Specific Phenotypes for Pseudomonas putida KT2440 in nitrogen source experiments

Condition Gene Description Fitness Cons.
1,6-Hexanediamine PP_2180 polyamine:pyruvate transaminase -1.3  
1,6-Hexanediamine PP_2884 XRE family transcriptional regulator +3.4  
1,6-Hexanediamine PP_3377 2-ketogluconate transporter, putative -1.3  
1,6-Hexanediamine PP_4762 Acyl-CoA thioesterase II -1.8  
1,6-Hexanediamine PP_5177 spermidine/putrescine ABC transporter - permease subunit -3.5  
1,6-Hexanediamine PP_5178 spermidine/putrescine ABC transporter - inner membrane subunit -3.2  
1,6-Hexanediamine PP_5179 spermidine/putrescine ABC transporter - ATP binding subunit -3.4  
1,6-Hexanediamine PP_5181 spermidine/putrescine ABC transporter - periplasmic subunit -2.9  
1,6-Hexanediamine PP_5182 polyamine:pyruvate transaminase -1.8  
1,6-Hexanediamine PP_5233 ammonium transporter AmtB -2.2  
1,6-Hexanediamine PP_5278 4-guanidinobutyraldehyde dehydrogenase -2.0  
2,6-diaminopimelic acid PP_0225 sulfur compound ABC transporter - ATP-binding subunit -1.3  
2,6-diaminopimelic acid PP_0226 sulfur compound ABC transporter - permease subunit -1.8  
2,6-diaminopimelic acid PP_0227 periplasmic cystine-binding protein -1.9  
2,6-diaminopimelic acid PP_0383 Lysine 2-monooxygenase -1.6  
2,6-diaminopimelic acid PP_0409 Sensory box histidine kinase +4.6  
2,6-diaminopimelic acid PP_1408 (R)-3-hydroxydecanoyl-ACP:CoA transacylase -2.2  
2,6-diaminopimelic acid PP_3835 Sensory box histidine kinase +1.9  
2,6-diaminopimelic acid PP_4172 conserved exported protein of unknown function +1.8  
2,6-diaminopimelic acid PP_4173 Sensor histidine kinase/response regulator +2.0  
2,6-diaminopimelic acid PP_4363 Sensor histidine kinase/response regulator -1.3  
2,6-diaminopimelic acid PP_4629 Sensory box protein +2.7  
2,6-diaminopimelic acid PP_5041 glycogen phosphorylase variable  
2,6-diaminopimelic acid PP_5233 ammonium transporter AmtB -1.9  
2-Azetidinone PP_0247 Osmolarity sensor protein EnvZ +1.1  
2-Azetidinone PP_0409 Sensory box histidine kinase +1.7  
2-Azetidinone PP_0595 Transcriptional regulator, LysR family -3.3  
2-Azetidinone PP_0597 methylmalonate-semialdehyde dehydrogenase -4.0  
2-Azetidinone PP_1408 (R)-3-hydroxydecanoyl-ACP:CoA transacylase +1.1  
2-Azetidinone PP_2245 Transcriptional regulator, Cro/CI family +4.1  
2-Azetidinone PP_2919 Transcriptional regulator, LysR family -3.2  
2-Azetidinone PP_2920 putative nitrogen-containing compound degradation enzyme -4.4  
2-Azetidinone PP_2921 conserved protein of unknown function -4.6  
2-Azetidinone PP_3377 2-ketogluconate transporter, putative -1.1  
2-Azetidinone PP_3761 Sensor histidine kinase/response regulator +1.4  
2-Azetidinone PP_4629 Sensory box protein +1.9  
2-Azetidinone PP_4852 Transcriptional regulator, AraC family -1.6  
2-Azetidinone PP_4959 diguanylate cyclase +1.3  
2-Azetidinone PP_5041 glycogen phosphorylase +1.2  
2-Azetidinone PP_5233 ammonium transporter AmtB -2.3  
2-Azetidinone PP_5465 conserved protein of unknown function -1.0  
2-Piperidinone PP_2910 L-2-hydroxyglutarate oxidase -1.2  
2-Piperidinone PP_3514 5-oxoprolinase B -3.8  
2-Piperidinone PP_3515 5-oxoprolinase A -4.1  
2-Piperidinone PP_3516 Transcriptional regulator, AraC family -4.7  
