Experiment: LB, Aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt galU and hns are separated by 143 nucleotides hns and tdk are separated by 604 nucleotides
b1236: galU - glucose-1-phosphate uridylyltransferase (NCBI), at 1,290,680 to 1,291,588
galU
b1237: hns - global DNA-binding transcriptional dual regulator H-NS (NCBI), at 1,291,732 to 1,292,145
hns
b1238: tdk - thymidine kinase (NCBI), at 1,292,750 to 1,293,367
tdk
Position (kb)
1291
1292
1293 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1290.737 kb on + strand at 1290.755 kb on + strand at 1290.775 kb on - strand, within galU at 1290.785 kb on - strand, within galU at 1290.903 kb on + strand, within galU at 1290.903 kb on + strand, within galU at 1290.969 kb on + strand, within galU at 1291.001 kb on + strand, within galU at 1291.027 kb on - strand, within galU at 1291.030 kb on + strand, within galU at 1291.044 kb on - strand, within galU at 1291.047 kb on + strand, within galU at 1291.048 kb on + strand, within galU at 1291.048 kb on + strand, within galU at 1291.048 kb on + strand at 1291.131 kb on + strand, within galU at 1291.139 kb on + strand, within galU at 1291.157 kb on + strand, within galU at 1291.182 kb on + strand, within galU at 1291.182 kb on + strand, within galU at 1291.209 kb on + strand, within galU at 1291.375 kb on + strand, within galU at 1291.375 kb on + strand at 1291.375 kb on + strand, within galU at 1291.412 kb on + strand, within galU at 1291.413 kb on + strand, within galU at 1291.460 kb on + strand, within galU at 1291.558 kb on + strand at 1291.558 kb on + strand at 1291.565 kb on + strand at 1291.565 kb on + strand at 1291.605 kb on + strand at 1291.605 kb on + strand at 1291.607 kb on - strand at 1291.625 kb on - strand at 1291.642 kb on - strand at 1291.646 kb on + strand at 1291.886 kb on - strand, within hns at 1292.167 kb on - strand at 1292.218 kb on + strand at 1292.319 kb on - strand at 1292.353 kb on - strand at 1292.383 kb on + strand at 1292.394 kb on + strand at 1292.401 kb on + strand at 1292.409 kb on - strand at 1292.417 kb on - strand at 1292.419 kb on - strand at 1292.469 kb on - strand at 1292.469 kb on - strand at 1292.481 kb on + strand at 1292.497 kb on - strand at 1292.504 kb on + strand at 1292.504 kb on + strand at 1292.508 kb on + strand at 1292.512 kb on - strand at 1292.512 kb on - strand at 1292.519 kb on + strand at 1292.522 kb on - strand at 1292.522 kb on - strand at 1292.527 kb on - strand at 1292.527 kb on - strand at 1292.532 kb on - strand at 1292.537 kb on - strand at 1292.549 kb on - strand at 1292.549 kb on - strand at 1292.552 kb on + strand at 1292.552 kb on - strand at 1292.562 kb on + strand at 1292.572 kb on + strand at 1292.592 kb on - strand at 1292.602 kb on + strand at 1292.604 kb on + strand at 1292.604 kb on + strand at 1292.623 kb on + strand at 1292.623 kb on + strand at 1292.627 kb on + strand at 1292.635 kb on - strand at 1292.644 kb on + strand at 1292.644 kb on + strand at 1292.645 kb on - strand at 1292.645 kb on - strand at 1292.645 kb on - strand at 1292.647 kb on + strand at 1292.652 kb on + strand at 1292.661 kb on + strand at 1292.661 kb on + strand at 1292.665 kb on - strand at 1292.665 