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Specific Phenotypes for
Pseudomonas simiae WCS417
in nitrogen source experiments
Condition
Gene
Description
Fitness
Cons.
Adenine hydrochloride hydrate
PS417
_06060
phosphoenolpyruvate carboxylase
-1.3
Adenine hydrochloride hydrate
PS417
_07890
hypothetical protein
+3.4
Adenine hydrochloride hydrate
PS417
_08030
transcriptional regulator
-3.8
Yes
Adenine hydrochloride hydrate
PS417
_08035
adenine transporter (MFS superfamily)
(from data)
-4.7
Yes
Adenine hydrochloride hydrate
PS417
_08610
deoxyguanosinetriphosphate triphosphohydrolase
-1.1
Adenine hydrochloride hydrate
PS417
_12460
hypothetical protein
+1.2
Adenine hydrochloride hydrate
PS417
_12555
phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43)
(from data)
-4.5
Adenine hydrochloride hydrate
PS417
_19565
TetR family transcriptional regulator
-1.2
Adenine hydrochloride hydrate
PS417
_21120
phosphoserine phosphatase
-2.7
Adenine hydrochloride hydrate
PS417
_21980
permease DsdX
+2.1
Adenine hydrochloride hydrate
PS417
_02425
thiosulfate sulfurtransferase
-2.2
Adenine hydrochloride hydrate
PS417
_25990
malonyl-CoA O-methyltransferase
-2.1
Adenine hydrochloride hydrate
PS417
_26000
8-amino-7-oxononanoate synthase
-2.3
Adenine hydrochloride hydrate
PS417
_26540
adenosylmethionine-8-amino-7-oxononanoate aminotransferase
-2.3
Adenine hydrochloride hydrate
PS417
_03205
adenine deaminase
-1.8
Yes
Adenosine
PS417
_08035
adenine transporter (MFS superfamily)
(from data)
-1.1
Adenosine
PS417
_08105
N-ethylammeline chlorohydrolase
-1.8
Yes
Adenosine
PS417
_11405
precorrin 6A synthase
-2.1
Adenosine
PS417
_11505
ion channel protein Tsx
+3.8
Yes
Adenosine
PS417
_12325
precorrin-4 C11-methyltransferase
-2.5
Adenosine
PS417
_12350
cobalamin biosynthesis protein CobN
-1.9
Yes
Adenosine
PS417
_18375
hypothetical protein
-1.3
Yes
Adenosine
PS417
_20020
cobalamin synthase
-1.7
Adenosine
PS417
_20035
adenosylcobinamide kinase
-1.8
Adenosine
PS417
_20040
cobyric acid synthase
-2.3
Adenosine
PS417
_20045
threonine-phosphate decarboxylase
-2.0
Yes
Adenosine
PS417
_20050
cobalamin biosynthesis protein CobD
-2.1
Yes
Adenosine
PS417
_20060
cobyrinic acid a,c-diamide synthase
-1.8
Yes
Adenosine
PS417
_22525
ATP--cobalamin adenosyltransferase
-1.3
Adenosine
PS417
_02890
cobalt-precorrin-6X reductase
-1.8
Adenosine
PS417
_02910
precorrin-2 C20-methyltransferase
-1.8
Yes
Adenosine
PS417
_02915
precorrin-3B C17-methyltransferase
-2.3
Yes
Ammonium chloride
PS417
_12555
phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43)
(from data)
-2.1
Ammonium chloride
PS417
_21980
permease DsdX
-1.9
Ammonium chloride
PS417
_22695
glyceraldehyde-3-phosphate dehydrogenase
-1.5
Ammonium chloride
PS417
_25990
malonyl-CoA O-methyltransferase
-2.1
Ammonium chloride
PS417
_26000
8-amino-7-oxononanoate synthase
-3.1
Ammonium chloride
PS417
_26540
adenosylmethionine-8-amino-7-oxononanoate aminotransferase
-2.9
Yes
Cytidine
PS417
_09800
cytosine deaminase
-3.1
Yes
Cytidine
PS417
_09810
cytosine permease
-2.0
Cytidine
PS417
_17325
dihydropyrimidine dehydrogenase
-2.7
Cytidine
PS417
_17330
Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2)
(from data)
-2.7
Cytidine
PS417
_27615
ammonia channel protein
-1.5
Cytidine
PS417
_03245
omega amino acid--pyruvate aminotransferase
-1.1
Yes
Cytosine
PS417
_09800
cytosine deaminase
-2.0
Yes
Cytosine
PS417
_09810
cytosine permease
-1.3
Yes
Cytosine
PS417
_17325
dihydropyrimidine dehydrogenase
-2.7
Yes
Cytosine
PS417
_17330
Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2)
(from data)
-3.5
Yes
Cytosine
PS417
_03245
omega amino acid--pyruvate aminotransferase
-1.4
Yes
Glycine
PS417
_11405
precorrin 6A synthase
+3.0
Glycine
PS417
_12325
precorrin-4 C11-methyltransferase
+2.7
Glycine
PS417
_12345
cobalamin biosynthesis protein CobW
+2.9
Glycine
PS417
_12350
cobalamin biosynthesis protein CobN
+2.8
Glycine
PS417
_20020
cobalamin synthase
+3.1
Glycine
PS417
_20030
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
+2.7
Glycine
PS417
_20035
adenosylcobinamide kinase
+3.0
Glycine
PS417
_20040
cobyric acid synthase
+2.9
Glycine
PS417
_20045
threonine-phosphate decarboxylase
+2.5
Glycine
PS417
_20050