2-Piperidinone PP_3776 putative permease (RarD protein) -1.4  
3,5-Dinitrosalicylic acid PP_1185 Outer membrane protein H1 -1.6  
3,5-Dinitrosalicylic acid PP_1206 basic-amino-acid specific porin OprD -1.7  
3,5-Dinitrosalicylic acid PP_3453 putative Sensor protein RstB +4.7  
3-aminobutyric acid PP_0409 Sensory box histidine kinase +1.6  
3-aminobutyric acid PP_0596 Omega-amino acid--pyruvate aminotransferase -5.4 Yes
3-aminobutyric acid PP_0597 methylmalonate-semialdehyde dehydrogenase +2.9  
3-aminobutyric acid PP_1138 branched chain amino acid transporter - ATP binding subunit -1.6  
3-aminobutyric acid PP_1139 branched chain amino acid transporter - permease subunit -1.1  
3-aminobutyric acid PP_2245 Transcriptional regulator, Cro/CI family -2.1  
3-aminobutyric acid PP_3189 cytosine deaminase / isoguanine deaminase -1.2  
3-aminobutyric acid PP_4036 D-hydantoinase/dihydropyrimidinase -1.8  
3-aminobutyric acid PP_4037 NADP-dependent dihydropyrimidine dehydrogenase subunit -1.7  
3-aminobutyric acid PP_4038 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) -2.3  
3-aminobutyric acid PP_4754 Transcriptional regulator, TetR family -4.6  
3-aminobutyric acid PP_5094 putative enzyme with PLP binding domain -1.4  
4-Guanidinobutyric acid PP_4523 putative Agmatinase -1.2  
5-Aminovaleric acid PP_2543 gamma-aminobutyrate permease -1.2  
5-Aminovaleric acid PP_2909 glutarate hydroxylase (from data) -1.4  
5-Aminovaleric acid PP_2910 L-2-hydroxyglutarate oxidase -2.2  
Adenine hydrochloride hydrate PP_2250 Transcriptional regulator, LysR family -2.4  
Adenine hydrochloride hydrate PP_2251 conserved membrane protein of unknown function -2.3  
Adenine hydrochloride hydrate PP_3530 putative S-ureidoglycine aminohydrolase -3.0  
Adenine hydrochloride hydrate PP_4286 allantoinase -1.4 Yes
Adenine hydrochloride hydrate PP_4287 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase -2.9 Yes
Ammonium chloride PP_0237 aliphatic sulfonate ABC transporter - periplasmic binding protein / transport of isethionate -1.7  
Ammonium chloride PP_0238 alkanesulfonate monooxygenase -1.7 Yes
Ammonium chloride PP_0380 Coenzyme PQQ synthesis protein A -1.6  
Ammonium chloride PP_0586 cadmium translocating P-type ATPase variable  
Ammonium chloride PP_0793 Phosphotransferase system, fructose-specific EI/HPr/EIIA components -1.9  
Ammonium chloride PP_0795 fructose PTS permease - IIBC component -1.7  
Ammonium chloride PP_1013 Sensor histidine kinase -1.4  
Ammonium chloride PP_1016 mannose/glucose ABC transporter, permease protein -1.7  
Ammonium chloride PP_1018 mannose/glucose ABC transporter - ATP binding subunit -1.9  
Ammonium chloride PP_1444 quinoprotein glucose dehydrogenase -1.8  
Ammonium chloride PP_1445 carbohydrate-selective porin +1.5  
Ammonium chloride PP_1460 putative Membrane protein variable  
Ammonium chloride PP_3415 Transcriptional regulator, LacI family +1.7  
Ammonium chloride PP_3819 glutathione reductase (NADPH) -2.4  
Ammonium chloride PP_4147 microcin C transporter - periplasmic binding protein -1.1  
Ammonium chloride PP_4148 putative inner membrane ABC transporter permease protein -1.3  
