Specific Phenotypes for Pseudomonas simiae WCS417 in nitrogen source experiments

Condition Gene Description Fitness Cons.
Adenine hydrochloride hydrate PS417_06060 phosphoenolpyruvate carboxylase -1.3  
Adenine hydrochloride hydrate PS417_07890 hypothetical protein +3.4  
Adenine hydrochloride hydrate PS417_08030 transcriptional regulator -3.8 Yes
Adenine hydrochloride hydrate PS417_08035 adenine transporter (MFS superfamily) (from data) -4.7 Yes
Adenine hydrochloride hydrate PS417_08610 deoxyguanosinetriphosphate triphosphohydrolase -1.1  
Adenine hydrochloride hydrate PS417_12460 hypothetical protein +1.2  
Adenine hydrochloride hydrate PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) -4.5  
Adenine hydrochloride hydrate PS417_19565 TetR family transcriptional regulator -1.2  
Adenine hydrochloride hydrate PS417_21120 phosphoserine phosphatase -2.7  
Adenine hydrochloride hydrate PS417_21980 permease DsdX +2.1  
Adenine hydrochloride hydrate PS417_02425 thiosulfate sulfurtransferase -2.2  
Adenine hydrochloride hydrate PS417_25990 malonyl-CoA O-methyltransferase -2.1  
Adenine hydrochloride hydrate PS417_26000 8-amino-7-oxononanoate synthase -2.3  
Adenine hydrochloride hydrate PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -2.3  
Adenine hydrochloride hydrate PS417_03205 adenine deaminase -1.8 Yes
Adenosine PS417_08035 adenine transporter (MFS superfamily) (from data) -1.1  
Adenosine PS417_08105 N-ethylammeline chlorohydrolase -1.8 Yes
Adenosine PS417_11405 precorrin 6A synthase -2.1  
Adenosine PS417_11505 ion channel protein Tsx +3.8 Yes
Adenosine PS417_12325 precorrin-4 C11-methyltransferase -2.5  
Adenosine PS417_12350 cobalamin biosynthesis protein CobN -1.9 Yes
Adenosine PS417_18375 hypothetical protein -1.3 Yes
Adenosine PS417_20020 cobalamin synthase -1.7  
Adenosine PS417_20035 adenosylcobinamide kinase -1.8  
Adenosine PS417_20040 cobyric acid synthase -2.3  
Adenosine PS417_20045 threonine-phosphate decarboxylase -2.0 Yes
Adenosine PS417_20050 cobalamin biosynthesis protein CobD -2.1 Yes
Adenosine PS417_20060 cobyrinic acid a,c-diamide synthase -1.8 Yes
Adenosine PS417_22525 ATP--cobalamin adenosyltransferase -1.3  
Adenosine PS417_02890 cobalt-precorrin-6X reductase -1.8  
Adenosine PS417_02910 precorrin-2 C20-methyltransferase -1.8 Yes
Adenosine PS417_02915 precorrin-3B C17-methyltransferase -2.3 Yes
Ammonium chloride PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) -2.1  
Ammonium chloride PS417_21980 permease DsdX -1.9  
Ammonium chloride PS417_22695 glyceraldehyde-3-phosphate dehydrogenase -1.5  
Ammonium chloride PS417_25990 malonyl-CoA O-methyltransferase -2.1  
Ammonium chloride PS417_26000 8-amino-7-oxononanoate synthase -3.1  
Ammonium chloride PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -2.9 Yes
Cytidine PS417_09800 cytosine deaminase -3.1 Yes
Cytidine PS417_09810 cytosine permease -2.0  
Cytidine PS417_17325 dihydropyrimidine dehydrogenase -2.7  
Cytidine PS417_17330 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) -2.7  
Cytidine PS417_27615 ammonia channel protein -1.5  
Cytidine PS417_03245 omega amino acid--pyruvate aminotransferase -1.1 Yes
Cytosine PS417_09800 cytosine deaminase -2.0 Yes
Cytosine PS417_09810 cytosine permease -1.3 Yes
Cytosine PS417_17325 dihydropyrimidine dehydrogenase -2.7 Yes
Cytosine PS417_17330 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) -3.5 Yes
Cytosine PS417_03245 omega amino acid--pyruvate aminotransferase -1.4 Yes
Glycine PS417_11405 precorrin 6A synthase +3.0  
Glycine PS417_12325 precorrin-4 C11-methyltransferase +2.7  
Glycine PS417_12345 cobalamin biosynthesis protein CobW +2.9  
Glycine PS417_12350 cobalamin biosynthesis protein CobN +2.8  
Glycine PS417_20020 cobalamin synthase +3.1  
Glycine PS417_20030 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase +2.7  
Glycine PS417_20035 adenosylcobinamide kinase +3.0  
Glycine PS417_20040 cobyric acid synthase +2.9  
Glycine PS417_20045 threonine-phosphate decarboxylase +2.5  
