Strain Fitness in Escherichia coli BW25113 around b1051

Experiment: LB, Aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdoH and yceK are separated by 172 nucleotidesyceK and msyB are separated by 0 nucleotidesmsyB and mdtG are separated by 82 nucleotides b1049: mdoH - glucosyltransferase MdoH (NCBI), at 1,110,086 to 1,112,629 mdoH b1050: yceK - predicted lipoprotein (NCBI), at 1,112,802 to 1,113,029 yceK b1051: msyB - acidic protein suppresses mutants lacking function of protein export (VIMSS), at 1,113,030 to 1,113,404 msyB b1053: mdtG - predicted drug efflux system (NCBI), at 1,113,487 to 1,114,713 mdtG Position (kb) 1113 1114Strain fitness (log2 ratio) -1 0 1 2 3at 1112.054 kb on + strand, within mdoHat 1112.082 kb on + strand, within mdoHat 1112.085 kb on - strand, within mdoHat 1112.096 kb on + strand, within mdoHat 1112.136 kb on - strand, within mdoHat 1112.162 kb on - strand, within mdoHat 1112.178 kb on + strand, within mdoHat 1112.261 kb on - strand, within mdoHat 1112.269 kb on + strand, within mdoHat 1112.344 kb on - strand, within mdoHat 1112.478 kb on + strandat 1112.561 kb on - strandat 1112.670 kb on - strandat 1112.866 kb on + strand, within yceKat 1113.040 kb on + strandat 1113.040 kb on + strandat 1113.311 kb on - strand, within msyBat 1113.311 kb on - strand, within msyBat 1113.450 kb on - strandat 1113.524 kb on - strandat 1113.533 kb on + strandat 1113.533 kb on + strandat 1113.665 kb on - strandat 1113.703 kb on - strand, within mdtGat 1113.816 kb on + strand, within mdtGat 1113.893 kb on - strand, within mdtGat 1113.915 kb on + strand, within mdtGat 1113.915 kb on + strand, within mdtGat 1114.083 kb on - strand, within mdtGat 1114.083 kb on - strand, within mdtGat 1114.104 kb on + strand, within mdtGat 1114.136 kb on + strand, within mdtGat 1114.136 kb on + strand, within mdtGat 1114.274 kb on + strand, within mdtG

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, Aerobic
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1,112,054 + mdoH b1049 0.77 -0.1
1,112,082 + mdoH b1049 0.78 -0.6
1,112,085 - mdoH b1049 0.79 -1.2
1,112,096 + mdoH b1049 0.79 +0.1
1,112,136 - mdoH b1049 0.81 -0.5
1,112,162 - mdoH b1049 0.82 +1.5
1,112,178 + mdoH b1049 0.82 +0.1
1,112,261 - mdoH b1049 0.85 +0.5
1,112,269 + mdoH b1049 0.86 -0.7
1,112,344 - mdoH b1049 0.89 +0.2
1,112,478 + -1.0
1,112,561 - -1.1
1,112,670 - +0.7
1,112,866 + yceK b1050 0.28 -1.3
1,113,040 + +0.2
1,113,040 + +3.1
1,113,311 - msyB b1051 0.75 +1.1
1,113,311 - msyB b1051 0.75 +0.5
1,113,450 - -0.4
1,113,524 - +0.9
1,113,533 + -0.9
1,113,533 + +1.2
1,113,665 - -0.1
1,113,703 - mdtG b1053 0.18 +0.9
1,113,816 + mdtG b1053 0.27 +0.1
1,113,893 - mdtG b1053 0.33 -0.1
1,113,915 + mdtG b1053 0.35 +0.2
1,113,915 + mdtG b1053 0.35 +0.1
1,114,083 - mdtG b1053 0.49 -0.3
1,114,083 - mdtG b1053 0.49 +1.3
1,114,104 + mdtG b1053 0.50 -0.0
1,114,136 + mdtG b1053 0.53 +0.7
1,114,136 + mdtG b1053 0.53 -0.4
1,114,274 + mdtG b1053 0.64 +0.4

Or see this region's nucleotide sequence