Ammonium chloride PP_4150 microcin C transporter - ATP binding subunit -1.5  
Ammonium chloride PP_5380 copper resistance protein A variable  
Beta-alanine PP_0213 succinate-semialdehyde dehydrogenase (NADP+) -2.8  
Beta-alanine PP_0410 DNA-binding response regulator UhpA -1.4  
Beta-alanine PP_0411 Polyamine ABC transporter, ATP-binding protein -1.3  
Beta-alanine PP_0412 Polyamine ABC transporter, periplasmic polyamine-binding protein -1.3  
Beta-alanine PP_0414 Polyamine ABC transporter, permease protein -1.5  
Beta-alanine PP_0595 Transcriptional regulator, LysR family -7.9  
Beta-alanine PP_0596 Omega-amino acid--pyruvate aminotransferase -8.0 Yes
Beta-alanine PP_0597 methylmalonate-semialdehyde dehydrogenase -6.0  
Beta-alanine PP_1059 Uncharacterized amino acid permease YtnA +1.2  
Beta-alanine PP_1789 Hydrolase, haloacid dehalogenase-like family -1.4  
Beta-alanine PP_2332 conserved exported protein of unknown function +1.2  
Beta-alanine PP_2908 DNA-binding transcriptional repressor -1.8  
Beta-alanine PP_3436 chloramphenicol-sensitive protein -2.5  
Beta-alanine PP_4477 N-succinylarginine dihydrolase -1.6  
Beta-alanine PP_4840 D-alanine, beta-alanine, D-serine, glycine permease +1.1  
Beta-alanine PP_4900 epoxyqueuosine reductase -1.2  
Beta-alanine PP_5233 ammonium transporter AmtB -1.5  
Beta-alanine PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) -4.9 Yes
Betaine PP_0298 AraC-family transcriptional regulator -1.1 Yes
Betaine PP_0308 putative dipeptidase -2.4  
Betaine PP_0309 conserved protein of unknown function -1.9  
Betaine PP_0310 putative dimethylglycine dehydrogenase subunit -2.2  
Betaine PP_0311 putative dimethylglycine dehydrogenase subunit -2.2  
Betaine PP_0312 electron transfer flavoprotein, alpha subunit -1.7  
Betaine PP_0315 putative glycine-betaine dioxygenase subunit -1.2 Yes
Betaine PP_0316 putative glycine-betaine dioxygenase subunit -1.1 Yes
Betaine PP_0322 serine hydroxymethyltransferase -2.7  
Betaine PP_0323 sarcosine oxidase subunit beta -2.6  
Betaine PP_0324 sarcosine oxidase subunit delta -3.0 Yes
Betaine PP_0325 sarcosine oxidase subunit alpha -2.9 Yes
Betaine PP_0326 sarcosine oxidase subunit gamma -2.8  
Betaine PP_1615 Transcriptional regulator, LysR family -1.9  
Betaine PP_1616 formaldehyde dehydrogenase, glutathione-dependent -2.2 Yes
Butyrolactam PP_1968 TetR family transcriptional regulator -1.9  
Butyrolactam PP_2919 Transcriptional regulator, LysR family -4.6  
Butyrolactam PP_2920 putative nitrogen-containing compound degradation enzyme -4.7  
Butyrolactam PP_2921 conserved protein of unknown function -4.4  
Butyrolactam PP_2922 Urea amidolyase-related protein -5.1  
Cadaverine PP_2180 polyamine:pyruvate transaminase -1.3  
Cadaverine PP_2884 XRE family transcriptional regulator +1.7  
Cadaverine PP_5177 spermidine/putrescine ABC transporter - permease subunit -2.9  
Cadaverine PP_5178 spermidine/putrescine ABC transporter - inner membrane subunit -2.7  
Cadaverine PP_5179 spermidine/putrescine ABC transporter - ATP binding subunit -2.8  
Cadaverine PP_5181 spermidine/putrescine ABC transporter - periplasmic subunit -2.4  
Cadaverine PP_5278 4-guanidinobutyraldehyde dehydrogenase -3.1  
Caprolactam PP_0247 Osmolarity sensor protein EnvZ -1.3  
