| Condition | Gene | Description | Fitness | Cons. |
|---|
| MOI 10 | ECD_00062 | DNA polymerase II | variable | |
| MOI 10 | ECD_00065 | L-ribulokinase | variable | |
| MOI 10 | ECD_00066 | ara regulon transcriptional activator; autorepressor | variable | |
| MOI 10 | ECD_00069 | thiamine/thiamine pyrophosphate ABC transporter permease | variable | |
| MOI 10 | ECD_00070 | thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein | variable | |
| MOI 10 | ECD_00071 | transcriptional DNA-binding transcriptional activator of sgrS sRNA | variable | |
| MOI 10 | ECD_00078 | global transcription factor | variable | |
| MOI 10 | ECD_00250 | ECP production outer membrane protein | variable | |
| MOI 10 | ECD_00254 | uncharacterized protein | variable | |
| MOI 10 | ECD_00255 | 50S ribosomal protein L31 type B; alternative zinc-limitation L31 protein | variable | |
| MOI 10 | ECD_00256 | attaching and effacing protein, pathogenesis factor | variable | |
| MOI 10 | ECD_00262 | cysteine-rich LutA family protein; putative electron transport chain YkgEFG component | variable | |
| MOI 10 | ECD_00263 | ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component | variable | |
| MOI 10 | ECD_00264 | LutC family protein; putative electron transport chain YkgEFG component | variable | |
| MOI 10 | ECD_00267 | choline dehydrogenase, a flavoprotein | variable | |
| MOI 10 | ECD_00268 | betaine aldehyde dehydrogenase, NAD-dependent | variable | |
| MOI 10 | ECD_00270 | choline transporter of high affinity | variable | |
| MOI 10 | ECD_00271 | c-di-GMP-specific phosphodiesterase | variable | |
| MOI 10 | ECD_00272 | putative DNA-bindng transcriptional regulator | variable | |
| MOI 10 | ECD_00276 | putative NAD(P)-binding succinyl-CoA synthase | variable | |
| MOI 10 | ECD_00277 | DUF1116 family protein | variable | |
| MOI 10 | ECD_00279 | putative metallo-dependent hydrolase domain deaminase | variable | |
| MOI 10 | ECD_00287 | 2-methylcitrate synthase | variable | |
| MOI 10 | ECD_00424 | protein refolding molecular co-chaperone Hsp90, Hsp70-dependent; heat-shock protein; ATPase | variable | Yes |
| MOI 10 | ECD_00428 | inosine/guanosine kinase | variable | |
| MOI 10 | ECD_00601 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) | variable | |
| MOI 10 | ECD_00688 | succinyl-CoA synthetase, NAD(P)-binding, alpha subunit | variable | |
| MOI 10 | ECD_00725 | acyl-CoA thioesterase, lipoprotein | variable | Yes |
| MOI 10 | ECD_00750 | molybdopterin biosynthesis, protein C | variable | |
| MOI 10 | ECD_00756 | cardiolipin synthase 2 | variable | |
| MOI 10 | ECD_00964 | putative transporter, FUSC superfamily inner membrane protein | variable | |
| MOI 10 | ECD_01891 | putative adhesin | variable | |
| MOI 10 | ECD_02104 | lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase | variable | |
| MOI 10 | ECD_02141 | putative thiamine-synthetic flavin transferase lipoprotein | variable | |
| MOI 10 | ECD_02214 | transcriptional repressor of flagellar, motility and chemotaxis genes | variable | |
| MOI 10 | ECD_02268 | long-chain fatty acid outer membrane transporter | variable | Yes |
| MOI 10 | ECD_02446 | response regulator regulating glmY sRNA in two-component system with sensor protein GlrK | variable | |
| MOI 10 | ECD_02447 | putative outer membrane protein modulating the QseEF response | variable | |
| MOI 10 | ECD_02533 | glycine betaine/proline ABC transporter periplasmic binding protein | variable | Yes |
| MOI 10 | ECD_02593 | L-isoaspartate protein carboxylmethyltransferase type II | +1.2 | |
| MOI 10 | ECD_02641 | putative serine transporter | variable | Yes |
| MOI 10 | ECD_02693 | putative transporter | variable | |
