Strain Fitness in Escherichia coli BW25113 around b1876

Experiment: LB, Aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntcutC and yecM are separated by 13 nucleotidesyecM and argS are separated by 215 nucleotidesargS and yecT are separated by 176 nucleotidesyecT and flhE are separated by 119 nucleotides b1874: cutC - copper homeostasis protein (NCBI), at 1,956,544 to 1,957,290 cutC b1875: yecM - orf, hypothetical protein (VIMSS), at 1,957,304 to 1,957,870 yecM b1876: argS - arginyl-tRNA synthetase (NCBI), at 1,958,086 to 1,959,819 argS b1877: yecT - orf, hypothetical protein (VIMSS), at 1,959,996 to 1,960,484 yecT b1878: flhE - hypothetical protein (NCBI), at 1,960,604 to 1,960,996 flhE Position (kb) 1958 1959 1960Strain fitness (log2 ratio) -1 0 1 2at 1957.248 kb on + strandat 1957.416 kb on + strand, within yecMat 1957.473 kb on - strand, within yecMat 1957.588 kb on - strand, within yecMat 1957.677 kb on + strand, within yecMat 1957.760 kb on - strand, within yecMat 1957.810 kb on - strand, within yecMat 1957.810 kb on - strand, within yecMat 1958.016 kb on + strandat 1959.835 kb on + strandat 1959.850 kb on + strandat 1959.850 kb on + strandat 1959.881 kb on + strandat 1959.887 kb on - strandat 1959.907 kb on + strandat 1959.932 kb on - strandat 1959.960 kb on + strandat 1959.979 kb on + strandat 1960.031 kb on + strandat 1960.035 kb on + strandat 1960.035 kb on + strandat 1960.040 kb on + strandat 1960.040 kb on + strandat 1960.067 kb on - strand, within yecTat 1960.079 kb on - strand, within yecTat 1960.079 kb on - strand, within yecTat 1960.120 kb on + strand, within yecTat 1960.129 kb on + strand, within yecTat 1960.144 kb on + strand, within yecTat 1960.274 kb on - strand, within yecTat 1960.274 kb on - strand, within yecTat 1960.357 kb on + strand, within yecTat 1960.358 kb on + strand, within yecTat 1960.372 kb on - strand, within yecTat 1960.390 kb on + strand, within yecTat 1960.390 kb on + strand, within yecTat 1960.391 kb on + strand, within yecTat 1960.431 kb on + strand, within yecTat 1960.439 kb on + strandat 1960.511 kb on - strandat 1960.511 kb on - strandat 1960.560 kb on - strandat 1960.646 kb on - strand, within flhEat 1960.680 kb on - strand, within flhEat 1960.723 kb on - strand, within flhEat 1960.723 kb on - strand, within flhEat 1960.813 kb on + strand, within flhE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
remove
1,957,248 + +0.3
1,957,416 + yecM b1875 0.20 +1.2
1,957,473 - yecM b1875 0.30 -0.8
1,957,588 - yecM b1875 0.50 -0.9
1,957,677 + yecM b1875 0.66 +0.1
1,957,760 - yecM b1875 0.80 +0.1
1,957,810 - yecM b1875 0.89 +0.8
1,957,810 - yecM b1875 0.89 +0.2
1,958,016 + -0.4
1,959,835 + -0.4
1,959,850 + -0.2
1,959,850 + +0.7
1,959,881 + -0.1
1,959,887 - -0.9
1,959,907 + +1.5
1,959,932 - +1.5
1,959,960 + -0.1
1,959,979 + -0.0
1,960,031 + +1.5
1,960,035 + +1.5
1,960,035 + +1.5
1,960,040 + +1.5
1,960,040 + +1.5
1,960,067 - yecT b1877 0.15 -0.1
1,960,079 - yecT b1877 0.17 -0.1
1,960,079 - yecT b1877 0.17 +0.5
1,960,120 + yecT b1877 0.25 +2.5
1,960,129 + yecT b1877 0.27 +0.5
1,960,144 + yecT b1877 0.30 +1.5
1,960,274 - yecT b1877 0.57 -0.5
1,960,274 - yecT b1877 0.57 -0.1
1,960,357 + yecT b1877 0.74 +0.5
1,960,358 + yecT b1877 0.74 +1.5
1,960,372 - yecT b1877 0.77 -0.9
1,960,390 + yecT b1877 0.81 +1.5
1,960,390 + yecT b1877 0.81 +1.5
1,960,391 + yecT b1877 0.81 +1.5
1,960,431 + yecT b1877 0.89 +0.5
1,960,439 + -0.9
1,960,511 - +0.1
1,960,511 - -0.1
1,960,560 - -0.4
1,960,646 - flhE b1878 0.11 -0.6
1,960,680 - flhE b1878 0.19 -0.0
1,960,723 - flhE b1878 0.30 -0.5
1,960,723 - flhE b1878 0.30 +0.4
1,960,813 + flhE b1878 0.53 +1.2

Or see this region's nucleotide sequence