kb on - strand at 1292.672 kb on - strand at 1292.682 kb on - strand at 1292.682 kb on - strand at 1292.700 kb on + strand at 1292.735 kb on - strand at 1292.738 kb on + strand at 1292.738 kb on + strand at 1292.739 kb on + strand at 1292.739 kb on + strand at 1292.749 kb on - strand at 1292.794 kb on + strand at 1292.794 kb on + strand at 1292.797 kb on - strand at 1292.798 kb on + strand at 1292.862 kb on - strand, within tdk at 1292.896 kb on - strand, within tdk at 1292.898 kb on + strand, within tdk at 1292.909 kb on + strand, within tdk at 1292.944 kb on - strand, within tdk at 1292.957 kb on + strand, within tdk at 1293.067 kb on + strand, within tdk at 1293.067 kb on + strand, within tdk
Per-strain Table
Position Strand Gene LocusTag Fraction LB, Aerobic remove 1,290,737 + +0.5 1,290,755 + +0.3 1,290,775 - galU b1236 0.10 -0.9 1,290,785 - galU b1236 0.12 +0.5 1,290,903 + galU b1236 0.25 +0.1 1,290,903 + galU b1236 0.25 -0.5 1,290,969 + galU b1236 0.32 +1.1 1,291,001 + galU b1236 0.35 -2.1 1,291,027 - galU b1236 0.38 +3.5 1,291,030 + galU b1236 0.39 -1.4 1,291,044 - galU b1236 0.40 +1.5 1,291,047 + galU b1236 0.40 -1.1 1,291,048 + galU b1236 0.40 +0.1 1,291,048 + galU b1236 0.40 -0.5 1,291,048 + -0.1 1,291,131 + galU b1236 0.50 +2.5 1,291,139 + galU b1236 0.50 +0.3 1,291,157 + galU b1236 0.52 -0.7 1,291,182 + galU b1236 0.55 -0.1 1,291,182 + galU b1236 0.55 -2.0 1,291,209 + galU b1236 0.58 -0.9 1,291,375 + galU b1236 0.76 +0.5 1,291,375 + +0.5 1,291,375 + galU b1236 0.76 -1.7 1,291,412 + galU b1236 0.81 -2.0 1,291,413 + galU b1236 0.81 -0.5 1,291,460 + galU b1236 0.86 -0.5 1,291,558 + +0.5 1,291,558 + +0.3 1,291,565 + +0.0 1,291,565 + +0.0 1,291,605 + +0.3 1,291,605 + +0.0 1,291,607 - +1.5 1,291,625 - +1.5 1,291,642 - -0.9 1,291,646 + -0.1 1,291,886 - hns b1237 0.37 +0.5 1,292,167 - -0.5 1,292,218 + -0.1 1,292,319 - +0.2 1,292,353 - -0.1 1,292,383 + -0.1 1,292,394 + +0.6 1,292,401 + +1.5 1,292,409 - +0.5 1,292,417 - +1.5 1,292,419 - +1.5 1,292,469 - +0.9 1,292,469 - -1.1 1,292,481 + -0.1 1,292,497 - +0.2 1,292,504 + +0.2 1,292,504 + -1.1 1,292,508 + -0.1 1,292,512 - +0.5 1,292,512 - -0.9 1,292,519 + +1.5 1,292,522 - +0.6 1,292,522 - -0.3 1,292,527 - +0.9 1,292,527 - +0.8 1,292,532 - +0.1 1,292,537 - +1.5 1,292,549 - -0.4 1,292,549 - +0.2 1,292,552 + -0.5 1,292,552 - -0.3 1,292,562 + -0.5 1,292,572 + +1.5 1,292,592 - +0.5 1,292,602 + +0.5 1,292,604 + +1.5 1,292,604 + +1.5 1,292,623 + +0.6 1,292,623 + +0.7 1,292,627 + -0.0 1,292,635 - +1.5 1,292,644 + -0.4 1,292,644 + +0.3 1,292,645 - +1.5 1,292,645 - +1.5 1,292,645 - -0.1 1,292,647 + -1.5 1,292,652 + -0.9 1,292,661 + +0.6 1,292,661 + -0.1 1,292,665 - -0.1 1,292,665 - +1.5 1,292,672 - +1.5 1,292,682 - +1.5 1,292,682 - +1.5 1,292,700 + -1.1 1,292,735 - +0.5 1,292,738 + +1.5 1,292,738 + +0.5 1,292,739 + +0.5 1,292,739 + +0.5 1,292,749 - +0.5 1,292,794 + -0.4 1,292,794 + +0.9 1,292,797 - -0.1 1,292,798 + -0.9 1,292,862 - tdk b1238 0.18 +1.5 1,292,896 - tdk b1238 0.24 +1.5 1,292,898 + tdk b1238 0.24 -0.4 1,292,909 + tdk b1238 0.26 -0.3 1,292,944 - tdk b1238 0.31 +0.1 1,292,957 + tdk b1238 0.33 +0.5 1,293,067 + tdk b1238 0.51 +1.5 1,293,067 + tdk b1238 0.51 +1.5
Or see this region's nucleotide sequence