cobalamin biosynthesis protein CobD
+2.9
Glycine
PS417
_20060
cobyrinic acid a,c-diamide synthase
+2.7
Glycine
PS417
_22360
Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2)
(from data)
-2.7
Yes
Glycine
PS417
_22370
Aminomethyltransferase (EC 2.1.2.10)
(from data)
-2.7
Yes
Glycine
PS417
_02455
putative transporter, required for glycine utilization
(from data)
-5.0
Yes
Glycine
PS417
_27615
ammonia channel protein
-3.2
Yes
Glycine
PS417
_02890
cobalt-precorrin-6X reductase
+2.6
Glycine
PS417
_02910
precorrin-2 C20-methyltransferase
+3.1
Glycine
PS417
_02915
precorrin-3B C17-methyltransferase
+2.6
Inosine
PS417
_05530
membrane protein
-4.2
Inosine
PS417
_05555
amino acid ABC transporter permease
+1.2
Inosine
PS417
_07755
hypothetical protein
+5.2
Inosine
PS417
_12555
phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43)
(from data)
-2.6
Inosine
PS417
_19420
OHCU decarboxylase
-3.0
Yes
Inosine
PS417
_19435
urate hydroxylase (1.7.3.3)
(from data)
-1.2
Yes
Inosine
PS417
_02710
Urease maturation and nickel insertion protein UreE
(from data)
-4.6
Yes
Inosine
PS417
_27615
ammonia channel protein
-4.2
Inosine
PS417
_27810
ribonuclease PH
+1.5
Inosine
PS417
_02785
Urease (EC 3.5.1.5)
(from data)
-4.2
Yes
Inosine
PS417
_03740
peptidylprolyl isomerase
-3.7
Yes
Putrescine Dihydrochloride
PS417
_12555
phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43)
(from data)
-1.8
Putrescine Dihydrochloride
PS417
_21030
GntR family transcriptional regulator
-1.5
Putrescine Dihydrochloride
PS417
_27110
spermidine/putrescine ABC transporter permease
-6.0
Yes
Putrescine Dihydrochloride
PS417
_27115
putrescine ABC transporter, ATPase component
(from data)
-5.2
Yes
Putrescine Dihydrochloride
PS417
_27125
spermidine/putrescine ABC transporter substrate-binding protein
-3.5
Yes
Putrescine Dihydrochloride
PS417
_27130
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
(from data)
-2.7
Yes
Sodium nitrate
PS417
_08665
molybdopterin-guanine dinucleotide biosynthesis protein A
-4.5
Yes
Sodium nitrate
PS417
_08675
molybdenum cofactor biosynthesis protein MoaA
-2.0
Yes
Sodium nitrate
PS417
_12555
phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43)
(from data)
-3.1
Sodium nitrate
PS417
_14725
Nitrite reductase (NAD(P)H) (EC 1.7.1.4)
(from data)
-4.1
Yes
Sodium nitrate
PS417
_14730
Nitrite reductase (NAD(P)H) (EC 1.7.1.4)
(from data)
-4.5
Yes
Sodium nitrate
PS417
_14735
Nitrate reductase (EC 1.7.99.4)
(from data)
-3.9
Yes
Sodium nitrate
PS417
_20960
Nitrate-binding regulatory protein (nasS)
(from data)
-2.1
Yes
Sodium nitrate
PS417
_20965
histidine kinase
-3.8
Yes
Sodium nitrate
PS417
_20970
MFS transporter
-3.0
Yes
Sodium nitrate
PS417
_20975
protein kinase
-1.3
Sodium nitrate
PS417
_20980
uroporphyrin-III methyltransferase
-2.1
Yes
Sodium nitrate
PS417
_21395
radical SAM protein
-3.9
Yes
Sodium nitrate
PS417
_25990
malonyl-CoA O-methyltransferase
-1.8
Sodium nitrate
PS417
_26000
8-amino-7-oxononanoate synthase
-3.5
Sodium nitrate
PS417
_26540
adenosylmethionine-8-amino-7-oxononanoate aminotransferase
-2.4
Sodium nitrate
PS417
_27615
ammonia channel protein
-1.4
Yes
Urea
PS417
_05530
membrane protein
-3.4
Yes
Urea
PS417
_07755
hypothetical protein
+5.6
Urea
PS417
_08430
phospho-2-dehydro-3-deoxyheptonate aldolase
-1.6
Urea
PS417
_12555
phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43)
(from data)
-2.0
Urea
PS417
_12560
MFS transporter
-1.2
Urea
PS417
_21980
permease DsdX
-1.8
Urea
PS417
_02710
Urease maturation and nickel insertion protein UreE
(from data)
-4.4
Yes
Urea
PS417
_02785
Urease (EC 3.5.1.5)
(from data)
-4.5
Yes
Urea
PS417
_00285
carbonate dehydratase
-1.4
Yes
Urea
PS417
_03740
peptidylprolyl isomerase
-5.1
Yes
Uridine
PS417
_07160
glycine cleavage system protein R
-1.7
Yes
Uridine
PS417
_07375
ribonuclease D
-1.2
Uridine
PS417
_17325
dihydropyrimidine dehydrogenase
-6.5
Yes
Uridine
PS417
_21030
GntR family transcriptional regulator
-1.7
Uridine
PS417
_22500
porin
-1.7
Uridine
PS417
_22740
imelysin
-1.2
Uridine
PS417
_22745
hypothetical protein
-1.3
Uridine
PS417
_27615
ammonia channel protein
-1.8
Yes
Uridine
PS417
_03245
omega amino acid--pyruvate aminotransferase
-3.6
Yes
Uridine
PS417
_04685
histidine kinase
-1.9
Yes