Specific Phenotypes for Escherichia coli ECOR27 in phage experiments

Condition Gene Description Fitness Cons.
MOI 10 NOLOHH_00610 Outer membrane porin protein LC variable Yes
MOI 10 NOLOHH_02065 esterase FrsA variable  
MOI 10 NOLOHH_02330 murein transglycosylase D -1.2  
MOI 10 NOLOHH_02340 endonuclease/exonuclease/phosphatase family protein variable  
MOI 10 NOLOHH_03505 energy-dependent translational throttle protein EttA variable  
MOI 10 NOLOHH_04715 protein-disulfide reductase DsbD +1.7  
MOI 10 NOLOHH_05205 zinc uptake transcriptional repressor Zur -1.5  
MOI 10 NOLOHH_05680 tRNA (uridine(54)-C5)-methyltransferase TrmA -1.1  
MOI 10 NOLOHH_05690 HTH-type transcriptional repressor FabR variable  
MOI 10 NOLOHH_06660 lipopolysaccharide N-acetylmannosaminouronosyltransferase variable  
MOI 10 NOLOHH_06670 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase variable  
MOI 10 NOLOHH_06680 dTDP-4-amino-4,6-dideoxygalactose transaminase variable  
MOI 10 NOLOHH_06700 UDP-N-acetyl-D-mannosamine dehydrogenase variable Yes
MOI 10 NOLOHH_06710 ECA polysaccharide chain length modulation protein variable Yes
MOI 10 NOLOHH_08825 two-component system response regulator OmpR +7.0 Yes
MOI 10 NOLOHH_08830 two-component system sensor histidine kinase EnvZ +7.1 Yes
MOI 10 NOLOHH_09775 phospholipid ABC transporter ATP-binding protein MlaF -1.7 Yes
MOI 10 NOLOHH_09780 lipid asymmetry maintenance ABC transporter permease subunit MlaE -2.3 Yes
MOI 10 NOLOHH_10275 EnvZ/OmpR regulon moderator MzrA +3.1  
MOI 10 NOLOHH_11125 pyridoxal phosphate homeostasis protein -1.8  
MOI 10 NOLOHH_11485 Inner membrane protein YgfX variable  
MOI 10 NOLOHH_12005 UPF0382 inner membrane protein YgdD +1.8  
MOI 10 NOLOHH_12055 L-serine ammonia-lyase II variable Yes
MOI 10 NOLOHH_13160 two component system sensor histidine kinase QseE/GlrK variable  
MOI 10 NOLOHH_13165 two-component system QseEF-associated lipoprotein QseG -2.2 Yes
MOI 10 NOLOHH_13170 two-component system response regulator QseF/GlrR variable Yes
MOI 10 NOLOHH_14745 two-component system sensor histidine kinase RcsC variable Yes
MOI 10 NOLOHH_14765 phosphotransferase RcsD variable Yes
MOI 10 NOLOHH_14775 porin OmpC variable  
MOI 10 NOLOHH_15265 Uncharacterized protein YehL +1.5  
MOI 10 NOLOHH_21010 TetR family copper-responsive transcriptional repressor ComR +4.2 Yes
MOI 10 NOLOHH_22740 Putative gluconeogenesis factor variable Yes
MOI 10 NOLOHH_22750 excinuclease ABC subunit UvrB variable  
MOI 10 NOLOHH_23490 esterase +1.2  
MOI 10 NOLOHH_23605 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB variable  
Phage NOLOHH_00640 NINE Protein variable Yes
Phage NOLOHH_01100 adenine phosphoribosyltransferase variable  
Phage NOLOHH_01135 multidrug efflux RND transporter periplasmic adaptor subunit AcrA variable Yes
Phage NOLOHH_01140 efflux RND transporter permease AcrB variable Yes
Phage NOLOHH_01150 Hha toxicity modulator TomB variable  
Phage NOLOHH_01250 DNA-binding protein HU-beta variable  
Phage NOLOHH_01295 cytochrome o ubiquinol oxidase subunit II variable Yes
Phage NOLOHH_01300 cytochrome o ubiquinol oxidase subunit I variable Yes
Phage NOLOHH_01305 cytochrome o ubiquinol oxidase subunit III variable  
Phage NOLOHH_01310 cytochrome o ubiquinol oxidase subunit III variable  
Phage NOLOHH_01415 nucleoside-specific channel-forming protein Tsx variable Yes
Phage NOLOHH_01445 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA variable Yes
Phage NOLOHH_01500 recombination-associated protein RdgC variable Yes
Phage NOLOHH_02075 cytosol nonspecific dipeptidase variable Yes
Phage NOLOHH_02135 peptidoglycan meso-diaminopimelic acid protein amidase variable Yes
