Specific Phenotypes for Pseudomonas putida KT2440 in pH experiments

Condition	Gene	Description	Fitness	Cons.
D-Glucose	PP_0145	Na+/Pi-cotransporter	variable
D-Glucose	PP_0506	putative ABC efflux transporter, permease protein	variable
D-Glucose	PP_0592	Oxidoreductase, short chain dehydrogenase/reductase family	variable
D-Glucose	PP_0612	FAD-dependent glycine/D-amino acid oxidase	variable
D-Glucose	PP_0901	DNA-binding response regulator	variable
D-Glucose	PP_0902	integral membrane sensor signal transduction histidine kinase	variable
D-Glucose	PP_0998	conserved protein of unknown function	variable
D-Glucose	PP_1013	Sensor histidine kinase	variable
D-Glucose	PP_1015	mannose/glucose ABC transporter, glucose-binding periplasmic protein	variable
D-Glucose	PP_1016	mannose/glucose ABC transporter, permease protein	variable
D-Glucose	PP_1017	mannose/glucose ABC transporter, permease protein	-3.8
D-Glucose	PP_1018	mannose/glucose ABC transporter - ATP binding subunit	-3.5
D-Glucose	PP_1019	carbohydrate-selective porin	variable
D-Glucose	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	variable
D-Glucose	PP_1444	quinoprotein glucose dehydrogenase	variable
D-Glucose	PP_1445	carbohydrate-selective porin	+1.7
D-Glucose	PP_1752	conserved protein of unknown function	variable
D-Glucose	PP_2660	conserved protein of unknown function	variable
D-Glucose	PP_3065	Pyocin R2_PP, tail formation	variable
D-Glucose	PP_3786	aminotransferase	variable
D-Glucose	PP_3801	putative Cation ABC transporter, periplasmic cation-binding protein	variable
D-Glucose	PP_4100	Transcriptional regulator, Cro/CI family	variable
D-Glucose	PP_4776	AsnC family transcriptional regulator	variable
D-Glucose	PP_4779	AMP nucleosidase	variable
D-Glucose	PP_5182	polyamine:pyruvate transaminase	variable
D-Glucose	PP_5320	two-component system DNA-binding transcriptional dual response regulator PhoB	variable	Yes
Trisodium citrate dihydrate	PP_0147	Citrate transporter	-2.1	Yes
Trisodium citrate dihydrate	PP_1416	putative Tricarboxylate transport protein TctA	-2.5
Trisodium citrate dihydrate	PP_1418	putative Tricarboxylate transport protein TctC	-5.3	Yes
Trisodium citrate dihydrate	PP_1419	tricarboxylate-specific outer membrane porin	-2.1	Yes
Trisodium citrate dihydrate	PP_1420	Transcriptional regulatory protein tctD	-5.9	Yes
Trisodium citrate dihydrate	PP_1421	putative Sensor histidine kinase TctE	-5.7	Yes
Trisodium citrate dihydrate	PP_1430	putative periplasmic serine endoprotease DegP-like	variable
Trisodium citrate dihydrate	PP_1689	putative Long-chain fatty acid transporter	variable
Trisodium citrate dihydrate	PP_2082	phosphoenolpyruvate synthetase	-1.1
Trisodium citrate dihydrate	PP_2800	putative Diaminobutyrate-2-oxoglutarate transaminase	variable
Valerolactone	PP_1400	Alpha-ketoglutarate permease	-1.3
Valerolactone	PP_1402	C4-dicarboxylate transport sensor protein	-1.5
Valerolactone	PP_1430	putative periplasmic serine endoprotease DegP-like	-1.9
Valerolactone	PP_1761	diguanylate cyclase with phosphodiesterase domain	+1.5
Valerolactone	PP_2910	L-2-hydroxyglutarate oxidase	-2.2
Valerolactone	PP_4172	conserved exported protein of unknown function	+1.6
Valerolactone	PP_4173	Sensor histidine kinase/response regulator	+2.0
Valerolactone	PP_4629	Sensory box protein	+1.7