| Condition | Gene | Description | Fitness | Cons. |
|---|
| 1,6-Hexanediamine | PP_2180 | polyamine:pyruvate transaminase | -1.3 | |
| 1,6-Hexanediamine | PP_2884 | XRE family transcriptional regulator | +3.4 | |
| 1,6-Hexanediamine | PP_3377 | 2-ketogluconate transporter, putative | -1.3 | |
| 1,6-Hexanediamine | PP_4762 | Acyl-CoA thioesterase II | -1.8 | |
| 1,6-Hexanediamine | PP_5177 | spermidine/putrescine ABC transporter - permease subunit | -3.5 | |
| 1,6-Hexanediamine | PP_5178 | spermidine/putrescine ABC transporter - inner membrane subunit | -3.2 | |
| 1,6-Hexanediamine | PP_5179 | spermidine/putrescine ABC transporter - ATP binding subunit | -3.4 | |
| 1,6-Hexanediamine | PP_5181 | spermidine/putrescine ABC transporter - periplasmic subunit | -2.9 | |
| 1,6-Hexanediamine | PP_5182 | polyamine:pyruvate transaminase | -1.8 | |
| 1,6-Hexanediamine | PP_5233 | ammonium transporter AmtB | -2.2 | |
| 1,6-Hexanediamine | PP_5278 | 4-guanidinobutyraldehyde dehydrogenase | -2.0 | |
| 2,6-diaminopimelic acid | PP_0225 | sulfur compound ABC transporter - ATP-binding subunit | -1.3 | |
| 2,6-diaminopimelic acid | PP_0226 | sulfur compound ABC transporter - permease subunit | -1.8 | |
| 2,6-diaminopimelic acid | PP_0227 | periplasmic cystine-binding protein | -1.9 | |
| 2,6-diaminopimelic acid | PP_0383 | Lysine 2-monooxygenase | -1.6 | |
| 2,6-diaminopimelic acid | PP_0409 | Sensory box histidine kinase | +4.6 | |
| 2,6-diaminopimelic acid | PP_1408 | (R)-3-hydroxydecanoyl-ACP:CoA transacylase | -2.2 | |
| 2,6-diaminopimelic acid | PP_3835 | Sensory box histidine kinase | +1.9 | |
| 2,6-diaminopimelic acid | PP_4172 | conserved exported protein of unknown function | +1.8 | |
| 2,6-diaminopimelic acid | PP_4173 | Sensor histidine kinase/response regulator | +2.0 | |
| 2,6-diaminopimelic acid | PP_4363 | Sensor histidine kinase/response regulator | -1.3 | |
| 2,6-diaminopimelic acid | PP_4629 | Sensory box protein | +2.7 | |
| 2,6-diaminopimelic acid | PP_5041 | glycogen phosphorylase | variable | |
| 2,6-diaminopimelic acid | PP_5233 | ammonium transporter AmtB | -1.9 | |
| 2-Azetidinone | PP_0247 | Osmolarity sensor protein EnvZ | +1.1 | |
| 2-Azetidinone | PP_0409 | Sensory box histidine kinase | +1.7 | |
| 2-Azetidinone | PP_0595 | Transcriptional regulator, LysR family | -3.3 | |
| 2-Azetidinone | PP_0597 | methylmalonate-semialdehyde dehydrogenase | -4.0 | |
| 2-Azetidinone | PP_1408 | (R)-3-hydroxydecanoyl-ACP:CoA transacylase | +1.1 | |
| 2-Azetidinone | PP_2245 | Transcriptional regulator, Cro/CI family | +4.1 | |
| 2-Azetidinone | PP_2919 | Transcriptional regulator, LysR family | -3.2 | |
| 2-Azetidinone | PP_2920 | putative nitrogen-containing compound degradation enzyme | -4.4 | |
| 2-Azetidinone | PP_2921 | conserved protein of unknown function | -4.6 | |
| 2-Azetidinone | PP_3377 | 2-ketogluconate transporter, putative | -1.1 | |
| 2-Azetidinone | PP_3761 | Sensor histidine kinase/response regulator | +1.4 | |
| 2-Azetidinone | PP_4629 | Sensory box protein | +1.9 | |
| 2-Azetidinone | PP_4852 | Transcriptional regulator, AraC family | -1.6 | |
| 2-Azetidinone | PP_4959 | diguanylate cyclase | +1.3 | |
| 2-Azetidinone | PP_5041 | glycogen phosphorylase | +1.2 | |
| 2-Azetidinone | PP_5233 | ammonium transporter AmtB | -2.3 | |
| 2-Azetidinone | PP_5465 | conserved protein of unknown function | -1.0 | |
| 2-Piperidinone | PP_2910 | L-2-hydroxyglutarate oxidase | -1.2 | |
| 2-Piperidinone | PP_3514 | 5-oxoprolinase B | -3.8 | |
| 2-Piperidinone | PP_3515 | 5-oxoprolinase A | -4.1 | |
| 2-Piperidinone | PP_3516 | Transcriptional regulator, AraC family | -4.7 | |
| 2-Piperidinone | PP_3776 | putative permease (RarD protein) | -1.4 | |
| 3,5-Dinitrosalicylic acid | PP_1185 | Outer membrane protein H1 | -1.6 | |
| 3,5-Dinitrosalicylic acid | PP_1206 | basic-amino-acid specific porin OprD | -1.7 | |
| 3,5-Dinitrosalicylic acid | PP_3453 | putative Sensor protein RstB | +4.7 | |
| 3-aminobutyric acid | PP_0409 | Sensory box histidine kinase | +1.6 | |
| 3-aminobutyric acid | PP_0596 | Omega-amino acid--pyruvate aminotransferase | -5.4 | Yes |
| 3-aminobutyric acid | PP_0597 | methylmalonate-semialdehyde dehydrogenase | +2.9 | |
| 3-aminobutyric acid | PP_1138 | branched chain amino acid transporter - ATP binding subunit | -1.6 | |
| 3-aminobutyric acid | PP_1139 | branched chain amino acid transporter - permease subunit | -1.1 | |
| 3-aminobutyric acid | PP_2245 | Transcriptional regulator, Cro/CI family | -2.1 | |
| 3-aminobutyric acid | PP_3189 | cytosine deaminase / isoguanine deaminase | -1.2 | |
| 3-aminobutyric acid | PP_4036 | D-hydantoinase/dihydropyrimidinase | -1.8 | |
| 3-aminobutyric acid | PP_4037 | NADP-dependent dihydropyrimidine dehydrogenase subunit | -1.7 | |
| 3-aminobutyric acid | PP_4038 | Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) | -2.3 | |
| 3-aminobutyric acid | PP_4754 | Transcriptional regulator, TetR family | -4.6 | |
| 3-aminobutyric acid | PP_5094 | putative enzyme with PLP binding domain | -1.4 | |
| 4-Guanidinobutyric acid | PP_4523 | putative Agmatinase | -1.2 | |
| 5-Aminovaleric acid | PP_2543 | gamma-aminobutyrate permease | -1.2 | |
| 5-Aminovaleric acid | PP_2909 | glutarate hydroxylase (from data) | -1.4 | |
| 5-Aminovaleric acid | PP_2910 | L-2-hydroxyglutarate oxidase | -2.2 | |
| Adenine hydrochloride hydrate | PP_2250 | Transcriptional regulator, LysR family | -2.4 | |
| Adenine hydrochloride hydrate | PP_2251 | conserved membrane protein of unknown function | -2.3 | |
| Adenine hydrochloride hydrate | PP_3530 | putative S-ureidoglycine aminohydrolase | -3.0 | |
| Adenine hydrochloride hydrate | PP_4286 | allantoinase | -1.4 | Yes |
| Adenine hydrochloride hydrate | PP_4287 | 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | -2.9 | Yes |
| Ammonium chloride | PP_0237 | aliphatic sulfonate ABC transporter - periplasmic binding protein / transport of isethionate | -1.7 | |
| Ammonium chloride | PP_0238 | alkanesulfonate monooxygenase | -1.7 | Yes |
| Ammonium chloride | PP_0380 | Coenzyme PQQ synthesis protein A | -1.6 | |
| Ammonium chloride | PP_0586 | cadmium translocating P-type ATPase | variable | |
| Ammonium chloride | PP_0793 | Phosphotransferase system, fructose-specific EI/HPr/EIIA components | -1.9 | |
| Ammonium chloride | PP_0795 | fructose PTS permease - IIBC component | -1.7 | |
| Ammonium chloride | PP_1013 | Sensor histidine kinase | -1.4 | |
| Ammonium chloride | PP_1016 | mannose/glucose ABC transporter, permease protein | -1.7 | |
| Ammonium chloride | PP_1018 | mannose/glucose ABC transporter - ATP binding subunit | -1.9 | |
| Ammonium chloride | PP_1444 | quinoprotein glucose dehydrogenase | -1.8 | |
| Ammonium chloride | PP_1445 | carbohydrate-selective porin | +1.5 | |
| Ammonium chloride | PP_1460 | putative Membrane protein | variable | |
