Specific Phenotypes for Pseudomonas putida KT2440 in stress experiments

Condition Gene Description Fitness Cons.
1-Pentanol PP_0753 putative Lipoprotein -1.6  
1-Pentanol PP_1728 conserved membrane protein of unknown function +3.7  
1-Pentanol PP_2223 conserved protein of unknown function +1.8  
1-Pentanol PP_3024 conserved protein of unknown function +2.2  
1-Pentanol PP_4331 conserved protein of unknown function +1.7  
1-Pentanol PP_5109 membrane component of the ABC transporter FtsEX involved in cellular division -1.6  
1-Pentanol PP_5551 conserved protein of unknown function +2.1  
2-Ethylhexanol PP_0599 paraquat-inducible protein B -1.1  
2-Ethylhexanol PP_1078 putative ABC transporter, ATP-binding protein -1.4  
2-Ethylhexanol PP_1728 conserved membrane protein of unknown function -1.5  
2-Ethylhexanol PP_3453 putative Sensor protein RstB -1.4  
2-Ethylhexanol PP_3456 Multidrug resistance protein MexB +1.0  
2-Piperidinone PP_4236 putative Thiol:disulfide interchange protein dsbE -1.3  
3-methyl-1-butanol PP_1695 putative Sodium-solute symporter/sensory box histidine kinase/response regulator -1.1  
3-methyl-1-butanol PP_1728 conserved membrane protein of unknown function +4.6  
3-methyl-1-butanol PP_2222 conserved protein of unknown function +1.6  
3-methyl-1-butanol PP_2223 conserved protein of unknown function +2.2  
3-methyl-1-butanol PP_2884 XRE family transcriptional regulator -1.8  
3-methyl-1-butanol PP_3024 conserved protein of unknown function +2.6  
3-methyl-1-butanol PP_3627 conserved protein of unknown function +1.9  
3-methyl-1-butanol PP_3957 choline/carnitine/betaine transporter BetTC +1.4  
3-methyl-1-butanol PP_4331 conserved protein of unknown function +2.0  
3-methyl-1-butanol PP_4333 CheW domain protein +1.7  
3-methyl-1-butanol PP_4334 ParA family protein +1.4  
3-methyl-1-butanol PP_4371 two component system AtoC DNA-binding transcriptional activator +1.2  
3-methyl-1-butanol PP_4477 N-succinylarginine dihydrolase +1.8  
3-methyl-1-butanol PP_5551 conserved protein of unknown function +2.8  
3-methyl-3-butenol (commercial) PP_1616 formaldehyde dehydrogenase, glutathione-dependent -1.2  
3-methyl-3-butenol (commercial) PP_1728 conserved membrane protein of unknown function +2.0  
3-methyl-3-butenol (commercial) PP_4236 putative Thiol:disulfide interchange protein dsbE -1.7  
3-methyl-3-butenol (pure) PP_1728 conserved membrane protein of unknown function +3.7  
3-methyl-3-butenol (pure) PP_4236 putative Thiol:disulfide interchange protein dsbE -1.6  
3-methyl-3-butenol (pure) PP_4477 N-succinylarginine dihydrolase +1.6  
Butanol PP_0058 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase +1.4  
Butanol PP_1728 conserved membrane protein of unknown function +4.5  
Butanol PP_2304 putative Peptidyl-prolyl cis-trans isomerase D -1.9  
Carbenicillin disodium salt PP_1445 carbohydrate-selective porin +1.4  
Carbenicillin disodium salt PP_2130 putative Soluble lytic transglycosylase -1.3 Yes
Chloramphenicol PP_1387 Probable HTH-type transcriptional regulator TtgR +1.9 Yes
Chloramphenicol PP_1827 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase -2.0 Yes
Chloramphenicol PP_3454 putative transcriptional regulatory protein -1.4  
Chloramphenicol PP_3455 Multidrug efflux RND membrane fusion protein +1.8  
Chloramphenicol PP_3456 Multidrug resistance protein MexB +1.9  
Chloramphenicol PP_4896 DNA mismatch repair protein MutL -1.2  
Cholinium dihydrogen phosphate PP_1078 putative ABC transporter, ATP-binding protein -1.4  
Cholinium dihydrogen phosphate PP_4881 putative Iron ABC transporter, periplasmic iron-binding protein -1.2  
Cholinium dihydrogen phosphate PP_4882 Iron ABC transporter, permease protein -1.2  
Cholinium lysinate PP_1616 formaldehyde dehydrogenase, glutathione-dependent -1.4  
D-Glucose PP_0137 glutamate/aspartate-proton DAACS transporter +2.1  
D-Glucose PP_1066 C4-dicarboxylate transport transcriptional regulatory protein +1.9  
D-Glucose PP_1067 Sensor histidine kinase +2.0  
