416 + yecM b1875 0.20 +1.2 1,957,473 - yecM b1875 0.30 -0.8 1,957,588 - yecM b1875 0.50 -0.9 1,957,677 + yecM b1875 0.66 +0.1 1,957,760 - yecM b1875 0.80 +0.1 1,957,810 - yecM b1875 0.89 +0.8 1,957,810 - yecM b1875 0.89 +0.2 1,958,016 + -0.4 1,959,835 + -0.4 1,959,850 + -0.2 1,959,850 + +0.7 1,959,881 + -0.1 1,959,887 - -0.9 1,959,907 + +1.5 1,959,932 - +1.5 1,959,960 + -0.1 1,959,979 + -0.0 1,960,031 + +1.5 1,960,035 + +1.5 1,960,035 + +1.5 1,960,040 + +1.5 1,960,040 + +1.5 1,960,067 - yecT b1877 0.15 -0.1 1,960,079 - yecT b1877 0.17 -0.1 1,960,079 - yecT b1877 0.17 +0.5 1,960,120 + yecT b1877 0.25 +2.5 1,960,129 + yecT b1877 0.27 +0.5 1,960,144 + yecT b1877 0.30 +1.5 1,960,274 - yecT b1877 0.57 -0.5 1,960,274 - yecT b1877 0.57 -0.1 1,960,357 + yecT b1877 0.74 +0.5 1,960,358 + yecT b1877 0.74 +1.5 1,960,372 - yecT b1877 0.77 -0.9 1,960,390 + yecT b1877 0.81 +1.5 1,960,390 + yecT b1877 0.81 +1.5 1,960,391 + yecT b1877 0.81 +1.5 1,960,431 + yecT b1877 0.89 +0.5 1,960,439 + -0.9 1,960,511 - +0.1 1,960,511 - -0.1 1,960,560 - -0.4 1,960,646 - flhE b1878 0.11 -0.6 1,960,680 - flhE b1878 0.19 -0.0 1,960,723 - flhE b1878 0.30 -0.5 1,960,723 - flhE b1878 0.30 +0.4 1,960,813 + flhE b1878 0.53 +1.2
Or see this region's nucleotide sequence