| Ammonium chloride | PP_3415 | Transcriptional regulator, LacI family | +1.7 | |
| Ammonium chloride | PP_3819 | glutathione reductase (NADPH) | -2.4 | |
| Ammonium chloride | PP_4147 | microcin C transporter - periplasmic binding protein | -1.1 | |
| Ammonium chloride | PP_4148 | putative inner membrane ABC transporter permease protein | -1.3 | |
| Ammonium chloride | PP_4150 | microcin C transporter - ATP binding subunit | -1.5 | |
| Ammonium chloride | PP_5380 | copper resistance protein A | variable | |
| Beta-alanine | PP_0213 | succinate-semialdehyde dehydrogenase (NADP+) | -2.8 | |
| Beta-alanine | PP_0410 | DNA-binding response regulator UhpA | -1.4 | |
| Beta-alanine | PP_0411 | Polyamine ABC transporter, ATP-binding protein | -1.3 | |
| Beta-alanine | PP_0412 | Polyamine ABC transporter, periplasmic polyamine-binding protein | -1.3 | |
| Beta-alanine | PP_0414 | Polyamine ABC transporter, permease protein | -1.5 | |
| Beta-alanine | PP_0595 | Transcriptional regulator, LysR family | -7.9 | |
| Beta-alanine | PP_0596 | Omega-amino acid--pyruvate aminotransferase | -8.0 | Yes |
| Beta-alanine | PP_0597 | methylmalonate-semialdehyde dehydrogenase | -6.0 | |
| Beta-alanine | PP_1059 | Uncharacterized amino acid permease YtnA | +1.2 | |
| Beta-alanine | PP_1789 | Hydrolase, haloacid dehalogenase-like family | -1.4 | |
| Beta-alanine | PP_2332 | conserved exported protein of unknown function | +1.2 | |
| Beta-alanine | PP_2908 | DNA-binding transcriptional repressor | -1.8 | |
| Beta-alanine | PP_3436 | chloramphenicol-sensitive protein | -2.5 | |
| Beta-alanine | PP_4477 | N-succinylarginine dihydrolase | -1.6 | |
| Beta-alanine | PP_4840 | D-alanine, beta-alanine, D-serine, glycine permease | +1.1 | |
| Beta-alanine | PP_4900 | epoxyqueuosine reductase | -1.2 | |
| Beta-alanine | PP_5233 | ammonium transporter AmtB | -1.5 | |
| Beta-alanine | PP_5270 | D-amino-acid:quinone oxidoreductase (deaminating) | -4.9 | Yes |
| Betaine | PP_0298 | AraC-family transcriptional regulator | -1.1 | Yes |
| Betaine | PP_0308 | putative dipeptidase | -2.4 | |
| Betaine | PP_0309 | conserved protein of unknown function | -1.9 | |
| Betaine | PP_0310 | putative dimethylglycine dehydrogenase subunit | -2.2 | |
| Betaine | PP_0311 | putative dimethylglycine dehydrogenase subunit | -2.2 | |
| Betaine | PP_0312 | electron transfer flavoprotein, alpha subunit | -1.7 | |
| Betaine | PP_0315 | putative glycine-betaine dioxygenase subunit | -1.2 | Yes |
| Betaine | PP_0316 | putative glycine-betaine dioxygenase subunit | -1.1 | Yes |
| Betaine | PP_0322 | serine hydroxymethyltransferase | -2.7 | |
| Betaine | PP_0323 | sarcosine oxidase subunit beta | -2.6 | |
| Betaine | PP_0324 | sarcosine oxidase subunit delta | -3.0 | Yes |
| Betaine | PP_0325 | sarcosine oxidase subunit alpha | -2.9 | Yes |
| Betaine | PP_0326 | sarcosine oxidase subunit gamma | -2.8 | |
| Betaine | PP_1615 | Transcriptional regulator, LysR family | -1.9 | |
| Betaine | PP_1616 | formaldehyde dehydrogenase, glutathione-dependent | -2.2 | Yes |
| Butyrolactam | PP_1968 | TetR family transcriptional regulator | -1.9 | |
| Butyrolactam | PP_2919 | Transcriptional regulator, LysR family | -4.6 | |
| Butyrolactam | PP_2920 | putative nitrogen-containing compound degradation enzyme | -4.7 | |
| Butyrolactam | PP_2921 | conserved protein of unknown function | -4.4 | |
| Butyrolactam | PP_2922 | Urea amidolyase-related protein | -5.1 | |
| Cadaverine | PP_2180 | polyamine:pyruvate transaminase | -1.3 | |
| Cadaverine | PP_2884 | XRE family transcriptional regulator | +1.7 | |
| Cadaverine | PP_5177 | spermidine/putrescine ABC transporter - permease subunit | -2.9 | |
| Cadaverine | PP_5178 | spermidine/putrescine ABC transporter - inner membrane subunit | -2.7 | |
| Cadaverine | PP_5179 | spermidine/putrescine ABC transporter - ATP binding subunit | -2.8 | |
| Cadaverine | PP_5181 | spermidine/putrescine ABC transporter - periplasmic subunit | -2.4 | |
| Cadaverine | PP_5278 | 4-guanidinobutyraldehyde dehydrogenase | -3.1 | |
| Caprolactam | PP_0247 | Osmolarity sensor protein EnvZ | -1.3 | |
| Caprolactam | PP_0409 | Sensory box histidine kinase | +1.4 | |
| Caprolactam | PP_2181 | Transcriptional regulator, Cro/CI family | +7.5 | |
| Caprolactam | PP_2884 | XRE family transcriptional regulator | +5.1 | |
| Caprolactam | PP_3377 | 2-ketogluconate transporter, putative | -1.6 | |
| Caprolactam | PP_3514 | 5-oxoprolinase B | +1.3 | |
| Caprolactam | PP_3515 | 5-oxoprolinase A | +1.2 | |
| Caprolactam | PP_3516 | Transcriptional regulator, AraC family | +1.3 | |
| Caprolactam | PP_4398 | Major facilitator family transporter | +3.0 | |
| Caprolactam | PP_4422 | succinate-semialdehyde dehydrogenase (NADP+) | +3.5 | |
| Caprolactam | PP_4762 | Acyl-CoA thioesterase II | -2.3 | |
| Caprolactam | PP_5072 | efflux transporter | -2.0 | |
| Caprolactam | PP_5268 | DNA-binding transcriptional repressor PuuR-putrescine | +2.8 | |
| Carnitine Hydrochloride | PP_0294 | Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) | -3.1 | Yes |
| Carnitine Hydrochloride | PP_0295 | choline / betaine / carnitine ABC transporter - membrane subunit | -3.2 | Yes |
| Carnitine Hydrochloride | PP_0296 | choline / betaine / carnitine ABC transporter - substrate binding protein | -1.7 | Yes |
| Carnitine Hydrochloride | PP_0298 | AraC-family transcriptional regulator | -3.6 | Yes |
| Carnitine Hydrochloride | PP_0301 | betainyl-CoA thiolase | -3.4 | Yes |
| Carnitine Hydrochloride | PP_0302 | L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) | -2.9 | Yes |
| Carnitine Hydrochloride | PP_0303 | dehydrocarnitine cleavage enzyme | -3.4 | Yes |
| Carnitine Hydrochloride | PP_0304 | Carnitine uptake ABC transporter, periplasmic component | -2.8 | Yes |
| Carnitine Hydrochloride | PP_0305 | HTH-type transcriptional regulator CdhR | -2.6 | Yes |
| Carnitine Hydrochloride | PP_0308 | putative dipeptidase | -3.3 | Yes |
| Carnitine Hydrochloride | PP_0309 | conserved protein of unknown function | -3.0 | Yes |
| Carnitine Hydrochloride | PP_0310 | putative dimethylglycine dehydrogenase subunit | -3.7 | Yes |
| Carnitine Hydrochloride | PP_0311 | putative dimethylglycine dehydrogenase subunit | -3.2 | Yes |
| Carnitine Hydrochloride | PP_0312 | electron transfer flavoprotein, alpha subunit | -3.6 | Yes |
| Carnitine Hydrochloride | PP_0315 | putative glycine-betaine dioxygenase subunit | -3.2 | Yes |
| Carnitine Hydrochloride | PP_0316 | putative glycine-betaine dioxygenase subunit | -3.1 | Yes |
| Carnitine Hydrochloride | PP_0322 | serine hydroxymethyltransferase | -2.7 | Yes |
| Carnitine Hydrochloride | PP_0323 | sarcosine oxidase subunit beta | -4.1 | Yes |
| Carnitine Hydrochloride | PP_0324 | sarcosine oxidase subunit delta | -3.6 | Yes |
| Carnitine Hydrochloride | PP_0325 | sarcosine oxidase subunit alpha | -3.5 | Yes |
