Specific Phenotypes for Pseudomonas putida KT2440 in phage experiments

Condition Gene Description Fitness Cons.
PP_0066 Ribosomal RNA small subunit methyltransferase B variable Yes
PP_0146 putative transport protein variable  
PP_0157 transcriptional activator of gcdH, LysR family variable  
PP_0158 glutaryl-CoA dehydrogenase variable  
PP_0159 putative CoA-transferase family III +1.1  
PP_0160 putative ferrioxamine receptor variable Yes
PP_0161 putative transmembrane sensor variable  
PP_0163 putative transcriptional regulator variable  
PP_0182 conserved protein of unknown function variable  
PP_0190 putative disulfide bond formation protein B variable  
PP_0247 Osmolarity sensor protein EnvZ variable  
PP_0439 conserved protein of unknown function variable  
PP_0440 Elongation factor Tu-A variable  
PP_0503 Major facilitator family transporter variable  
PP_0540 conserved inner membrane protein variable  
PP_0564 conserved protein of unknown function variable  
PP_0624 Uncharacterized protein YfiH variable  
PP_0640 conserved protein of unknown function variable  
PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase +1.5  
PP_0941 putative ribosome associated protein variable  
PP_1190 conserved protein of unknown function variable  
PP_1204 putative Lipoprotein variable  
PP_1226 pre-queuosine 0 synthase variable  
PP_1320 stringent starvation protein A variable Yes
PP_1324 putative endonuclease distantly related to archaeal Holliday junction resolvase variable  
PP_1369 conserved protein of unknown function variable  
PP_1370 Glycosyl transferase, group 1 family protein variable  
PP_1374 conserved protein of unknown function variable  
PP_1441 tRNA (cmo5U34)-methyltransferase variable  
PP_1523 conserved protein of unknown function variable  
PP_1626 DNA mismatch repair protein MutS variable  
PP_1627 conserved protein of unknown function variable  
PP_1775 Metallo-beta-lactamase family protein variable  
PP_1781 putative O-acyltransferase variable  
PP_1786 putative Glycosyl transferase +2.1  
PP_1787 conserved protein of unknown function variable  
PP_1789 Hydrolase, haloacid dehalogenase-like family variable  
PP_1791 putative Aldolase/synthase variable  
PP_1795 conserved protein of unknown function +1.6  
PP_1797 HlyD family secretion protein variable  
PP_1798 Outer membrane efflux protein variable  
PP_1807 2-dehydro-3-deoxyphosphooctonate aldolase variable  
PP_1871 Protease HtpX variable  
PP_1918 septation protein variable  
PP_1940 Methyl-accepting chemotaxis transducer variable  
PP_1942 Transcriptional regulator, LysR family variable  
PP_1944 putative Aminomethyltransferase variable  
PP_1951 Oxidoreductase, short chain dehydrogenase/reductase family variable  
PP_1957 Oxidoreductase, Pdr/VanB family variable  
PP_2005 conserved exported protein of unknown function variable  
PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase variable  
PP_2098 D-alanyl-D-alanine carboxypeptidase variable  
PP_2148 transcription-repair coupling factor variable Yes
PP_2223 conserved protein of unknown function variable  
PP_2319 conserved protein of unknown function variable  
PP_2448 Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) variable  
PP_2462 conserved protein of unknown function variable  
PP_3067 conserved protein of unknown function variable  
PP_3180 Smp-30/Cgr1 family protein variable  
PP_3627 conserved protein of unknown function variable  
PP_3680 conserved protein of unknown function variable  
PP_3681 putative Helicase variable  
PP_3768 putative shikimate 5-dehydrogenase variable  
PP_3957 choline/carnitine/betaine transporter BetTC variable  
PP_3960 Transcriptional regulator, TetR family variable  
PP_3997 putative Glycosyl transferase -2.1  
PP_4198 OmpA family protein variable  
PP_4264 oxygen-independent coproporphyrinogen III dehydrogenase variable Yes
PP_4451 conserved protein of unknown function variable  
PP_4459 transposase variable  
PP_4490 phenylalanine-4-hydroxylase variable  
PP_4495 aromatic amino acid transport protein -1.4  
PP_4570 conserved protein of unknown function variable  
PP_4653 adenine:H+ symporter variable Yes
PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase variable  
PP_4798 putative Membrane-bound lytic murein transglycosylase variable  
PP_4805 membrane-bound lytic murein transglycosylase B variable  
PP_4859 Transcriptional regulator, TetR family variable  
PP_4971 putative Outer membrane-bound lytic murein transglycolase A variable  
