| Condition | Gene | Description | Fitness | Cons. |
|---|
| D-Glucose | PP_0753 | putative Lipoprotein | -1.5 | |
| D-Glucose | PP_1185 | Outer membrane protein H1 | -2.6 | |
| D-Glucose | PP_1460 | putative Membrane protein | -1.5 | |
| D-Glucose | PP_1752 | conserved protein of unknown function | -1.7 | |
| D-Glucose | PP_1998 | putative cell division protein | +1.1 | |
| D-Glucose | PP_2080 | NAD-specific glutamate dehydrogenase | -1.1 | |
| D-Glucose | PP_2932 | Amidase family protein | -1.4 | |
| D-Glucose | PP_4286 | allantoinase | -1.3 | |
| D-Glucose | PP_4779 | AMP nucleosidase | -2.9 | |
| D-Glucose | PP_4819 | conserved protein of unknown function | -1.5 | |
| D-Glucose | PP_5077 | conserved protein of unknown function | -2.7 | |
| D-Glucose | PP_5320 | two-component system DNA-binding transcriptional dual response regulator PhoB | -2.4 | |
| D-Glucose | PP_5321 | two-component system sensory histidine kinase | -2.1 | |
| Supernatant; Brevundimonas sp. 374 spent media | PP_4503 | DNA-binding response regulator | -1.4 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0111 | Electron transport protein SCO1/SenC | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0118 | zinc import ATP-binding protein | -1.7 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0154 | Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) | -1.8 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0188 | putative Uroporphyrin-III C-methyltransferase | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0189 | putative heme biosynthesis protein | -1.6 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0247 | Osmolarity sensor protein EnvZ | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0351 | putative Transmembrane sensor protein | +5.4 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0482 | bacterioferritin | -2.1 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0704 | RNA polymerase sigma-70 factor, ECF subfamily | -3.3 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0707 | putative membrane protein | -1.5 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0902 | integral membrane sensor signal transduction histidine kinase | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0904 | InaA protein | +1.7 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0908 | conserved exported protein of unknown function | -2.6 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0909 | conserved exported protein of unknown function | -2.2 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0943 | conserved protein of unknown function | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_0998 | conserved protein of unknown function | -1.7 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1006 | putative outer membrane heme receptor | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1008 | RNA polymerase subunit sigma-24 | variable | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1034 | multicopper oxidase | -2.5 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1058 | conserved protein of unknown function | +1.7 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1078 | putative ABC transporter, ATP-binding protein | -2.8 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1082 | bacterioferritin | -2.9 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1083 | (2Fe-2S)-binding protein | -3.0 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1185 | Outer membrane protein H1 | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1201 | conserved exported protein of unknown function | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1202 | putative enzyme involved in modification of phospholipids | variable | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1238 | putative Lipoprotein | -2.5 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1262 | LysR family transcriptional regulator | -2.1 | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1295 | ATP-dependent RNA helicase RhlB | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1427 | RNA polymerase sigma E factor | +1.8 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1429 | Sigma factor AlgU regulatory protein MucB | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1451 | conserved exported protein of unknown function | -2.3 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1460 | putative Membrane protein | -3.1 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1587 | NhaP-type Na+/H+ and K+/H+ antiporters | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1646 | putative Thioredoxin | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1666 | conserved exported protein of unknown function | +1.6 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1695 | putative Sodium-solute symporter/sensory box histidine kinase/response regulator | -3.4 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1737 | conserved protein of unknown function | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1738 | conserved exported protein of unknown function | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1832 | putative Oxidase | -1.6 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1843 | Mg2+/Co2+ transporter | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1871 | Protease HtpX | -2.2 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_1918 | septation protein | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_2005 | conserved exported protein of unknown function | -1.7 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_2098 | D-alanyl-D-alanine carboxypeptidase | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_2148 | transcription-repair coupling factor | -1.8 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_2449 | conserved protein of unknown function | -2.5 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_2900 | conserved protein of unknown function | +2.6 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_3300 | Transcriptional regulator, tetR family | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_3428 | conserved protein of unknown function containing tetratricopeptide repeat domain | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_3453 | putative Sensor protein RstB | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_3794 | periplasmic murein D-alanyl-D-alanine endopeptidase | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4147 | microcin C transporter - periplasmic binding protein | variable | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4148 | putative inner membrane ABC transporter permease protein | variable | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4149 | putative inner membrane ABC transporter permease protein | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4150 | microcin C transporter - ATP binding subunit | -2.4 | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4264 | oxygen-independent coproporphyrinogen III dehydrogenase | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4478 | N-succinylglutamate 5-semialdehyde dehydrogenase | -1.4 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4570 | conserved protein of unknown function | +1.9 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4592 | putative metal dependent hydrolase | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4609 | conserved membrane protein of unknown function | -2.9 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4610 | conserved protein of unknown function containing PepSY-associated TM helix domain | -3.1 | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4755 | Outer membrane ferrichrome-iron receptor | -3.8 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4805 | membrane-bound lytic murein transglycosylase B | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4838 | Outer membrane copper receptor OprC | -1.1 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4868 | Nicotinate phosphoribosyltransferase | variable | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4881 | putative Iron ABC transporter, periplasmic iron-binding protein | -2.1 | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4882 | Iron ABC transporter, permease protein | -2.5 | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_4980 | ATP-dependent RNA helicase | -1.9 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_5025 | Glucans biosynthesis glucosyltransferase H | -2.4 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_5026 | Glucans biosynthesis protein G | -2.9 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_5092 | putative exported NLP/P60 protein | variable | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_5218 | DedA family protein | -4.8 | |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_5365 | putative fatty acid methyltransferase | -1.9 | Yes |
| Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered | PP_5699 | putative iron uptake protein | -2.0 | |
| Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered | PP_0704 | RNA polymerase sigma-70 factor, ECF subfamily | -1.8 | |
| Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered | PP_1202 | putative enzyme involved in modification of phospholipids | -1.5 | Yes |
| Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered | PP_3426 | Multidrug efflux RND transporter MexF | -1.8 | |
| Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered | PP_4755 | Outer membrane ferrichrome-iron receptor | -1.8 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | PP_0704 | RNA polymerase sigma-70 factor, ECF subfamily | -2.0 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | PP_0998 | conserved protein of unknown function | -1.6 | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | PP_1201 | conserved exported protein of unknown function | variable | |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | PP_1202 | putative enzyme involved in modification of phospholipids | variable | Yes |
| Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered | PP_4755 | Outer membrane ferrichrome-iron receptor | -1.5 | |