| Carnitine Hydrochloride | PP_0326 | sarcosine oxidase subunit gamma | -3.6 | |
| Carnitine Hydrochloride | PP_0901 | DNA-binding response regulator | -1.4 | |
| Carnitine Hydrochloride | PP_0902 | integral membrane sensor signal transduction histidine kinase | -1.6 | |
| Carnitine Hydrochloride | PP_5719 | choline-responsive transcriptional repressor BetI | +1.3 | |
| Choline chloride | PP_0294 | Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) | -1.5 | |
| Choline chloride | PP_0295 | choline / betaine / carnitine ABC transporter - membrane subunit | -1.2 | |
| Choline chloride | PP_0298 | AraC-family transcriptional regulator | -1.4 | Yes |
| Choline chloride | PP_0308 | putative dipeptidase | -2.4 | |
| Choline chloride | PP_0309 | conserved protein of unknown function | -2.3 | |
| Choline chloride | PP_0310 | putative dimethylglycine dehydrogenase subunit | -2.1 | |
| Choline chloride | PP_0311 | putative dimethylglycine dehydrogenase subunit | -2.4 | |
| Choline chloride | PP_0312 | electron transfer flavoprotein, alpha subunit | -2.3 | |
| Choline chloride | PP_0315 | putative glycine-betaine dioxygenase subunit | -1.9 | Yes |
| Choline chloride | PP_0316 | putative glycine-betaine dioxygenase subunit | -1.8 | Yes |
| Choline chloride | PP_0322 | serine hydroxymethyltransferase | -2.4 | |
| Choline chloride | PP_0323 | sarcosine oxidase subunit beta | -2.3 | |
| Choline chloride | PP_0324 | sarcosine oxidase subunit delta | -2.5 | |
| Choline chloride | PP_0325 | sarcosine oxidase subunit alpha | -2.5 | |
| Choline chloride | PP_0326 | sarcosine oxidase subunit gamma | -2.4 | |
| Choline chloride | PP_5064 | choline dehydrogenase | -1.2 | Yes |
| Cytosine | PP_3187 | Cytosine transporter | -1.2 | Yes |
| Cytosine | PP_3189 | cytosine deaminase / isoguanine deaminase | -1.4 | Yes |
| D-2-Aminobutyric acid | PP_0163 | putative transcriptional regulator | +1.1 | |
| D-2-Aminobutyric acid | PP_0298 | AraC-family transcriptional regulator | +1.6 | |
| D-2-Aminobutyric acid | PP_0310 | putative dimethylglycine dehydrogenase subunit | -2.5 | |
| D-2-Aminobutyric acid | PP_0311 | putative dimethylglycine dehydrogenase subunit | -2.9 | |
| D-2-Aminobutyric acid | PP_0312 | electron transfer flavoprotein, alpha subunit | -3.4 | |
| D-2-Aminobutyric acid | PP_0353 | Exonuclease | -1.5 | |
| D-2-Aminobutyric acid | PP_0400 | CO2+/MG2+ efflux protein | -1.8 | |
| D-2-Aminobutyric acid | PP_0597 | methylmalonate-semialdehyde dehydrogenase | -3.0 | |
| D-2-Aminobutyric acid | PP_0672 | Sensory box protein | -1.5 | |
| D-2-Aminobutyric acid | PP_0680 | ATP-dependent protease-like protein | -1.5 | |
| D-2-Aminobutyric acid | PP_0887 | Sensor histidine kinase | -2.1 | |
| D-2-Aminobutyric acid | PP_0973 | Nucleoid-associated protein PP_0973 | +2.0 | |
| D-2-Aminobutyric acid | PP_0987 | L-serine dehydratase | +1.2 | |
| D-2-Aminobutyric acid | PP_1009 | glyceraldehyde-3-phosphate dehydrogenase | -2.0 | |
| D-2-Aminobutyric acid | PP_1013 | Sensor histidine kinase | -4.7 | |
| D-2-Aminobutyric acid | PP_1014 | aldose-ketose isomerase | -2.0 | |
| D-2-Aminobutyric acid | PP_1015 | mannose/glucose ABC transporter, glucose-binding periplasmic protein | -3.6 | |
| D-2-Aminobutyric acid | PP_1016 | mannose/glucose ABC transporter, permease protein | -3.5 | |
| D-2-Aminobutyric acid | PP_1017 | mannose/glucose ABC transporter, permease protein | -2.9 | |
| D-2-Aminobutyric acid | PP_1018 | mannose/glucose ABC transporter - ATP binding subunit | -3.3 | |
| D-2-Aminobutyric acid | PP_1021 | DNA-binding transcriptional regulator | +3.0 | |
| D-2-Aminobutyric acid | PP_1059 | Uncharacterized amino acid permease YtnA | +2.3 | |
| D-2-Aminobutyric acid | PP_1137 | high-affinity branched-chain amino acid transporter, ATP binding | +2.1 | |
| D-2-Aminobutyric acid | PP_1138 | branched chain amino acid transporter - ATP binding subunit | +2.4 | |
| D-2-Aminobutyric acid | PP_1139 | branched chain amino acid transporter - permease subunit | +1.8 | |
| D-2-Aminobutyric acid | PP_1140 | branched chain amino acid transporter - permease subunit | +1.8 | |
| D-2-Aminobutyric acid | PP_1141 | branched-chain amino acids ABC transporter - periplasmic leucine binding subunit | +1.6 | |
| D-2-Aminobutyric acid | PP_1301 | quality control serine endoprotease DegS | -2.6 | |
| D-2-Aminobutyric acid | PP_1505 | Phosphoenolpyruvate carboxylase | -2.1 | |
| D-2-Aminobutyric acid | PP_1917 | 4-amino-4-deoxychorismate lyase | -2.2 | |
| D-2-Aminobutyric acid | PP_2019 | adhesin-associated MmpL efflux pump (from data) | +1.3 | |
| D-2-Aminobutyric acid | PP_2211 | Transcriptional regulator, AraC family | -3.8 | |
| D-2-Aminobutyric acid | PP_2213 | putative acyl-CoA synthetase | -1.7 | |
| D-2-Aminobutyric acid | PP_2216 | short-chain acyl-CoA dehydrogenase | -3.1 | |
| D-2-Aminobutyric acid | PP_2245 | Transcriptional regulator, Cro/CI family | -5.7 | |
| D-2-Aminobutyric acid | PP_2326 | Universal stress protein | -1.8 | |
| D-2-Aminobutyric acid | PP_2389 | conserved protein of unknown function | +2.3 | |
| D-2-Aminobutyric acid | PP_2462 | conserved protein of unknown function | +1.9 | |
| D-2-Aminobutyric acid | PP_2683 | putative sensory box histidine kinase/response regulator | +1.8 | |
| D-2-Aminobutyric acid | PP_3377 | 2-ketogluconate transporter, putative | -1.5 | |
| D-2-Aminobutyric acid | PP_3415 | Transcriptional regulator, LacI family | +6.2 | |
| D-2-Aminobutyric acid | PP_3596 | D-lysine oxidase | -2.6 | |
| D-2-Aminobutyric acid | PP_3653 | Transporter, LysE family | -4.9 | |
| D-2-Aminobutyric acid | PP_3957 | choline/carnitine/betaine transporter BetTC | +1.7 | |
| D-2-Aminobutyric acid | PP_4011 | isocitrate dehydrogenase, NADP(+)-specific | +1.1 | |
| D-2-Aminobutyric acid | PP_4179 | Chaperone protein HtpG | +1.3 | |
| D-2-Aminobutyric acid | PP_4401 | branched-chain alpha-keto acid dehydrogenase complex, alpha subunit | -4.7 | |
| D-2-Aminobutyric acid | PP_4402 | branched-chain alpha-keto acid dehydrogenase complex, beta subunit | -4.7 | |
| D-2-Aminobutyric acid | PP_4403 | Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex | -5.0 | |
| D-2-Aminobutyric acid | PP_4404 | dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex | -4.1 | |
| D-2-Aminobutyric acid | PP_4487 | acetyl-CoA synthetase | -1.9 | |
| D-2-Aminobutyric acid | PP_4549 | long-chain-fatty-acid/CoA ligase | +1.7 | |
| D-2-Aminobutyric acid | PP_4640 | conserved protein of unknown function | +2.8 | |
| D-2-Aminobutyric acid | PP_4641 | putative transporter | +3.1 | |
| D-2-Aminobutyric acid | PP_4654 | tRNA/tmRNA (uracil-C(5))-methyltransferase | -2.8 | |
| D-2-Aminobutyric acid | PP_4754 | Transcriptional regulator, TetR family | -4.6 | |
| D-2-Aminobutyric acid | PP_4756 | gamma-aminobutyrate permease | +1.2 | |
| D-2-Aminobutyric acid | PP_4776 | AsnC family transcriptional regulator | +6.1 | |