Phage NOLOHH_02330 murein transglycosylase D variable  
Phage NOLOHH_02340 endonuclease/exonuclease/phosphatase family protein variable Yes
Phage NOLOHH_02405 methionine ABC transporter substrate-binding lipoprotein MetQ variable Yes
Phage NOLOHH_02805 YacC family pilotin-like protein variable Yes
Phage NOLOHH_02855 pyruvate dehydrogenase complex transcriptional repressor PdhR variable  
Phage NOLOHH_02910 cell division protein ZapD variable  
Phage NOLOHH_03355 transcriptional activator NhaR variable  
Phage NOLOHH_03505 energy-dependent translational throttle protein EttA variable Yes
Phage NOLOHH_03545 purine-nucleoside phosphorylase variable  
Phage NOLOHH_03565 deoxyribose-phosphate aldolase variable Yes
Phage NOLOHH_03990 restriction endonuclease variable  
Phage NOLOHH_04055 leucyl aminopeptidase variable  
Phage NOLOHH_04480 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB variable  
Phage NOLOHH_04485 ribonuclease R variable  
Phage NOLOHH_04715 protein-disulfide reductase DsbD variable Yes
Phage NOLOHH_05290 maltose ABC transporter permease MalF variable Yes
Phage NOLOHH_05690 HTH-type transcriptional repressor FabR variable  
Phage NOLOHH_05870 DNA-binding transcriptional regulator CytR variable Yes
Phage NOLOHH_05910 glycerol kinase GlpK variable Yes
Phage NOLOHH_05940 Uncharacterized protein YiiQ variable  
Phage NOLOHH_05980 envelope stress response regulator transcription factor CpxR variable  
Phage NOLOHH_05985 envelope stress sensor histidine kinase CpxA variable Yes
Phage NOLOHH_06235 nitrogen regulation protein NR(II) variable Yes
Phage NOLOHH_06360 Trk system potassium transporter TrkH variable  
Phage NOLOHH_06495 phospholipase A variable Yes
Phage NOLOHH_06605 uroporphyrinogen-III C-methyltransferase variable  
Phage NOLOHH_06610 protoheme IX biogenesis protein HemY variable Yes
Phage NOLOHH_06660 lipopolysaccharide N-acetylmannosaminouronosyltransferase variable  
Phage NOLOHH_06670 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase variable  
Phage NOLOHH_06680 dTDP-4-amino-4,6-dideoxygalactose transaminase variable  
Phage NOLOHH_06700 UDP-N-acetyl-D-mannosamine dehydrogenase variable  
Phage NOLOHH_06710 ECA polysaccharide chain length modulation protein variable Yes
Phage NOLOHH_06740 guanosine-5'-triphosphate,3'-diphosphate diphosphatase variable  
Phage NOLOHH_06925 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG variable Yes
Phage NOLOHH_07425 ATP-dependent DNA helicase RecG variable  
Phage NOLOHH_07465 UPF0701 protein YicC variable Yes
Phage NOLOHH_07685 mannitol operon repressor MtlR variable Yes
Phage NOLOHH_07695 PTS mannitol transporter subunit IICBA variable Yes
Phage NOLOHH_08110 cellulose biosynthesis protein BcsG variable Yes
Phage NOLOHH_08115 cellulose biosynthesis protein BcsF variable  
Phage NOLOHH_08120 cellulose biosynthesis protein BcsE variable Yes
Phage NOLOHH_08125 cellulose biosynthesis protein BcsR variable Yes
Phage NOLOHH_08130 cellulose biosynthesis protein BcsQ variable Yes
Phage NOLOHH_08135 UDP-forming cellulose synthase catalytic subunit variable Yes
Phage NOLOHH_08140 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB variable Yes
Phage NOLOHH_08150 cellulose synthase complex outer membrane protein BcsC variable Yes
Phage NOLOHH_08155 biofilm formation regulator HmsP variable Yes
Phage NOLOHH_08220 acid resistance transcriptional activator GadX variable  
Phage NOLOHH_08260 acid resistance transcriptional activator GadE variable  
Phage NOLOHH_08285 HTH-type transcriptional regulator DctR variable  
Phage NOLOHH_08480 Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA variable  
Phage NOLOHH_08500 16S rRNA (guanine(966)-N(2))-methyltransferase variable  