PP_4978 conserved protein of unknown function variable  
PP_4980 ATP-dependent RNA helicase variable  
PP_5064 choline dehydrogenase variable  
PP_5101 coproporphyrinogen/heterocyclic compound oxidase (aerobic) variable  
PP_5177 spermidine/putrescine ABC transporter - permease subunit variable  
PP_5178 spermidine/putrescine ABC transporter - inner membrane subunit variable  
PP_5179 spermidine/putrescine ABC transporter - ATP binding subunit variable  
PP_5278 4-guanidinobutyraldehyde dehydrogenase variable  
PP_5283 periplasmic dipeptide transport protein variable  
PP_5439 conserved protein of unknown function variable  
PP_5463 conserved protein of unknown function variable  
PP_5494 protein of unknown function variable  
PP_5553 conserved protein of unknown function variable  
PP_5620 conserved protein of unknown function variable  
PP_5686 protein of unknown function variable  
PP_5742 putative membrane protein of unknown function variable  
PUT 8 MOI 1 PP_0066 Ribosomal RNA small subunit methyltransferase B -5.3  
PUT 8 MOI 1 PP_0540 conserved inner membrane protein -7.9  
PUT 8 MOI 1 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase +1.5  
PUT 8 MOI 1 PP_1627 conserved protein of unknown function -6.3  
PUT 8 MOI 1 PP_1798 Outer membrane efflux protein -2.5  
PUT 8 MOI 1 PP_1918 septation protein -2.2  
PUT 8 MOI 1 PP_3957 choline/carnitine/betaine transporter BetTC +1.1  
PUT 8 MOI 1 PP_4264 oxygen-independent coproporphyrinogen III dehydrogenase -4.6  
PUT 8 MOI 1 PP_5283 periplasmic dipeptide transport protein -3.6  
PUT8 MOI 0.1 PP_0066 Ribosomal RNA small subunit methyltransferase B -4.2  
PUT8 MOI 0.1 PP_0540 conserved inner membrane protein -8.0  
PUT8 MOI 0.1 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase +1.7  
PUT8 MOI 0.1 PP_0757 conserved protein of unknown function +1.4  
PUT8 MOI 0.1 PP_0761 Ribosomal RNA small subunit methyltransferase C +1.2  
PUT8 MOI 0.1 PP_1204 putative Lipoprotein -4.3  
PUT8 MOI 0.1 PP_1320 stringent starvation protein A +1.1  
PUT8 MOI 0.1 PP_1626 DNA mismatch repair protein MutS -1.8  
PUT8 MOI 0.1 PP_1627 conserved protein of unknown function -7.6  
PUT8 MOI 0.1 PP_1786 putative Glycosyl transferase +1.3  
PUT8 MOI 0.1 PP_1787 conserved protein of unknown function +1.8  
PUT8 MOI 0.1 PP_1789 Hydrolase, haloacid dehalogenase-like family -4.9  
PUT8 MOI 0.1 PP_1798 Outer membrane efflux protein -2.9  
PUT8 MOI 0.1 PP_1807 2-dehydro-3-deoxyphosphooctonate aldolase -2.4  
PUT8 MOI 0.1 PP_1871 Protease HtpX -2.9  
PUT8 MOI 0.1 PP_1918 septation protein -2.6  
PUT8 MOI 0.1 PP_2081 putative phosphoenolpyruvate synthase regulatory protein +1.5  
PUT8 MOI 0.1 PP_2148 transcription-repair coupling factor -6.7  
PUT8 MOI 0.1 PP_2223 conserved protein of unknown function +1.2  
PUT8 MOI 0.1 PP_3627 conserved protein of unknown function -8.8  
PUT8 MOI 0.1 PP_3768 putative shikimate 5-dehydrogenase -1.5  
PUT8 MOI 0.1 PP_3957 choline/carnitine/betaine transporter BetTC +1.2  
PUT8 MOI 0.1 PP_4264 oxygen-independent coproporphyrinogen III dehydrogenase -2.5  
PUT8 MOI 0.1 PP_4570 conserved protein of unknown function -1.4  
PUT8 MOI 0.1 PP_4798 putative Membrane-bound lytic murein transglycosylase -1.5  
PUT8 MOI 0.1 PP_4805 membrane-bound lytic murein transglycosylase B -2.2  
PUT8 MOI 0.1 PP_4813 PAP2 family protein/DedA family protein -1.7  
PUT8 MOI 0.1 PP_4859 Transcriptional regulator, TetR family +1.6  
PUT8 MOI 0.1 PP_4971 putative Outer membrane-bound lytic murein transglycolase A -1.7  
PUT8 MOI 0.1 PP_5283 periplasmic dipeptide transport protein -4.0  
PUT8 MOI 10 PP_0066 Ribosomal RNA small subunit methyltransferase B -2.7  
PUT8 MOI 10 PP_0540 conserved inner membrane protein -8.1  
PUT8 MOI 10 PP_0598 paraquat-inducible protein A -1.3  
PUT8 MOI 10 PP_0599 paraquat-inducible protein B -1.0  
PUT8 MOI 10 PP_1626 DNA mismatch repair protein MutS -1.4  
PUT8 MOI 10 PP_1627 conserved protein of unknown function -3.8  
PUT8 MOI 10 PP_1798 Outer membrane efflux protein -1.6  
PUT8 MOI 10 PP_2148 transcription-repair coupling factor -4.8  
PUT8 MOI 10 PP_2611 membrane protein of unknown function +1.4  
PUT8 MOI 10 PP_3627 conserved protein of unknown function -9.2  
PUT8 MOI 10 PP_4264 oxygen-independent coproporphyrinogen III dehydrogenase -2.5  
PUT8 MOI 10 PP_4896 DNA mismatch repair protein MutL -1.2  
PUT8 MOI 10 PP_5283 periplasmic dipeptide transport protein -4.2  
PUT8 MOI 10 PP_5569 protein of unknown function of phage origin +1.7