| D-2-Aminobutyric acid | PP_4840 | D-alanine, beta-alanine, D-serine, glycine permease | +1.7 | |
| D-2-Aminobutyric acid | PP_4850 | conserved membrane protein of unknown function | +1.6 | |
| D-2-Aminobutyric acid | PP_4864 | High-affinity branched-chain amino acid transport ATP-binding protein BraF | +1.6 | |
| D-2-Aminobutyric acid | PP_4865 | High-affinity branched-chain amino acid transport system permease protein BraE | +1.3 | |
| D-2-Aminobutyric acid | PP_4866 | High-affinity branched-chain amino acid transport system permease protein BraD | +1.4 | |
| D-2-Aminobutyric acid | PP_4867 | branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) | +1.4 | |
| D-2-Aminobutyric acid | PP_5103 | tRNA (guanine-N(7)-)-methyltransferase | +1.2 | |
| D-2-Aminobutyric acid | PP_5183 | glutamylpolyamine synthetase | -2.8 | |
| D-2-Aminobutyric acid | PP_5233 | ammonium transporter AmtB | -2.3 | |
| D-2-Aminobutyric acid | PP_5270 | D-amino-acid:quinone oxidoreductase (deaminating) | -4.7 | |
| D-2-Aminobutyric acid | PP_5283 | periplasmic dipeptide transport protein | +1.4 | |
| D-2-Aminobutyric acid | PP_5426 | conserved protein of unknown function | -2.0 | |
| D-Alanine | PP_2245 | Transcriptional regulator, Cro/CI family | +1.3 | |
| D-Alanine | PP_4947 | proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase | +1.7 | |
| D-Alanine | PP_5271 | DNA-binding transcriptional dual regulator, leucine-binding | -2.1 | Yes |
| D-Glucose | PP_0211 | conserved protein of unknown function | variable | |
| D-Glucose | PP_1202 | putative enzyme involved in modification of phospholipids | variable | |
| D-Glucose | PP_1703 | assimilatory nitrate reductase/sulfite reductase | variable | Yes |
| D-Glucose | PP_1705 | nitrite reductase [NAD(P)H] large subunit | variable | Yes |
| D-Glucose | PP_1706 | Nitrite reductase | variable | |
| D-Glucose | PP_2092 | Nitrate transporter | variable | Yes |
| D-Glucose | PP_2093 | NasT | variable | Yes |
| D-Glucose | PP_2094 | putative Nitrate-binding protein NasS | -3.4 | Yes |
| D-Glucose | PP_2123 | molybdenum::molybdopterin ligase | variable | |
| D-Glucose | PP_2349 | nitrite transporter, HPP family (from data) | variable | |
| D-Lysine | PP_3591 | Delta 1-piperideine-2-carboxylate reductase | -2.7 | |
| D-Lysine | PP_3592 | Transcriptional regulator, RpiR family | -4.8 | |
| D-Lysine | PP_3593 | L-lysine and D-lysine ABC transporter, substrate-binding component (from data) | -5.5 | |
| D-Lysine | PP_3594 | L-lysine and D-lysine ABC transporter, permease component 1 (from data) | -5.4 | |
| D-Lysine | PP_3595 | L-lysine and D-lysine ABC transporter, permease component 2 (from data) | -5.0 | |
| D-Lysine | PP_3596 | D-lysine oxidase | -5.9 | |
| D-Lysine | PP_3597 | L-lysine and D-lysine ABC transporter, ATPase component (from data) | -3.6 | |
| D-Lysine | PP_5257 | L-pipecolate oxidase | -2.8 | |
| D-Lysine | PP_5258 | L-piperidine-6-carboxylate dehydrogenase | -2.6 | |
| D-Lysine | PP_5260 | 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) | -3.1 | |
| DL-2-Aminobutyric acid | PP_0020 | hypothetical protein | +1.3 | |
| DL-2-Aminobutyric acid | PP_0118 | zinc import ATP-binding protein | +2.0 | |
| DL-2-Aminobutyric acid | PP_0128 | conserved protein of unknown function | +1.0 | |
| DL-2-Aminobutyric acid | PP_0137 | glutamate/aspartate-proton DAACS transporter | -3.1 | |
| DL-2-Aminobutyric acid | PP_0146 | putative transport protein | -1.1 | |
| DL-2-Aminobutyric acid | PP_0234 | outer-membrane porin E | +1.1 | |
| DL-2-Aminobutyric acid | PP_0247 | Osmolarity sensor protein EnvZ | -1.5 | |
| DL-2-Aminobutyric acid | PP_0266 | Agmatine deiminase | +1.1 | |
| DL-2-Aminobutyric acid | PP_0380 | Coenzyme PQQ synthesis protein A | +1.9 | |
| DL-2-Aminobutyric acid | PP_0409 | Sensory box histidine kinase | +3.1 | |
| DL-2-Aminobutyric acid | PP_0412 | Polyamine ABC transporter, periplasmic polyamine-binding protein | +1.1 | |
| DL-2-Aminobutyric acid | PP_0428 | aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase | -1.1 | |
| DL-2-Aminobutyric acid | PP_0575 | conserved membrane protein of unknown function | -2.5 | |
| DL-2-Aminobutyric acid | PP_0594 | Transcriptional regulator, TetR family | -1.1 | |
| DL-2-Aminobutyric acid | PP_0597 | methylmalonate-semialdehyde dehydrogenase | -1.7 | |
| DL-2-Aminobutyric acid | PP_0680 | ATP-dependent protease-like protein | -3.4 | |
| DL-2-Aminobutyric acid | PP_0850 | Dual-specificity RNA methyltransferase RlmN | +1.6 | |
| DL-2-Aminobutyric acid | PP_0864 | ornithine decarboxylase | +1.2 | |
| DL-2-Aminobutyric acid | PP_0899 | putative Ferredoxin reductase | -1.0 | |
| DL-2-Aminobutyric acid | PP_1066 | C4-dicarboxylate transport transcriptional regulatory protein | -2.9 | |
| DL-2-Aminobutyric acid | PP_1067 | Sensor histidine kinase | -3.6 | |
| DL-2-Aminobutyric acid | PP_1071 | glutamate / aspartate ABC transporter - periplasmic binding protein | -1.8 | |
| DL-2-Aminobutyric acid | PP_1236 | putative Glycine cleavage system transcriptional repressor | +1.4 | |
| DL-2-Aminobutyric acid | PP_1291 | PhoH family protein | +1.5 | |
| DL-2-Aminobutyric acid | PP_1444 | quinoprotein glucose dehydrogenase | +3.1 | |
| DL-2-Aminobutyric acid | PP_1758 | putative sulfurtransferase containing rhodanese-like domain | +1.9 | |
| DL-2-Aminobutyric acid | PP_1827 | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | +1.5 | |
| DL-2-Aminobutyric acid | PP_1842 | Glutamine amidotransferase, class I | -1.2 | |
| DL-2-Aminobutyric acid | PP_2096 | fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase | +1.1 | |
| DL-2-Aminobutyric acid | PP_2181 | Transcriptional regulator, Cro/CI family | +1.7 | |
| DL-2-Aminobutyric acid | PP_2211 | Transcriptional regulator, AraC family | -2.4 | |
| DL-2-Aminobutyric acid | PP_2216 | short-chain acyl-CoA dehydrogenase | -1.9 | |
| DL-2-Aminobutyric acid | PP_2245 | Transcriptional regulator, Cro/CI family | -4.3 | |
| DL-2-Aminobutyric acid | PP_2389 | conserved protein of unknown function | +4.0 | |
| DL-2-Aminobutyric acid | PP_3377 | 2-ketogluconate transporter, putative | -1.6 | |
| DL-2-Aminobutyric acid | PP_3380 | 2-ketogluconate utilization repressor | -1.7 | |
| DL-2-Aminobutyric acid | PP_3415 | Transcriptional regulator, LacI family | +2.3 | |
| DL-2-Aminobutyric acid | PP_3504 | conserved protein of unknown function | -1.3 | |
| DL-2-Aminobutyric acid | PP_3654 | leucine-responsive regulatory protein | -4.2 | |
| DL-2-Aminobutyric acid | PP_3761 | Sensor histidine kinase/response regulator | +1.6 | |
| DL-2-Aminobutyric acid | PP_4059 | fused trehalose synthase B/maltokinase | +1.3 | |
| DL-2-Aminobutyric acid | PP_4184 | branched chain amino acid transporter | +3.5 | |
| DL-2-Aminobutyric acid | PP_4197 | Transcriptional regulator, GntR family | -1.0 | |