| MOI 10 | ECD_02737 | aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex | variable | |
| MOI 10 | ECD_02747 | transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor | variable | |
| MOI 10 | ECD_02797 | integrase | variable | |
| MOI 10 | ECD_02798 | hypothetical protein | variable | |
| MOI 10 | ECD_02815 | Capsule polysaccharide export inner-membrane protein kpsE | variable | |
| MOI 10 | ECD_02816 | KpsD protein | variable | |
| MOI 10 | ECD_02817 | KpsU protein | variable | |
| MOI 10 | ECD_02818 | Capsule polysaccharide export protein KpsC | variable | |
| MOI 10 | ECD_02828 | Polysialic acid transport protein kpsM | variable | |
| MOI 10 | ECD_02854 | hypothetical protein | variable | |
| MOI 10 | ECD_02874 | DUF2623 family protein | variable | |
| MOI 10 | ECD_02894 | GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system; biofilm/motility regulator; anti-repressor | variable | |
| MOI 10 | ECD_02906 | ADP-ribose pyrophosphatase | variable | |
| MOI 10 | ECD_02923 | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase | -1.6 | |
| MOI 10 | ECD_02924 | inorganic triphosphatase | variable | |
| MOI 10 | ECD_02964 | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter | -4.4 | Yes |
| MOI 10 | ECD_03030 | lipoprotein involved in osmotic sensitivity and filamentation | variable | |
| MOI 10 | ECD_03060 | ABC transporter maintaining OM lipid asymmetry, ATP-binding protein | variable | Yes |
| MOI 10 | ECD_03083 | putative N-acetylmannosamine-6-P epimerase | variable | |
| MOI 10 | ECD_03084 | sialic acid transporter | variable | |
| MOI 10 | ECD_03088 | ClpXP protease specificity enhancing factor | +2.2 | |
| MOI 10 | ECD_03105 | DUF3971-AsmA2 domains protein | variable | Yes |
| MOI 10 | ECD_03111 | targeting factor for csrBC sRNA degradation | variable | Yes |
| MOI 10 | ECD_03225 | putative DNA-binding transcriptional regulator | variable | |
| MOI 10 | ECD_03260 | ferrous iron transporter, protein A | variable | Yes |
| MOI 10 | ECD_03270 | mal regulon transcriptional activator | variable | Yes |
| MOI 10 | ECD_03356 | putative Mg(2+) transport ATPase, inner membrane protein | variable | |
| MOI 10 | ECD_03375 | putative periplasmic M16 family chaperone | variable | |
| MOI 10 | ECD_03377 | cyclic-di-GMP phosphodiesterase | variable | Yes |
| MOI 10 | ECD_03396 | KDO phosphoethanolamine transferase, Ca(2+)-inducible | variable | Yes |
| MOI 10 | ECD_03473 | LPS(HepIII)-glucuronic acid glycosyltransferase | variable | |
| MOI 10 | ECD_03479 | Lipid A-core, surface polymer ligase | variable | |
| MOI 10 | ECD_03516 | Int | variable | |
| MOI 10 | ECD_03519 | putative transcriptional regulator | variable | |
| MOI 10 | ECD_03520 | hypothetical protein | variable | |
| MOI 10 | ECD_03521 | hypothetical protein | variable | |
| MOI 10 | ECD_03522 | Single-strand binding protein (SSB) (Helix-destabilizing protein) | variable | |
| MOI 10 | ECD_03531 | hypothetical protein | variable | |
| MOI 10 | ECD_03557 | multidrug efflux system protein | variable | |
| MOI 10 | ECD_03563 | putative transporter | variable | |
| MOI 10 | ECD_03570 | heat shock chaperone | variable | |
| MOI 10 | ECD_03578 | D-galactonate catabolism operon transcriptional repressor | variable | |
| MOI 10 | ECD_03580 | sugar phosphate phosphatase | variable | |
| MOI 10 | ECD_03626 | FMN-binding protein MioC | variable | |
| MOI 10 | ECD_03663 | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein | variable | |
| MOI 10 | ECD_03664 | UDP-N-acetyl glucosamine-2-epimerase | variable | |
| MOI 10 | ECD_03665 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase | variable | Yes |
| MOI 10 | ECD_03686 | DUF484 family protein | +1.3 | |