Phage NOLOHH_08735 DeoR/GlpR family transcriptional regulator variable  
Phage NOLOHH_08805 Fe(2+) transporter permease subunit FeoB variable Yes
Phage NOLOHH_08825 two-component system response regulator OmpR variable Yes
Phage NOLOHH_08830 two-component system sensor histidine kinase EnvZ variable Yes
Phage NOLOHH_08845 Hsp33 family molecular chaperone HslO variable  
Phage NOLOHH_08910 cell division protein DamX variable  
Phage NOLOHH_09065 ABC transporter ATP-binding protein variable  
Phage NOLOHH_09505 RNase E specificity factor CsrD variable Yes
Phage NOLOHH_09530 ribonuclease G variable Yes
Phage NOLOHH_09775 phospholipid ABC transporter ATP-binding protein MlaF variable Yes
Phage NOLOHH_09780 lipid asymmetry maintenance ABC transporter permease subunit MlaE variable Yes
Phage NOLOHH_09785 outer membrane lipid asymmetry maintenance protein MlaD variable Yes
Phage NOLOHH_09945 lipoprotein NlpI variable  
Phage NOLOHH_10030 penicillin-binding protein activator LpoA variable  
Phage NOLOHH_10275 EnvZ/OmpR regulon moderator MzrA variable Yes
Phage NOLOHH_10495 undecaprenyl-diphosphate phosphatase variable Yes
Phage NOLOHH_10625 3',5'-cyclic-AMP phosphodiesterase variable  
Phage NOLOHH_10745 TonB system transport protein ExbD variable  
Phage NOLOHH_10955 lipoprotein metalloprotease SslE variable  
Phage NOLOHH_10960 prepilin peptidase PppA variable  
Phage NOLOHH_10965 Pilotin AspS 2 variable  
Phage NOLOHH_10970 type II secretion system protein GspC variable  
Phage NOLOHH_10975 general secretion pathway protein D variable  
Phage NOLOHH_10980 general secretion pathway protein E variable  
Phage NOLOHH_10985 general secretion pathway protein F variable  
Phage NOLOHH_10990 general secretion pathway protein G variable  
Phage NOLOHH_10995 general secretion pathway protein H variable  
Phage NOLOHH_11000 general secretion pathway protein I variable  
Phage NOLOHH_11005 general secretion pathway protein J variable  
Phage NOLOHH_11015 general secretion pathway protein L variable  
Phage NOLOHH_11020 GspM family type II secretion system protein YghD variable  
Phage NOLOHH_11125 pyridoxal phosphate homeostasis protein variable Yes
Phage NOLOHH_11295 erythrose-4-phosphate dehydrogenase variable  
Phage NOLOHH_11355 DNA-binding transcriptional regulator ArgP variable Yes
Phage NOLOHH_11395 5-formyltetrahydrofolate cyclo-ligase variable  
Phage NOLOHH_11410 UPF0149 family protein YgfB -1.6  
Phage NOLOHH_11485 Inner membrane protein YgfX variable Yes
Phage NOLOHH_11795 Inner membrane transport protein YqeG variable  
Phage NOLOHH_12005 UPF0382 inner membrane protein YgdD variable Yes
Phage NOLOHH_12055 L-serine ammonia-lyase II variable Yes
Phage NOLOHH_12060 HAAAP family serine/threonine permease SdaC variable Yes
Phage NOLOHH_12115 two-component sensor histidine kinase BarA variable Yes
Phage NOLOHH_12270 DUF3561 domain-containing protein variable Yes
Phage NOLOHH_12505 glucitol operon DNA-binding transcriptional repressor SrlR variable  
Phage NOLOHH_12650 glycine betaine/L-proline ABC transporter substrate-binding protein ProX variable Yes
Phage NOLOHH_12655 glycine betaine/L-proline ABC transporter permease ProW variable Yes
Phage NOLOHH_12660 glycine betaine/L-proline ABC transporter ATP-binding protein ProV variable  
Phage NOLOHH_12710 putative HTH-type transcriptional regulator YgaV variable  
Phage NOLOHH_12810 outer membrane protein assembly factor BamE variable  
Phage NOLOHH_13060 sigma-E factor regulatory protein RseB variable  
Phage NOLOHH_13160 two component system sensor histidine kinase QseE/GlrK variable Yes
Phage NOLOHH_13165 two-component system QseEF-associated lipoprotein QseG variable Yes