| DL-2-Aminobutyric acid | PP_4400 | Bkd operon transcriptional regulator | -1.4 | |
| DL-2-Aminobutyric acid | PP_4401 | branched-chain alpha-keto acid dehydrogenase complex, alpha subunit | -1.8 | |
| DL-2-Aminobutyric acid | PP_4402 | branched-chain alpha-keto acid dehydrogenase complex, beta subunit | -1.7 | |
| DL-2-Aminobutyric acid | PP_4403 | Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex | -2.0 | |
| DL-2-Aminobutyric acid | PP_4483 | histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit | +1.6 | |
| DL-2-Aminobutyric acid | PP_4484 | histidine / lysine / arginine / ornithine ABC transporter - permease subunit | +2.6 | |
| DL-2-Aminobutyric acid | PP_4485 | histidine / lysine / arginine / ornithine ABC transporter - permease subunit | +2.5 | |
| DL-2-Aminobutyric acid | PP_4486 | lysine / arginine / ornithine ABC transporter - periplasmic binding protein | +2.6 | |
| DL-2-Aminobutyric acid | PP_4487 | acetyl-CoA synthetase | -1.6 | |
| DL-2-Aminobutyric acid | PP_4632 | dihydrofolate reductase / dihydromonapterin reductase | -1.8 | |
| DL-2-Aminobutyric acid | PP_4641 | putative transporter | +1.1 | |
| DL-2-Aminobutyric acid | PP_4654 | tRNA/tmRNA (uracil-C(5))-methyltransferase | -2.5 | |
| DL-2-Aminobutyric acid | PP_4692 | putative aspartate/tyrosine/aromatic aminotransferase | -1.7 | |
| DL-2-Aminobutyric acid | PP_4779 | AMP nucleosidase | -3.8 | |
| DL-2-Aminobutyric acid | PP_4893 | GTPase HflX | -1.2 | |
| DL-2-Aminobutyric acid | PP_4896 | DNA mismatch repair protein MutL | -1.5 | |
| DL-2-Aminobutyric acid | PP_4947 | proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase | -1.5 | |
| DL-2-Aminobutyric acid | PP_4959 | diguanylate cyclase | +1.6 | |
| DL-2-Aminobutyric acid | PP_4985 | 16S rRNA m3U1498 methyltransferase | -1.5 | |
| DL-2-Aminobutyric acid | PP_5072 | efflux transporter | +1.3 | |
| DL-2-Aminobutyric acid | PP_5233 | ammonium transporter AmtB | -2.2 | |
| DL-2-Aminobutyric acid | PP_5270 | D-amino-acid:quinone oxidoreductase (deaminating) | -3.0 | |
| DL-2-Aminobutyric acid | PP_5271 | DNA-binding transcriptional dual regulator, leucine-binding | -2.1 | |
| DL-2-Aminobutyric acid | PP_5332 | conserved protein of unknown function | -1.1 | |
| DL-3-Aminoisobutyric acid | PP_0411 | Polyamine ABC transporter, ATP-binding protein | -1.2 | |
| DL-3-Aminoisobutyric acid | PP_0595 | Transcriptional regulator, LysR family | -6.3 | |
| DL-3-Aminoisobutyric acid | PP_0596 | Omega-amino acid--pyruvate aminotransferase | -6.6 | |
| DL-3-Aminoisobutyric acid | PP_0597 | methylmalonate-semialdehyde dehydrogenase | -1.7 | |
| DL-3-Aminoisobutyric acid | PP_5271 | DNA-binding transcriptional dual regulator, leucine-binding | -2.5 | |
| Ethanolamine | PP_0542 | ethanolamine ammonia-lyase, beta-subunit | -3.5 | |
| Ethanolamine | PP_0543 | ethanolamine ammonia-lyase, alpha-subunit | -3.1 | |
| Ethanolamine | PP_0546 | sigma-54 dependent transcriptional regulator | -1.1 | |
| Ethanolamine | PP_1349 | ATP:cob(I)alamin adenosyltransferase | -2.3 | Yes |
| Glycine | PP_0986 | aminomethyltransferase | -5.2 | Yes |
| Glycine | PP_0988 | glycine dehydrogenase | -4.7 | Yes |
| Glycine | PP_0989 | glycine cleavage system H protein 1 | -5.6 | Yes |
| Glycine | PP_0997 | Sigma-54 dependent transcriptional regulator/sensory box protein | -4.5 | Yes |
| Glycine | PP_1127 | Carboxylesterase | -1.4 | Yes |
| Glycine | PP_4901 | conserved inner membrane protein | -3.6 | Yes |
| Hippuric acid | PP_0986 | aminomethyltransferase | -5.6 | |
| Hippuric acid | PP_0988 | glycine dehydrogenase | -5.9 | |
| Hippuric acid | PP_0997 | Sigma-54 dependent transcriptional regulator/sensory box protein | -5.7 | |
| Hippuric acid | PP_1127 | Carboxylesterase | -2.7 | |
| Hippuric acid | PP_1377 | beta-ketoadipyl-CoA thiolase | -3.1 | |
| Hippuric acid | PP_1378 | alpha-ketoglutarate permease | -1.2 | |
| Hippuric acid | PP_1380 | 3-oxoadipate enol-lactonase 2 | -1.6 | |
| Hippuric acid | PP_2701 | Transcriptional regulator, LysR family | -2.8 | |
| Hippuric acid | PP_2703 | major facilitator transporter | -2.4 | |
| Hippuric acid | PP_2704 | Peptidase, M20/M25/M40 family | -3.7 | |
| Hippuric acid | PP_3716 | HTH-type transcriptional regulator | -1.3 | |
| Hippuric acid | PP_3952 | 3-oxoadipate CoA-transferase subunit A | -2.5 | |
| Hippuric acid | PP_5094 | putative enzyme with PLP binding domain | -1.5 | |
| Hippuric acid | PP_5233 | ammonium transporter AmtB | -2.6 | |
| Hippuric acid | PP_5236 | conserved protein of unknown function | -1.4 | |
| Hydantoin | PP_0409 | Sensory box histidine kinase | +1.2 | |
| Hydantoin | PP_0615 | Branched-chain amino acid ABC transporter, ATP-binding protein | +2.5 | |
| Hydantoin | PP_4035 | putative PydP transporter, NCS1 nucleoside transporter family | -1.1 | |
| L-Alanine | PP_5270 | D-amino-acid:quinone oxidoreductase (deaminating) | -4.3 | Yes |
| L-Alanine | PP_5271 | DNA-binding transcriptional dual regulator, leucine-binding | -3.2 | Yes |
| L-Arginine | PP_2932 | Amidase family protein | -1.9 | |
| L-Arginine | PP_4477 | N-succinylarginine dihydrolase | -5.1 | Yes |
| L-Arginine | PP_4478 | N-succinylglutamate 5-semialdehyde dehydrogenase | -4.2 | Yes |
| L-Arginine | PP_4479 | arginine N-succinyltransferase, subunit beta | -4.3 | Yes |
| L-Arginine | PP_4483 | histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit | -2.3 | Yes |
| L-Arginine | PP_4484 | histidine / lysine / arginine / ornithine ABC transporter - permease subunit | -2.3 | Yes |
| L-Arginine | PP_4485 | histidine / lysine / arginine / ornithine ABC transporter - permease subunit | -2.6 | Yes |
| L-Arginine | PP_4486 | lysine / arginine / ornithine ABC transporter - periplasmic binding protein | -2.4 | Yes |
| L-Asparagine | PP_0495 | type 1 L-asparaginase | -1.4 | Yes |
| L-Cysteine | PP_2435 | cysteine desulfurase | -1.6 | |
| L-Cysteine | PP_4595 | putative LRP-like transcriptional regulator | -1.3 | |
| L-Cysteine | PP_4629 | Sensory box protein | +1.7 | |
| L-Glutamic acid monopotassium salt monohydrate | PP_0137 | glutamate/aspartate-proton DAACS transporter | -2.0 | |
| L-Glutamic acid monopotassium salt monohydrate | PP_1066 | C4-dicarboxylate transport transcriptional regulatory protein | -2.4 | |
| L-Glutamic acid monopotassium salt monohydrate | PP_1067 | Sensor histidine kinase | -2.3 | |
| L-Glutamic acid monopotassium salt monohydrate | PP_1071 | glutamate / aspartate ABC transporter - periplasmic binding protein | -1.7 | |
| L-Histidine | PP_5029 | N-formylglutamate deformylase | -4.0 | Yes |
| L-Histidine | PP_5030 | Imidazolonepropionase | -2.6 | Yes |
| L-Histidine | PP_5036 | probable formiminoglutamate deiminase | -5.4 | Yes |
| L-Isoleucine | PP_2211 | Transcriptional regulator, AraC family | -2.0 | Yes |
| L-Isoleucine | PP_2213 | putative acyl-CoA synthetase | -1.1 | |
| L-Isoleucine | PP_2216 | short-chain acyl-CoA dehydrogenase | -2.5 | Yes |