D-Glucose PP_1444 quinoprotein glucose dehydrogenase -2.8  
D-Glucose PP_1467 NhaP-type Na+(K+)/H+ antiporter -1.3  
D-Glucose PP_1505 Phosphoenolpyruvate carboxylase -1.0  
D-Glucose PP_2052 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase -2.7  
D-Glucose PP_3415 Transcriptional regulator, LacI family +2.0 Yes
D-Glucose PP_4304 Cation transporter, VIC family -1.7 Yes
D-Glucose PP_4333 CheW domain protein -1.4  
D-Glucose PP_4363 Sensor histidine kinase/response regulator variable  
D-Glucose PP_4946 sodium/L-proline transporter +1.4  
D-Glucose PP_5236 conserved protein of unknown function -1.6  
D-Glucose PP_5321 two-component system sensory histidine kinase -1.4  
Formaldehyde PP_0672 Sensory box protein -1.3  
Formaldehyde PP_1125 putative Helicase -1.4  
Formaldehyde PP_1615 Transcriptional regulator, LysR family -2.7  
Formaldehyde PP_1616 formaldehyde dehydrogenase, glutathione-dependent -4.4  
Formaldehyde PP_1617 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase -2.6  
Formaldehyde PP_4002 DNA-dependent ATPase required for recombination -3.9  
Formaldehyde PP_4639 P-loop guanosine triphosphatase-dependent zinc chaperone -1.2  
Fusaric acid PP_0111 Electron transport protein SCO1/SenC variable  
Fusaric acid PP_0130 1,6-anhydro-N-acetylmuramyl-L-alanine amidase -1.6  
Fusaric acid PP_0180 putative cytochrome c family protein -2.7  
Fusaric acid PP_0282 L-arginine ABC transporter - periplasmic binding subunit variable Yes
Fusaric acid PP_0429 Oxidoreductase, short chain dehydrogenase/reductase family +1.5  
Fusaric acid PP_0908 conserved exported protein of unknown function -2.9  
Fusaric acid PP_0909 conserved exported protein of unknown function -3.5  
Fusaric acid PP_1034 multicopper oxidase -2.8  
Fusaric acid PP_1058 conserved protein of unknown function variable  
Fusaric acid PP_1078 putative ABC transporter, ATP-binding protein variable  
Fusaric acid PP_1150 putative Membrane protein -6.9  
Fusaric acid PP_1151 conserved protein of unknown function -5.9  
Fusaric acid PP_1152 putative membrane fusion efflux protein -6.2  
Fusaric acid PP_1238 putative Lipoprotein -1.4  
Fusaric acid PP_1273 putative Multidrug efflux MFS outer membrane protein -1.3  
Fusaric acid PP_1444 quinoprotein glucose dehydrogenase -1.4  
Fusaric acid PP_1737 conserved protein of unknown function -2.4 Yes
Fusaric acid PP_1738 conserved exported protein of unknown function -2.1 Yes
Fusaric acid PP_1943 formyltetrahydrofolate deformylase variable  
Fusaric acid PP_2130 putative Soluble lytic transglycosylase variable  
Fusaric acid PP_2304 putative Peptidyl-prolyl cis-trans isomerase D variable  
Fusaric acid PP_3300 Transcriptional regulator, tetR family variable  
Fusaric acid PP_3330 putative Outer membrane ferric siderophore receptor -1.6  
Fusaric acid PP_3428 conserved protein of unknown function containing tetratricopeptide repeat domain variable  
Fusaric acid PP_4264 oxygen-independent coproporphyrinogen III dehydrogenase -2.2  
Fusaric acid PP_4514 putative esterase of the alpha-beta hydrolase superfamily -2.1 Yes
Fusaric acid PP_4570 conserved protein of unknown function variable Yes
Fusaric acid PP_4610 conserved protein of unknown function containing PepSY-associated TM helix domain variable  
Fusaric acid PP_4860 putative Mannose-6-phosphate isomerase -4.2 Yes
Fusaric acid PP_4881 putative Iron ABC transporter, periplasmic iron-binding protein variable  
Fusaric acid PP_4882 Iron ABC transporter, permease protein variable  
Fusaric acid PP_4923 Outer membrane efflux protein -1.6  
Geraniol PP_0111 Electron transport protein SCO1/SenC -1.6  
Geraniol PP_0173 putative transcriptional factor-related protein -1.9  
Geraniol PP_0174 conserved protein of unknown function -1.8  
Geraniol PP_0337 Sensory box protein +1.6  
Geraniol PP_0599 paraquat-inducible protein B -1.1  
Geraniol PP_0672 Sensory box protein -1.4  
Geraniol PP_1087 Outer membrane protein, OmpA family +1.9  
Geraniol PP_1422 conserved protein of unknown function +1.3  