Glycine PS417_20050 cobalamin biosynthesis protein CobD +2.9  
Glycine PS417_20060 cobyrinic acid a,c-diamide synthase +2.7  
Glycine PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) -2.7 Yes
Glycine PS417_22370 Aminomethyltransferase (EC 2.1.2.10) (from data) -2.7 Yes
Glycine PS417_02455 putative transporter, required for glycine utilization (from data) -5.0 Yes
Glycine PS417_27615 ammonia channel protein -3.2 Yes
Glycine PS417_02890 cobalt-precorrin-6X reductase +2.6  
Glycine PS417_02910 precorrin-2 C20-methyltransferase +3.1  
Glycine PS417_02915 precorrin-3B C17-methyltransferase +2.6  
Inosine PS417_05530 membrane protein -4.2  
Inosine PS417_05555 amino acid ABC transporter permease +1.2  
Inosine PS417_07755 hypothetical protein +5.2  
Inosine PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) -2.6  
Inosine PS417_19420 OHCU decarboxylase -3.0 Yes
Inosine PS417_19435 urate hydroxylase (1.7.3.3) (from data) -1.2 Yes
Inosine PS417_02710 Urease maturation and nickel insertion protein UreE (from data) -4.6 Yes
Inosine PS417_27615 ammonia channel protein -4.2  
Inosine PS417_27810 ribonuclease PH +1.5  
Inosine PS417_02785 Urease (EC 3.5.1.5) (from data) -4.2 Yes
Inosine PS417_03740 peptidylprolyl isomerase -3.7 Yes
Putrescine Dihydrochloride PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) -1.8  
Putrescine Dihydrochloride PS417_21030 GntR family transcriptional regulator -1.5  
Putrescine Dihydrochloride PS417_27110 spermidine/putrescine ABC transporter permease -6.0 Yes
Putrescine Dihydrochloride PS417_27115 putrescine ABC transporter, ATPase component (from data) -5.2 Yes
Putrescine Dihydrochloride PS417_27125 spermidine/putrescine ABC transporter substrate-binding protein -3.5 Yes
Putrescine Dihydrochloride PS417_27130 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) -2.7 Yes
Sodium nitrate PS417_08665 molybdopterin-guanine dinucleotide biosynthesis protein A -4.5 Yes
Sodium nitrate PS417_08675 molybdenum cofactor biosynthesis protein MoaA -2.0 Yes
Sodium nitrate PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) -3.1  
Sodium nitrate PS417_14725 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) -4.1 Yes
Sodium nitrate PS417_14730 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) -4.5 Yes
Sodium nitrate PS417_14735 Nitrate reductase (EC 1.7.99.4) (from data) -3.9 Yes
Sodium nitrate PS417_20960 Nitrate-binding regulatory protein (nasS) (from data) -2.1 Yes
Sodium nitrate PS417_20965 histidine kinase -3.8 Yes
Sodium nitrate PS417_20970 MFS transporter -3.0 Yes
Sodium nitrate PS417_20975 protein kinase -1.3  
Sodium nitrate PS417_20980 uroporphyrin-III methyltransferase -2.1 Yes
Sodium nitrate PS417_21395 radical SAM protein -3.9 Yes
Sodium nitrate PS417_25990 malonyl-CoA O-methyltransferase -1.8  
Sodium nitrate PS417_26000 8-amino-7-oxononanoate synthase -3.5  
Sodium nitrate PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -2.4  
Sodium nitrate PS417_27615 ammonia channel protein -1.4 Yes
Urea PS417_05530 membrane protein -3.4 Yes
Urea PS417_07755 hypothetical protein +5.6  
Urea PS417_08430 phospho-2-dehydro-3-deoxyheptonate aldolase -1.6  
Urea PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) -2.0  
Urea PS417_12560 MFS transporter -1.2  
Urea PS417_21980 permease DsdX -1.8  
Urea PS417_02710 Urease maturation and nickel insertion protein UreE (from data) -4.4 Yes
Urea PS417_02785 Urease (EC 3.5.1.5) (from data) -4.5 Yes
Urea PS417_00285 carbonate dehydratase -1.4 Yes
Urea PS417_03740 peptidylprolyl isomerase -5.1 Yes
Uridine PS417_07160 glycine cleavage system protein R -1.7 Yes
Uridine PS417_07375 ribonuclease D -1.2  
Uridine PS417_17325 dihydropyrimidine dehydrogenase -6.5 Yes
Uridine PS417_21030 GntR family transcriptional regulator -1.7  
Uridine PS417_22500 porin -1.7  
Uridine PS417_22740 imelysin -1.2  
Uridine PS417_22745 hypothetical protein -1.3  
Uridine PS417_27615 ammonia channel protein -1.8 Yes
Uridine PS417_03245 omega amino acid--pyruvate aminotransferase -3.6 Yes
Uridine PS417_04685 histidine kinase -1.9 Yes