| MOI 10 | ECD_03769 | putative transcriptional regulator for sulfoquinovose utilization | variable | |
| MOI 10 | ECD_03776 | formate dehydrogenase formation protein | variable | |
| MOI 10 | ECD_03777 | formate dehydrogenase-O, cytochrome b556 subunit | variable | |
| MOI 10 | ECD_03778 | formate dehydrogenase-O, Fe-S subunit | variable | |
| MOI 10 | ECD_03779 | formate dehydrogenase-O, large subunit | variable | |
| MOI 10 | ECD_03811 | glycerol kinase | variable | |
| MOI 10 | ECD_03812 | glycerol facilitator | variable | |
| MOI 10 | ECD_03819 | Anti-activator for CytR-CRP nucleoside utilization regulon | +1.2 | |
| MOI 10 | ECD_03876 | DUF416 domain protein | variable | Yes |
| MOI 10 | ECD_03904 | maltose transporter subunit | variable | Yes |
| MOI 10 | ECD_03905 | maltose transporter subunit | variable | Yes |
| MOI 10 | ECD_03906 | maltose transporter subunit | variable | |
| MOI 10 | ECD_03907 | maltose ABC transporter ATPase | variable | |
| MOI 10 | ECD_03908 | maltose outer membrane porin (maltoporin) | variable | Yes |
| MOI 10 | ECD_03918 | transcriptional repressor, Zn(II)-binding | variable | Yes |
| MOI 10 | ECD_03932 | putative inner membrane protein | variable | |
| MOI 10 | ECD_03933 | putative membrane-anchored cyclic-di-GMP phosphodiesterase | variable | |
| MOI 10 | ECD_03934 | superoxide response regulon transcriptional activator; autoregulator | variable | |
| MOI 10 | ECD_03935 | redox-sensitive transcriptional activator of soxS; autorepressor | variable | |
| MOI 10 | ECD_03936 | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter | variable | |
| MOI 10 | ECD_03937 | putative cation/proton antiporter | variable | |
| MOI 10 | ECD_03939 | acetate transporter | variable | |
| MOI 10 | ECD_03941 | acetyl-CoA synthetase | variable | |
| MOI 10 | ECD_03942 | nitrite reductase, formate-dependent, cytochrome | variable | |
| MOI 10 | ECD_03982 | proline/glycine betaine transporter | variable | |
| MOI 10 | ECD_04047 | 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent | variable | |
| MOI 10 | ECD_04077 | putative transcriptional regulator | variable | |
| MOI 10 | ECD_04088 | DUF1107 family protein | variable | |
| MOI 10 | ECD_04246 | 16S rRNA m(2)G1207 methyltransferase, SAM-dependent | -2.4 | |
| P2_phage | ECD_00359 | nucleoside channel, receptor of phage T6 and colicin K | +1.4 | |
| P2_phage | ECD_03930 | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | -1.4 | |
| lambda1857_phage | ECD_00149 | ferrichrome outer membrane transporter | +4.6 | |
| lambda1857_phage | ECD_00424 | protein refolding molecular co-chaperone Hsp90, Hsp70-dependent; heat-shock protein; ATPase | +4.4 | |
| lambda1857_phage | ECD_00456 | glyoxylate-inducible transcriptional repressor of all and gcl operons | +1.5 | |
| lambda1857_phage | ECD_00575 | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding | -3.3 | |
| lambda1857_phage | ECD_00887 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | +1.4 | |
| lambda1857_phage | ECD_01173 | putative dihydroxyacetone-specific PTS enzymes: HPr, EI components | +1.9 | |
| lambda1857_phage | ECD_02692 | short chain acyltransferase | -3.1 | |
| lambda1857_phage | ECD_02964 | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter | -3.0 | |
| lambda1857_phage | ECD_03270 | mal regulon transcriptional activator | +6.3 | |
| lambda1857_phage | ECD_03769 | putative transcriptional regulator for sulfoquinovose utilization | +1.9 | |
| lambda1857_phage | ECD_03908 | maltose outer membrane porin (maltoporin) | +6.3 | |
| lambda1857_phage | ECD_04058 | transcriptional repressor for the L-ascorbate utilization divergent operon | +1.5 | |