| L-Isoleucine | PP_4400 | Bkd operon transcriptional regulator | -1.6 | Yes |
| L-Isoleucine | PP_4401 | branched-chain alpha-keto acid dehydrogenase complex, alpha subunit | -1.4 | Yes |
| L-Isoleucine | PP_4402 | branched-chain alpha-keto acid dehydrogenase complex, beta subunit | -1.2 | Yes |
| L-Isoleucine | PP_4403 | Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex | -1.5 | Yes |
| L-Isoleucine | PP_4631 | conserved protein of unknown function | -2.2 | Yes |
| L-Isoleucine | PP_4776 | AsnC family transcriptional regulator | +1.4 | Yes |
| L-Isoleucine | PP_4865 | High-affinity branched-chain amino acid transport system permease protein BraE | -1.1 | |
| L-Isoleucine | PP_4866 | High-affinity branched-chain amino acid transport system permease protein BraD | -1.2 | |
| L-Isoleucine | PP_5345 | Acetyltransferase, GNAT family | -2.8 | |
| L-Leucine | PP_0817 | aminotransferase | -5.5 | |
| L-Leucine | PP_0901 | DNA-binding response regulator | -1.8 | |
| L-Leucine | PP_0902 | integral membrane sensor signal transduction histidine kinase | variable | |
| L-Leucine | PP_1018 | mannose/glucose ABC transporter - ATP binding subunit | -1.4 | |
| L-Leucine | PP_2245 | Transcriptional regulator, Cro/CI family | +1.0 | |
| L-Leucine | PP_2323 | conserved protein of unknown function | -1.6 | |
| L-Leucine | PP_2430 | Transcriptional regulator, AraC family | +3.3 | Yes |
| L-Leucine | PP_3596 | D-lysine oxidase | variable | |
| L-Leucine | PP_3760 | putative methyltransferase | -1.4 | |
| L-Leucine | PP_3761 | Sensor histidine kinase/response regulator | +1.6 | |
| L-Leucine | PP_4065 | methylcrotonyl-CoA carboxylase biotin-containing subunit beta | -2.3 | |
| L-Leucine | PP_4363 | Sensor histidine kinase/response regulator | +1.5 | |
| L-Leucine | PP_4401 | branched-chain alpha-keto acid dehydrogenase complex, alpha subunit | -1.2 | Yes |
| L-Leucine | PP_4402 | branched-chain alpha-keto acid dehydrogenase complex, beta subunit | -1.2 | Yes |
| L-Leucine | PP_4403 | Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex | -1.4 | |
| L-Leucine | PP_4477 | N-succinylarginine dihydrolase | -1.6 | |
| L-Leucine | PP_4683 | transglycosylase/transpeptidase | -1.7 | |
| L-Leucine | PP_4776 | AsnC family transcriptional regulator | +2.7 | |
| L-Leucine | PP_4863 | high-affinity branched-chain amino acid transporter, ATP-binding | -1.3 | Yes |
| L-Leucine | PP_4864 | High-affinity branched-chain amino acid transport ATP-binding protein BraF | -1.3 | Yes |
| L-Leucine | PP_4865 | High-affinity branched-chain amino acid transport system permease protein BraE | -1.2 | Yes |
| L-Leucine | PP_4866 | High-affinity branched-chain amino acid transport system permease protein BraD | -1.2 | Yes |
| L-Leucine | PP_4867 | branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) | -1.4 | |
| L-Leucine | PP_4901 | conserved inner membrane protein | variable | |
| L-Leucine | PP_4947 | proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase | +3.4 | Yes |
| L-Leucine | PP_4959 | diguanylate cyclase | +1.5 | |
| L-Leucine | PP_5094 | putative enzyme with PLP binding domain | -2.1 | |
| L-Leucine | PP_5345 | Acetyltransferase, GNAT family | -2.1 | |
| L-Lysine | PP_0382 | 5-aminopentanamidase | -1.3 | Yes |
| L-Lysine | PP_0383 | Lysine 2-monooxygenase | -3.3 | Yes |
| L-Lysine | PP_0384 | Transcriptional regulator, AsnC family | -3.3 | Yes |
| L-Lysine | PP_1297 | putative amino-acid ABC transporter-binding protein YhdW | -1.6 | Yes |
| L-Lysine | PP_1300 | putative amino acid ABC transporter - ATP-binding subunit | -2.4 | Yes |
| L-Lysine | PP_3592 | Transcriptional regulator, RpiR family | -1.7 | |
| L-Lysine | PP_3593 | L-lysine and D-lysine ABC transporter, substrate-binding component (from data) | -2.2 | |
| L-Lysine | PP_3594 | L-lysine and D-lysine ABC transporter, permease component 1 (from data) | -2.1 | |
| L-Lysine | PP_3595 | L-lysine and D-lysine ABC transporter, permease component 2 (from data) | -2.3 | |
| L-Lysine | PP_3596 | D-lysine oxidase | -2.5 | |
| L-Lysine | PP_3597 | L-lysine and D-lysine ABC transporter, ATPase component (from data) | -1.6 | |
| L-Lysine | PP_5257 | L-pipecolate oxidase | -1.0 | |
| L-Lysine | PP_5260 | 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) | -1.3 | |
| L-Methionine | PP_0145 | Na+/Pi-cotransporter | +1.4 | |
| L-Methionine | PP_0409 | Sensory box histidine kinase | +2.3 | |
| L-Methionine | PP_1308 | methionine gamma-lyase | -1.2 | Yes |
| L-Methionine | PP_2245 | Transcriptional regulator, Cro/CI family | +3.4 | |
| L-Methionine | PP_2389 | conserved protein of unknown function | +2.1 | |
| L-Methionine | PP_3653 | Transporter, LysE family | +6.2 | Yes |
| L-Methionine | PP_3654 | leucine-responsive regulatory protein | +6.1 | Yes |
| L-Methionine | PP_4173 | Sensor histidine kinase/response regulator | +1.6 | |
| L-Methionine | PP_4402 | branched-chain alpha-keto acid dehydrogenase complex, beta subunit | -1.1 | |
| L-Methionine | PP_4403 | Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex | -1.4 | |
| L-Methionine | PP_4595 | putative LRP-like transcriptional regulator | +1.4 | |
| L-Methionine | PP_4629 | Sensory box protein | +2.2 | |
| L-Methionine | PP_4754 | Transcriptional regulator, TetR family | +3.6 | |
| L-Methionine | PP_4947 | proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase | +3.7 | Yes |
| L-Methionine | PP_5233 | ammonium transporter AmtB | -1.9 | |
| L-Ornithine | PP_3776 | putative permease (RarD protein) | -1.7 | |
| L-Ornithine | PP_4478 | N-succinylglutamate 5-semialdehyde dehydrogenase | -2.4 | |
| L-Ornithine | PP_4863 | high-affinity branched-chain amino acid transporter, ATP-binding | -1.6 | |
| L-Ornithine | PP_4864 | High-affinity branched-chain amino acid transport ATP-binding protein BraF | -1.6 | |
| L-Ornithine | PP_4865 | High-affinity branched-chain amino acid transport system permease protein BraE | -1.7 | |
| L-Ornithine | PP_4866 | High-affinity branched-chain amino acid transport system permease protein BraD | -1.6 | |
| L-Ornithine | PP_4867 | branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) | -1.5 | |
| L-Ornithine | PP_4947 | proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase | -5.3 | |
| L-Phenylalanine | PP_1137 | high-affinity branched-chain amino acid transporter, ATP binding | -1.5 | Yes |
| L-Phenylalanine | PP_1139 | branched chain amino acid transporter - permease subunit | -1.4 | Yes |
| L-Phenylalanine | PP_1140 | branched chain amino acid transporter - permease subunit | -1.3 | Yes |
| L-Phenylalanine | PP_1141 | branched-chain amino acids ABC transporter - periplasmic leucine binding subunit | -1.4 | Yes |
| L-Phenylalanine | PP_1620 | 5'(3')-nucleotidase and polyphosphatase | -2.0 | |
| L-Phenylalanine | PP_1866 | Phospho-2-dehydro-3-deoxyheptonate aldolase | -1.6 | |
