Strain Fitness in Escherichia coli BW25113 around b1267

Experiment: LB, Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyciV and yciO overlap by 4 nucleotidesyciO and yciQ are separated by 27 nucleotides b1266: yciV - hypothetical protein (NCBI), at 1,321,244 to 1,322,125 yciV b1267: yciO - orf, hypothetical protein (VIMSS), at 1,322,122 to 1,322,742 yciO b1268: yciQ - predicted inner membrane protein (NCBI), at 1,322,770 to 1,324,665 yciQ Position (kb) 1322 1323Strain fitness (log2 ratio) -2 -1 0 1 2at 1321.257 kb on + strandat 1321.332 kb on + strandat 1321.332 kb on + strandat 1321.378 kb on + strand, within yciVat 1321.381 kb on + strand, within yciVat 1321.537 kb on - strand, within yciVat 1321.537 kb on - strand, within yciVat 1321.697 kb on + strand, within yciVat 1321.935 kb on - strand, within yciVat 1322.096 kb on + strandat 1322.096 kb on + strandat 1322.161 kb on - strandat 1322.231 kb on + strand, within yciOat 1322.708 kb on + strandat 1322.713 kb on + strandat 1322.766 kb on - strandat 1322.814 kb on + strandat 1322.880 kb on + strandat 1322.880 kb on + strandat 1323.017 kb on + strand, within yciQat 1323.232 kb on + strand, within yciQat 1323.240 kb on - strand, within yciQat 1323.364 kb on + strand, within yciQat 1323.420 kb on + strand, within yciQat 1323.420 kb on + strand, within yciQat 1323.421 kb on + strand, within yciQat 1323.421 kb on + strand, within yciQat 1323.428 kb on - strand, within yciQat 1323.428 kb on - strand, within yciQat 1323.491 kb on + strand, within yciQat 1323.543 kb on + strand, within yciQat 1323.571 kb on - strand, within yciQat 1323.650 kb on - strand, within yciQat 1323.742 kb on + strand, within yciQ

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
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1,321,257 + -0.3
1,321,332 + -0.5
1,321,332 + -0.4
1,321,378 + yciV b1266 0.15 -0.1
1,321,381 + yciV b1266 0.16 +2.0
1,321,537 - yciV b1266 0.33 -1.2
1,321,537 - yciV b1266 0.33 +0.4
1,321,697 + yciV b1266 0.51 +0.4
1,321,935 - yciV b1266 0.78 -0.1
1,322,096 + -0.3
1,322,096 + +0.4
1,322,161 - -0.2
1,322,231 + yciO b1267 0.18 +0.7
1,322,708 + -0.4
1,322,713 + -1.1
1,322,766 - +0.2
1,322,814 + +0.7
1,322,880 + -0.7
1,322,880 + -0.7
1,323,017 + yciQ b1268 0.13 -0.5
1,323,232 + yciQ b1268 0.24 +0.8
1,323,240 - yciQ b1268 0.25 +1.4
1,323,364 + yciQ b1268 0.31 +0.2
1,323,420 + yciQ b1268 0.34 -1.2
1,323,420 + yciQ b1268 0.34 -1.2
1,323,421 + yciQ b1268 0.34 -0.6
1,323,421 + yciQ b1268 0.34 -1.9
1,323,428 - yciQ b1268 0.35 +0.8
1,323,428 - yciQ b1268 0.35 +1.4
1,323,491 + yciQ b1268 0.38 +1.4
1,323,543 + yciQ b1268 0.41 -0.4
1,323,571 - yciQ b1268 0.42 +0.6
1,323,650 - yciQ b1268 0.46 -0.6
1,323,742 + yciQ b1268 0.51 +0.2

Or see this region's nucleotide sequence