Phage NOLOHH_13170 two-component system response regulator QseF/GlrR variable Yes
Phage NOLOHH_13445 exopolyphosphatase variable  
Phage NOLOHH_13570 glycine cleavage system transcriptional repressor variable Yes
Phage NOLOHH_13980 putative cyclic di-GMP phosphodiesterase PdeA variable  
Phage NOLOHH_13985 nucleoside permease NupC variable Yes
Phage NOLOHH_14170 phospholipid-binding lipoprotein MlaA variable  
Phage NOLOHH_14245 50S ribosomal protein L3 N(5)-glutamine methyltransferase variable  
Phage NOLOHH_14270 Uncharacterized protein YfcL variable Yes
Phage NOLOHH_14445 alanine transaminase AlaA variable  
Phage NOLOHH_14600 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase variable Yes
Phage NOLOHH_14605 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase variable  
Phage NOLOHH_14725 DUF1175 domain-containing protein variable  
Phage NOLOHH_14745 two-component system sensor histidine kinase RcsC variable Yes
Phage NOLOHH_14765 phosphotransferase RcsD variable  
Phage NOLOHH_14775 porin OmpC variable  
Phage NOLOHH_14835 ferredoxin-type protein NapG variable  
Phage NOLOHH_14920 nucleoid-associated protein YejK variable  
Phage NOLOHH_14975 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase variable  
Phage NOLOHH_15010 fused PTS fructose transporter subunit IIA/HPr protein variable  
Phage NOLOHH_15135 outer membrane permeability protein SanA variable Yes
Phage NOLOHH_15610 uridine kinase variable Yes
Phage NOLOHH_15620 outer membrane assembly protein AsmA variable  
Phage NOLOHH_15785 NADP-dependent phosphogluconate dehydrogenase variable  
Phage NOLOHH_16230 DNA-cytosine methyltransferase variable Yes
Phage NOLOHH_16245 Inner membrane protein YedI variable  
Phage NOLOHH_16385 flagellar export chaperone FliS variable  
Phage NOLOHH_16390 flagellar filament capping protein FliD variable  
Phage NOLOHH_16395 flagellin FliC variable  
Phage NOLOHH_16695 dihydroneopterin triphosphate diphosphatase variable  
Phage NOLOHH_16750 murein DD-endopeptidase MepM variable Yes
Phage NOLOHH_18725 multiple antibiotic resistance transcriptional regulator MarR variable Yes
Phage NOLOHH_19335 Uncharacterized HTH-type transcriptional regulator YdcI variable  
Phage NOLOHH_20475 YchJ family protein variable  
Phage NOLOHH_21155 flagellar hook-associated protein FlgL variable  
Phage NOLOHH_21160 flagellar hook-associated protein FlgK variable  
Phage NOLOHH_21925 nicotinate phosphoribosyltransferase variable  
Phage NOLOHH_22750 excinuclease ABC subunit UvrB variable Yes
Phage NOLOHH_22790 phage head-binding domain-containing protein variable  
Phage NOLOHH_22800 DNA transfer protein variable  
Phage NOLOHH_22805 DNA transfer protein variable  
Phage NOLOHH_22900 Serine/threonine-protein phosphatase variable  
Phage NOLOHH_22915 hypothetical protein variable  
Phage NOLOHH_22975 hypothetical protein variable  
Phage NOLOHH_22980 hypothetical protein variable  
Phage NOLOHH_22990 superinfection exclusion protein B variable  
Phage NOLOHH_23040 hypothetical protein variable  
Phage NOLOHH_23050 Ead/Ea22-like protein variable  
Phage NOLOHH_23070 Integrase variable  
Phage NOLOHH_23075 putative acyl-CoA thioester hydrolase variable  
Phage NOLOHH_23135 molybdenum-dependent transcriptional regulator variable  
Phage NOLOHH_23490 esterase variable  
Phage NOLOHH_23755 D-alanyl-D-alanine carboxypeptidase DacA variable  
Phage NOLOHH_23885 alkyl hydroperoxide reductase subunit C variable  
Phage NOLOHH_23985 enterobactin synthase multienzyme complex component, ATP-dependent variable Yes
Phage NOLOHH_24000 ferrienterobactin outer membrane transporter variable Yes
Phage NOLOHH_24010 phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex variable