| L-Phenylalanine | PP_1917 | 4-amino-4-deoxychorismate lyase | -1.9 | |
| L-Phenylalanine | PP_2329 | aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex | -1.9 | |
| L-Phenylalanine | PP_3433 | 4-hydroxyphenylpyruvate dioxygenase | -3.3 | Yes |
| L-Phenylalanine | PP_4489 | sigma-54 dependent transcriptional regulator | -3.3 | Yes |
| L-Phenylalanine | PP_4490 | phenylalanine-4-hydroxylase | -3.0 | Yes |
| L-Phenylalanine | PP_4619 | Maleylacetoacetate isomerase | -1.5 | Yes |
| L-Phenylalanine | PP_5465 | conserved protein of unknown function | -1.3 | |
| L-Pipecolic Acid | PP_2245 | Transcriptional regulator, Cro/CI family | +1.0 | |
| L-Pipecolic Acid | PP_4106 | gamma-aminobutyrate permease | -1.5 | |
| L-Pipecolic Acid | PP_4108 | 2-aminoadipate transaminase (EC 2.6.1.39) (from data) | -2.7 | |
| L-Pipecolic Acid | PP_4493 | D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) | -1.3 | |
| L-Pipecolic Acid | PP_5257 | L-pipecolate oxidase | -2.6 | Yes |
| L-Pipecolic Acid | PP_5258 | L-piperidine-6-carboxylate dehydrogenase | -3.0 | Yes |
| L-Pipecolic Acid | PP_5260 | 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) | -3.7 | |
| L-Proline | PP_4947 | proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase | -5.0 | Yes |
| L-Serine | PP_3144 | L-serine dehydratase | -2.3 | Yes |
| L-Threonine | PP_0321 | low specificity L-threonine aldolase | -3.8 | Yes |
| L-Threonine | PP_0986 | aminomethyltransferase | -2.6 | Yes |
| L-Threonine | PP_0988 | glycine dehydrogenase | -2.8 | Yes |
| L-Threonine | PP_0997 | Sigma-54 dependent transcriptional regulator/sensory box protein | -2.2 | Yes |
| L-Threonine | PP_5033 | Urocanate hydratase | +1.3 | |
| L-Threonine | PP_5034 | Uncharacterized 21.2 kDa protein in hutC 3'region | +1.2 | |
| L-Threonine | PP_5233 | ammonium transporter AmtB | -1.5 | Yes |
| L-Valine | PP_0642 | conserved membrane protein of unknown function | -2.8 | |
| L-Valine | PP_3491 | Enoly-coenzyme A hydratase/isomerase family protein | -1.2 | Yes |
| L-Valine | PP_3492 | isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) | -1.1 | Yes |
| L-Valine | PP_4401 | branched-chain alpha-keto acid dehydrogenase complex, alpha subunit | -1.3 | Yes |
| L-Valine | PP_4402 | branched-chain alpha-keto acid dehydrogenase complex, beta subunit | -1.2 | Yes |
| L-Valine | PP_4403 | Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex | -1.3 | Yes |
| L-Valine | PP_4668 | Transcriptional regulator, LysR family | -1.5 | Yes |
| L-Valine | PP_5149 | threonine deaminase | -1.1 | |
| L-Valine | PP_5188 | putative transcriptional regulator (AsnC/Lrp family) | -3.2 | Yes |
| L-Valine | PP_5452 | protein of unknown function | -1.7 | |
| L-pyroglutamic acid | PP_4575 | Urea amidolyase-related protein | -4.2 | |
| L-pyroglutamic acid | PP_4576 | allophanate hydrolase subunit | -3.8 | |
| L-pyroglutamic acid | PP_4577 | UPF0271 protein PP_4577 | -3.8 | |
| L-pyroglutamic acid | PP_4578 | Major facilitator family transporter | -3.2 | |
| L-pyroglutamic acid | PP_4579 | Transcriptional regulator, LysR family | -3.3 | |
| Nicotinic Acid | PP_0625 | Chaperone protein ClpB | -1.6 | |
| Nicotinic Acid | PP_1292 | Cyclic pyranopterin monophosphate synthase accessory protein | -1.7 | |
| Nicotinic Acid | PP_3828 | Molybdate-binding periplasmic protein | -1.7 | |
| Nicotinic Acid | PP_3829 | Molybdenum transport system permease protein ModB | -1.6 | |
| Nicotinic Acid | PP_3830 | Molybdenum import ATP-binding protein ModC | -1.4 | |
| Nicotinic Acid | PP_3941 | maleamate amidohydrolase | -1.8 | |
| Nicotinic Acid | PP_3942 | maleate isomerase | -1.7 | |
| Nicotinic Acid | PP_3943 | N-formylmaleamate deformylase | -1.6 | |
| Nicotinic Acid | PP_3944 | 6-hydroxynicotinate 3-monooxygenase | -1.5 | |
| Nicotinic Acid | PP_3945 | 2,5-dihydroxypyridine 5,6-dioxygenase | -1.6 | |
| Nicotinic Acid | PP_3947 | nicotinate dehydrogenase subunit A | -1.3 | |
| Nicotinic Acid | PP_3948 | nicotinate dehydrogenase subunit B (EC 1.17.2.1) (from data) | -1.4 | |
| Propandiamine | PP_0066 | Ribosomal RNA small subunit methyltransferase B | -2.1 | |
| Propandiamine | PP_0213 | succinate-semialdehyde dehydrogenase (NADP+) | -5.9 | |
| Propandiamine | PP_0247 | Osmolarity sensor protein EnvZ | -2.4 | |
| Propandiamine | PP_0266 | Agmatine deiminase | -5.3 | |
| Propandiamine | PP_0282 | L-arginine ABC transporter - periplasmic binding subunit | +1.5 | |
| Propandiamine | PP_0384 | Transcriptional regulator, AsnC family | +1.2 | |
| Propandiamine | PP_0412 | Polyamine ABC transporter, periplasmic polyamine-binding protein | +1.3 | |
| Propandiamine | PP_0567 | Biosynthetic arginine decarboxylase | -5.6 | |
| Propandiamine | PP_0595 | Transcriptional regulator, LysR family | -5.1 | |
| Propandiamine | PP_0596 | Omega-amino acid--pyruvate aminotransferase | -6.3 | |
| Propandiamine | PP_0597 | methylmalonate-semialdehyde dehydrogenase | -5.3 | |
| Propandiamine | PP_0697 | ribosomal-protein-S18-alanine N-acetyltransferase | -3.6 | |
| Propandiamine | PP_0795 | fructose PTS permease - IIBC component | -1.7 | |
| Propandiamine | PP_1013 | Sensor histidine kinase | -3.6 | |
| Propandiamine | PP_1015 | mannose/glucose ABC transporter, glucose-binding periplasmic protein | -4.5 | |
| Propandiamine | PP_1016 | mannose/glucose ABC transporter, permease protein | -3.7 | |
| Propandiamine | PP_1017 | mannose/glucose ABC transporter, permease protein | -3.9 | |
| Propandiamine | PP_1018 | mannose/glucose ABC transporter - ATP binding subunit | -2.8 | |
| Propandiamine | PP_1185 | Outer membrane protein H1 | +2.4 | |
| Propandiamine | PP_1234 | putative permease | -1.3 | |
| Propandiamine | PP_1346 | Glutamate N-acetyltransferase/Amino-acid acetyltransferase | -1.7 | |
| Propandiamine | PP_1440 | tRNA (mo5U34)-methyltransferase | -2.8 | |
| Propandiamine | PP_1641 | tRNA 2-thiocytidine biosynthesis protein TtcA | -1.4 | |
| Propandiamine | PP_1758 | putative sulfurtransferase containing rhodanese-like domain | -3.0 | |
| Propandiamine | PP_1842 | Glutamine amidotransferase, class I | -5.0 | |
| Propandiamine | PP_1844 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | -1.3 | |
| Propandiamine | PP_1917 | 4-amino-4-deoxychorismate lyase | -2.6 | |
| Propandiamine | PP_2181 | Transcriptional regulator, Cro/CI family | -5.5 | |
| Propandiamine | PP_2223 | conserved protein of unknown function | -1.2 | |
| Propandiamine | PP_2448 | Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) | +1.3 | |
| Propandiamine | PP_2543 | gamma-aminobutyrate permease | +1.6 | |
| Propandiamine | PP_2657 | phosphate ABC transporter | -1.1 | |
| Propandiamine | PP_2884 | XRE family transcriptional regulator | +3.4 | |
| Propandiamine | PP_2892 | conserved exported protein of unknown function | -1.2 | |
| Propandiamine | PP_2893 | conserved exported protein of unknown function | -1.4 | |
