Strain Fitness in Escherichia coli BW25113 around b1736

Experiment: LB, Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntchbF and chbR are separated by 104 nucleotideschbR and chbA are separated by 7 nucleotideschbA and chbC are separated by 50 nucleotides b1734: chbF - cryptic phospho-beta-glucosidase, NAD(P)-binding (NCBI), at 1,815,172 to 1,816,524 chbF b1735: chbR - DNA-binding transcriptional dual regulator (NCBI), at 1,816,629 to 1,817,471 chbR b1736: chbA - N,N'-diacetylchitobiose-specific enzyme IIA component of PTS (NCBI), at 1,817,479 to 1,817,829 chbA b1737: chbC - N,N'-diacetylchitobiose-specific enzyme IIC component of PTS (NCBI), at 1,817,880 to 1,819,238 chbC Position (kb) 1817 1818Strain fitness (log2 ratio) -2 -1 0 1 2at 1816.954 kb on - strand, within chbRat 1816.977 kb on - strand, within chbRat 1816.977 kb on - strand, within chbRat 1816.982 kb on - strand, within chbRat 1816.982 kb on - strand, within chbRat 1817.004 kb on - strand, within chbRat 1817.053 kb on - strand, within chbRat 1817.053 kb on - strand, within chbRat 1817.156 kb on + strand, within chbRat 1817.217 kb on - strand, within chbRat 1817.217 kb on - strand, within chbRat 1817.278 kb on - strand, within chbRat 1817.298 kb on - strand, within chbRat 1817.363 kb on - strand, within chbRat 1817.387 kb on - strandat 1817.387 kb on - strandat 1817.431 kb on - strandat 1817.431 kb on - strandat 1817.431 kb on - strandat 1817.469 kb on - strandat 1817.471 kb on - strandat 1817.483 kb on - strandat 1817.483 kb on - strandat 1817.485 kb on - strandat 1817.485 kb on - strandat 1817.486 kb on - strandat 1817.557 kb on - strand, within chbAat 1817.848 kb on - strandat 1817.858 kb on + strandat 1817.952 kb on - strandat 1817.967 kb on - strandat 1818.012 kb on - strandat 1818.076 kb on + strand, within chbCat 1818.082 kb on - strand, within chbCat 1818.082 kb on - strand, within chbCat 1818.202 kb on - strand, within chbCat 1818.202 kb on - strand, within chbCat 1818.332 kb on + strand, within chbCat 1818.332 kb on + strand, within chbCat 1818.421 kb on - strand, within chbCat 1818.470 kb on - strand, within chbCat 1818.531 kb on + strand, within chbCat 1818.531 kb on + strand, within chbCat 1818.538 kb on - strand, within chbCat 1818.555 kb on - strand, within chbCat 1818.555 kb on - strand, within chbCat 1818.575 kb on - strand, within chbCat 1818.577 kb on + strand, within chbCat 1818.689 kb on + strand, within chbCat 1818.689 kb on + strand, within chbCat 1818.697 kb on - strand, within chbCat 1818.702 kb on - strand, within chbCat 1818.702 kb on - strand, within chbCat 1818.706 kb on + strand, within chbCat 1818.820 kb on - strand, within chbC

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
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1,816,954 - chbR b1735 0.39 -0.6
1,816,977 - chbR b1735 0.41 +0.4
1,816,977 - chbR b1735 0.41 +1.4
1,816,982 - chbR b1735 0.42 -0.6
1,816,982 - chbR b1735 0.42 +0.4
1,817,004 - chbR b1735 0.44 +2.0
1,817,053 - chbR b1735 0.50 -1.4
1,817,053 - chbR b1735 0.50 +1.4
1,817,156 + chbR b1735 0.63 +1.4
1,817,217 - chbR b1735 0.70 +1.4
1,817,217 - chbR b1735 0.70 -1.8
1,817,278 - chbR b1735 0.77 +2.4
1,817,298 - chbR b1735 0.79 +1.4
1,817,363 - chbR b1735 0.87 +0.1
1,817,387 - +0.1
1,817,387 - +1.1
1,817,431 - +0.4
1,817,431 - -0.2
1,817,431 - -0.5
1,817,469 - +0.7
1,817,471 - +0.7
1,817,483 - -0.5
1,817,483 - +0.5
1,817,485 - -0.2
1,817,485 - -0.0
1,817,486 - -0.6
1,817,557 - chbA b1736 0.22 +0.4
1,817,848 - -0.2
1,817,858 + -0.5
1,817,952 - -0.2
1,817,967 - -0.7
1,818,012 - -0.1
1,818,076 + chbC b1737 0.14 +1.4
1,818,082 - chbC b1737 0.15 +0.3
1,818,082 - chbC b1737 0.15 +0.8
1,818,202 - chbC b1737 0.24 +0.2
1,818,202 - chbC b1737 0.24 +0.1
1,818,332 + chbC b1737 0.33 +0.2
1,818,332 + chbC b1737 0.33 -0.4
1,818,421 - chbC b1737 0.40 +1.1
1,818,470 - chbC b1737 0.43 +0.0
1,818,531 + chbC b1737 0.48 +0.4
1,818,531 + chbC b1737 0.48 -0.4
1,818,538 - chbC b1737 0.48 -0.2
1,818,555 - chbC b1737 0.50 +2.4
1,818,555 - chbC b1737 0.50 +0.8
1,818,575 - chbC b1737 0.51 -0.6
1,818,577 + chbC b1737 0.51 +0.1
1,818,689 + chbC b1737 0.60 +1.4
1,818,689 + chbC b1737 0.60 +1.4
1,818,697 - chbC b1737 0.60 -0.2
1,818,702 - chbC b1737 0.60 +1.4
1,818,702 - chbC b1737 0.60 +1.4
1,818,706 + chbC b1737 0.61 -0.2
1,818,820 - chbC b1737 0.69 -0.2

Or see this region's nucleotide sequence