Geraniol PP_1474 conserved exported protein of unknown function +1.2  
Geraniol PP_1488 Methyl-accepting chemotaxis transducer -1.6  
Geraniol PP_1490 Probable biofilm formation methyltransferase WspC -2.3  
Geraniol PP_1494 Response regulator/GGDEF domain protein -2.1  
Geraniol PP_1841 Cytochrome c family protein +1.4  
Geraniol PP_2372 putative Periplasmic sugar-binding protein -1.1  
Geraniol PP_2413 GGDEF family protein -1.5  
Geraniol PP_3451 conserved exported protein of unknown function +2.3  
Geraniol PP_3453 putative Sensor protein RstB -1.8  
Geraniol PP_4250 cytochrome c oxidase subunit I, cbb3-type -1.9  
Geraniol PP_4260 conserved protein of unknown function -1.5  
Geraniol PP_4331 conserved protein of unknown function +3.0  
Geraniol PP_4333 CheW domain protein +1.7  
Geraniol PP_4334 ParA family protein +1.6  
Geraniol PP_4335 flagellar motor protein +1.5  
Geraniol PP_4336 flagellar motor rotation protein +2.0  
Geraniol PP_4371 two component system AtoC DNA-binding transcriptional activator +2.4  
Geraniol PP_4670 diguanylate cyclase -1.0  
Geraniol PP_4781 Sensor histidine kinase -1.2  
Geraniol PP_4979 putative Periplasmic binding protein +1.4  
Geraniol PP_4980 ATP-dependent RNA helicase +1.4  
Geraniol PP_5212 Oxidoreductase, iron-sulfur-binding +1.6  
Isobutyl alcohol PP_1728 conserved membrane protein of unknown function +2.2  
Lithium chloride PP_1145 RNA polymerase-associated protein RapA -1.1  
Lithium chloride PP_4507 potassium transporter -1.6  
PHB-HV-HH PP_1445 carbohydrate-selective porin +1.4  
Polymyxin B sulfate PP_0903 conserved protein of unknown function +5.1  
Polymyxin B sulfate PP_0904 InaA protein +2.7  
Polymyxin B sulfate PP_1738 conserved exported protein of unknown function +1.1  
Polymyxin B sulfate PP_4592 putative metal dependent hydrolase -1.0 Yes
Sodium Chloride PP_0612 FAD-dependent glycine/D-amino acid oxidase variable  
Sodium Chloride PP_3957 choline/carnitine/betaine transporter BetTC variable Yes
Sodium Chloride PP_4363 Sensor histidine kinase/response regulator -2.0  
Sodium Fluoroacetate PP_0154 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) +2.0  
Sodium Fluoroacetate PP_0353 Exonuclease -4.6  
Sodium Fluoroacetate PP_0354 CBS domain protein -6.0  
Sodium Fluoroacetate PP_0380 Coenzyme PQQ synthesis protein A -2.0  
Sodium Fluoroacetate PP_0793 Phosphotransferase system, fructose-specific EI/HPr/EIIA components -1.2  
Sodium Fluoroacetate PP_0795 fructose PTS permease - IIBC component -1.1  
Sodium Fluoroacetate PP_1013 Sensor histidine kinase -2.2  
Sodium Fluoroacetate PP_1014 aldose-ketose isomerase -1.2  
Sodium Fluoroacetate PP_1015 mannose/glucose ABC transporter, glucose-binding periplasmic protein -2.2  
Sodium Fluoroacetate PP_1016 mannose/glucose ABC transporter, permease protein -2.2  
Sodium Fluoroacetate PP_1017 mannose/glucose ABC transporter, permease protein -2.4  
Sodium Fluoroacetate PP_1018 mannose/glucose ABC transporter - ATP binding subunit -1.7  
Sodium Fluoroacetate PP_1419 tricarboxylate-specific outer membrane porin +2.3  
Sodium Fluoroacetate PP_1444 quinoprotein glucose dehydrogenase -4.0  
Sodium Fluoroacetate PP_1445 carbohydrate-selective porin +3.2  
Sodium Fluoroacetate PP_1635 DNA-binding response regulator +3.9  
Sodium Fluoroacetate PP_1695 putative Sodium-solute symporter/sensory box histidine kinase/response regulator +3.7  
Sodium Fluoroacetate PP_1696 putative Membrane protein +1.4  
Sodium Fluoroacetate PP_2545 trans-aconitate methyltransferase -4.4  
Sodium Fluoroacetate PP_4001 Putative fluoride ion transporter CrcB -5.9  
Sodium Fluoroacetate PP_4487 acetyl-CoA synthetase +1.7  
Sodium Fluoroacetate PP_4776 AsnC family transcriptional regulator -2.8  
Sodium Fluoroacetate PP_4951 Drug resistance transporter, EmrB/QacA family -1.6  
Sodium Fluoroacetate PP_4975 Long-chain acyl-CoA thioester hydrolase family protein -2.1  
pinene PP_0481 Catalase +1.6  
pinene PP_3627 conserved protein of unknown function +1.6