| Propandiamine | PP_2932 | Amidase family protein | -6.1 | |
| Propandiamine | PP_3415 | Transcriptional regulator, LacI family | +5.1 | |
| Propandiamine | PP_3598 | gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data) | -1.8 | |
| Propandiamine | PP_3731 | Transcriptional regulator, TetR family | -2.1 | |
| Propandiamine | PP_3957 | choline/carnitine/betaine transporter BetTC | +2.5 | |
| Propandiamine | PP_3990 | substrate or modulator of FtsH-mediated proteolysis | -1.5 | |
| Propandiamine | PP_4184 | branched chain amino acid transporter | +1.2 | |
| Propandiamine | PP_4304 | Cation transporter, VIC family | -1.5 | |
| Propandiamine | PP_4479 | arginine N-succinyltransferase, subunit beta | +2.7 | |
| Propandiamine | PP_4487 | acetyl-CoA synthetase | -2.2 | |
| Propandiamine | PP_4547 | putative Glutamine synthetase | -5.9 | |
| Propandiamine | PP_4548 | putative Oxidoreductase | -5.7 | |
| Propandiamine | PP_4654 | tRNA/tmRNA (uracil-C(5))-methyltransferase | +1.2 | |
| Propandiamine | PP_4774 | divalent cation efflux transporter | -1.3 | |
| Propandiamine | PP_4900 | epoxyqueuosine reductase | -1.2 | |
| Propandiamine | PP_4947 | proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase | -2.2 | |
| Propandiamine | PP_5055 | Sulfurtransferase | -3.6 | |
| Propandiamine | PP_5096 | putative factor involved in shape determination | -5.0 | |
| Propandiamine | PP_5180 | spermidine/putrescine ABC transporter - periplasmic subunit | -1.6 | |
| Propandiamine | PP_5184 | glutamylpolyamine synthetase | -4.7 | |
| Propandiamine | PP_5212 | Oxidoreductase, iron-sulfur-binding | -4.9 | |
| Propandiamine | PP_5236 | conserved protein of unknown function | +1.6 | |
| Propandiamine | PP_5262 | Probable multidrug resistance protein NorM | -5.0 | |
| Propandiamine | PP_5268 | DNA-binding transcriptional repressor PuuR-putrescine | +2.1 | |
| Propandiamine | PP_5271 | DNA-binding transcriptional dual regulator, leucine-binding | -2.3 | |
| Propandiamine | PP_5273 | putative Oxidoreductase | +1.1 | |
| Propandiamine | PP_5278 | 4-guanidinobutyraldehyde dehydrogenase | -3.9 | |
| Propandiamine | PP_5719 | choline-responsive transcriptional repressor BetI | -4.6 | |
| Putrescine Dihydrochloride | PP_2448 | Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) | -3.1 | Yes |
| Putrescine Dihydrochloride | PP_3598 | gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data) | -4.0 | |
| Putrescine Dihydrochloride | PP_5184 | glutamylpolyamine synthetase | -3.2 | Yes |
| Putrescine Dihydrochloride | PP_5278 | 4-guanidinobutyraldehyde dehydrogenase | -3.2 | Yes |
| Sodium nitrate | PP_1292 | Cyclic pyranopterin monophosphate synthase accessory protein | -3.6 | Yes |
| Sodium nitrate | PP_1294 | molybdopterin synthase large subunit | -3.8 | Yes |
| Sodium nitrate | PP_1703 | assimilatory nitrate reductase/sulfite reductase | -3.1 | Yes |
| Sodium nitrate | PP_1705 | nitrite reductase [NAD(P)H] large subunit | -3.9 | Yes |
| Sodium nitrate | PP_1706 | Nitrite reductase | -4.7 | Yes |
| Sodium nitrate | PP_2092 | Nitrate transporter | -2.8 | Yes |
| Sodium nitrate | PP_2093 | NasT | -3.3 | Yes |
| Sodium nitrate | PP_2123 | molybdenum::molybdopterin ligase | -3.7 | Yes |
| Sodium nitrate | PP_3828 | Molybdate-binding periplasmic protein | variable | Yes |
| Sodium nitrate | PP_3829 | Molybdenum transport system permease protein ModB | -3.1 | Yes |
| Sodium nitrate | PP_3830 | Molybdenum import ATP-binding protein ModC | variable | |
| Sodium nitrate | PP_4597 | Cyclic pyranopterin monophosphate synthase | -2.7 | Yes |
| Sodium nitrite | PP_1408 | (R)-3-hydroxydecanoyl-ACP:CoA transacylase | variable | |
| Sodium nitrite | PP_1444 | quinoprotein glucose dehydrogenase | -1.6 | |
| Sodium nitrite | PP_1705 | nitrite reductase [NAD(P)H] large subunit | -3.1 | Yes |
| Sodium nitrite | PP_1706 | Nitrite reductase | -3.6 | |
| Sodium nitrite | PP_2093 | NasT | -2.9 | Yes |
| Sodium nitrite | PP_2349 | nitrite transporter, HPP family (from data) | variable | |
| Sodium nitrite | PP_2350 | LysR family transcriptional regulator | variable | Yes |
| Sodium nitrite | PP_3377 | 2-ketogluconate transporter, putative | variable | |
| Uracil | PP_0595 | Transcriptional regulator, LysR family | -2.1 | |
| Uracil | PP_0596 | Omega-amino acid--pyruvate aminotransferase | -6.7 | |
| Uracil | PP_0597 | methylmalonate-semialdehyde dehydrogenase | -1.2 | |
| Uracil | PP_3377 | 2-ketogluconate transporter, putative | -1.2 | |
| Uracil | PP_4036 | D-hydantoinase/dihydropyrimidinase | -3.0 | |
| Uracil | PP_4037 | NADP-dependent dihydropyrimidine dehydrogenase subunit | -3.3 | |
| Uracil | PP_4038 | Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) | -4.1 | |
| Uracil | PP_5233 | ammonium transporter AmtB | -1.4 | |
| e-Amino-N-Caproic Acid | PP_0409 | Sensory box histidine kinase | +1.6 | |
| e-Amino-N-Caproic Acid | PP_2884 | XRE family transcriptional regulator | +4.7 | |
| e-Amino-N-Caproic Acid | PP_3835 | Sensory box histidine kinase | +1.3 | |
| e-Amino-N-Caproic Acid | PP_4629 | Sensory box protein | +1.5 | |
| e-Amino-N-Caproic Acid | PP_5178 | spermidine/putrescine ABC transporter - inner membrane subunit | -1.3 | |
| e-Amino-N-Caproic Acid | PP_5179 | spermidine/putrescine ABC transporter - ATP binding subunit | -1.4 | |
| spermidine | PP_0247 | Osmolarity sensor protein EnvZ | -1.8 | |
| spermidine | PP_0595 | Transcriptional regulator, LysR family | -1.4 | |
| spermidine | PP_0596 | Omega-amino acid--pyruvate aminotransferase | -3.4 | |
| spermidine | PP_0597 | methylmalonate-semialdehyde dehydrogenase | -2.6 | |
| spermidine | PP_2226 | putative K(+)/H(+) antiporter subunit F | -1.3 | |
| spermidine | PP_2227 | putative Multicomponent potassium-proton antiporter, subunit E | -1.2 | |
| spermidine | PP_2228 | putative K(+)/H(+) antiporter subunit D | -1.2 | |
| spermidine | PP_3146 | putative Oxidoreductase | -4.6 | |
| spermidine | PP_3147 | putrescine-binding periplasmic protein | -2.6 | |
| spermidine | PP_3148 | putative Glutamine synthetase | -3.2 | |
| spermidine | PP_3149 | Transcriptional regulator, AraC family | -1.5 | |
| spermidine | PP_3990 | substrate or modulator of FtsH-mediated proteolysis | -1.4 | |
| spermidine | PP_4304 | Cation transporter, VIC family | -5.3 | |
| spermidine | PP_5055 | Sulfurtransferase | -2.4 | |
| spermidine | PP_5096 | putative factor involved in shape determination | -5.2 | |
| spermidine | PP_5177 | spermidine/putrescine ABC transporter - permease subunit | -2.3 | |
| spermidine | PP_5178 | spermidine/putrescine ABC transporter - inner membrane subunit | -2.2 | Yes |
| spermidine | PP_5179 | spermidine/putrescine ABC transporter - ATP binding subunit | -2.5 | Yes |
| spermidine | PP_5181 | spermidine/putrescine ABC transporter - periplasmic subunit | -1.7 | |
| spermidine | PP_5278 | 4-guanidinobutyraldehyde dehydrogenase | -3.2 | |