Strain Fitness in Escherichia coli BW25113 around b1646

Experiment: LB, Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydhK and sodC are separated by 0 nucleotidessodC and ydhF are separated by 80 nucleotides b1645: ydhK - conserved inner membrane protein (NCBI), at 1,720,145 to 1,722,157 ydhK b1646: sodC - superoxide dismutase, Cu, Zn (NCBI), at 1,722,158 to 1,722,679 sodC b1647: ydhF - predicted oxidoreductase (NCBI), at 1,722,760 to 1,723,656 ydhF Position (kb) 1722 1723Strain fitness (log2 ratio) -1 0 1 2at 1721.170 kb on - strand, within ydhKat 1721.197 kb on + strand, within ydhKat 1721.225 kb on - strand, within ydhKat 1721.225 kb on - strand, within ydhKat 1721.272 kb on + strand, within ydhKat 1721.272 kb on + strand, within ydhKat 1721.272 kb on + strand, within ydhKat 1721.338 kb on + strand, within ydhKat 1721.343 kb on - strand, within ydhKat 1721.676 kb on + strand, within ydhKat 1721.722 kb on + strand, within ydhKat 1721.722 kb on + strand, within ydhKat 1721.762 kb on - strand, within ydhKat 1721.805 kb on - strand, within ydhKat 1721.805 kb on - strand, within ydhKat 1721.877 kb on - strand, within ydhKat 1721.877 kb on - strand, within ydhKat 1721.941 kb on + strand, within ydhKat 1722.103 kb on - strandat 1722.176 kb on + strandat 1722.692 kb on - strandat 1722.692 kb on - strandat 1722.868 kb on - strand, within ydhFat 1722.868 kb on - strand, within ydhFat 1722.904 kb on - strand, within ydhFat 1722.904 kb on - strand, within ydhFat 1723.132 kb on + strand, within ydhFat 1723.138 kb on - strand, within ydhFat 1723.490 kb on + strand, within ydhF

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
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1,721,170 - ydhK b1645 0.51 -0.3
1,721,197 + ydhK b1645 0.52 -1.3
1,721,225 - ydhK b1645 0.54 -0.2
1,721,225 - ydhK b1645 0.54 +0.3
1,721,272 + ydhK b1645 0.56 +0.2
1,721,272 + ydhK b1645 0.56 +0.0
1,721,272 + ydhK b1645 0.56 -0.5
1,721,338 + ydhK b1645 0.59 +0.4
1,721,343 - ydhK b1645 0.60 +0.4
1,721,676 + ydhK b1645 0.76 +0.0
1,721,722 + ydhK b1645 0.78 -1.2
1,721,722 + ydhK b1645 0.78 +0.8
1,721,762 - ydhK b1645 0.80 +1.8
1,721,805 - ydhK b1645 0.82 +0.5
1,721,805 - ydhK b1645 0.82 -0.6
1,721,877 - ydhK b1645 0.86 +0.1
1,721,877 - ydhK b1645 0.86 -0.0
1,721,941 + ydhK b1645 0.89 +0.2
1,722,103 - -0.4
1,722,176 + -0.0
1,722,692 - +0.9
1,722,692 - -0.5
1,722,868 - ydhF b1647 0.12 +1.1
1,722,868 - ydhF b1647 0.12 -0.1
1,722,904 - ydhF b1647 0.16 -0.2
1,722,904 - ydhF b1647 0.16 +0.2
1,723,132 + ydhF b1647 0.41 -0.0
1,723,138 - ydhF b1647 0.42 -0.1
1,723,490 + ydhF b1647 0.81 -0.3

Or see this region's nucleotide sequence