Caprolactam PP_0409 Sensory box histidine kinase +1.4  
Caprolactam PP_2181 Transcriptional regulator, Cro/CI family +7.5  
Caprolactam PP_2884 XRE family transcriptional regulator +5.1  
Caprolactam PP_3377 2-ketogluconate transporter, putative -1.6  
Caprolactam PP_3514 5-oxoprolinase B +1.3  
Caprolactam PP_3515 5-oxoprolinase A +1.2  
Caprolactam PP_3516 Transcriptional regulator, AraC family +1.3  
Caprolactam PP_4398 Major facilitator family transporter +3.0  
Caprolactam PP_4422 succinate-semialdehyde dehydrogenase (NADP+) +3.5  
Caprolactam PP_4762 Acyl-CoA thioesterase II -2.3  
Caprolactam PP_5072 efflux transporter -2.0  
Caprolactam PP_5268 DNA-binding transcriptional repressor PuuR-putrescine +2.8  
Carnitine Hydrochloride PP_0294 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) -3.1 Yes
Carnitine Hydrochloride PP_0295 choline / betaine / carnitine ABC transporter - membrane subunit -3.2 Yes
Carnitine Hydrochloride PP_0296 choline / betaine / carnitine ABC transporter - substrate binding protein -1.7 Yes
Carnitine Hydrochloride PP_0298 AraC-family transcriptional regulator -3.6 Yes
Carnitine Hydrochloride PP_0301 betainyl-CoA thiolase -3.4 Yes
Carnitine Hydrochloride PP_0302 L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) -2.9 Yes
Carnitine Hydrochloride PP_0303 dehydrocarnitine cleavage enzyme -3.4 Yes
Carnitine Hydrochloride PP_0304 Carnitine uptake ABC transporter, periplasmic component -2.8 Yes
Carnitine Hydrochloride PP_0305 HTH-type transcriptional regulator CdhR -2.6 Yes
Carnitine Hydrochloride PP_0308 putative dipeptidase -3.3 Yes
Carnitine Hydrochloride PP_0309 conserved protein of unknown function -3.0 Yes
Carnitine Hydrochloride PP_0310 putative dimethylglycine dehydrogenase subunit -3.7 Yes
Carnitine Hydrochloride PP_0311 putative dimethylglycine dehydrogenase subunit -3.2 Yes
Carnitine Hydrochloride PP_0312 electron transfer flavoprotein, alpha subunit -3.6 Yes
Carnitine Hydrochloride PP_0315 putative glycine-betaine dioxygenase subunit -3.2 Yes
Carnitine Hydrochloride PP_0316 putative glycine-betaine dioxygenase subunit -3.1 Yes
Carnitine Hydrochloride PP_0322 serine hydroxymethyltransferase -2.7 Yes
Carnitine Hydrochloride PP_0323 sarcosine oxidase subunit beta -4.1 Yes
Carnitine Hydrochloride PP_0324 sarcosine oxidase subunit delta -3.6 Yes
Carnitine Hydrochloride PP_0325 sarcosine oxidase subunit alpha -3.5 Yes
Carnitine Hydrochloride PP_0326 sarcosine oxidase subunit gamma -3.6  
Carnitine Hydrochloride PP_0901 DNA-binding response regulator -1.4  
Carnitine Hydrochloride PP_0902 integral membrane sensor signal transduction histidine kinase -1.6  
Carnitine Hydrochloride PP_5719 choline-responsive transcriptional repressor BetI +1.3  
Choline chloride PP_0294 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) -1.5  
Choline chloride PP_0295 choline / betaine / carnitine ABC transporter - membrane subunit -1.2  
Choline chloride PP_0298 AraC-family transcriptional regulator -1.4 Yes
Choline chloride PP_0308 putative dipeptidase -2.4  
Choline chloride PP_0309 conserved protein of unknown function -2.3  
Choline chloride PP_0310 putative dimethylglycine dehydrogenase subunit -2.1  
Choline chloride PP_0311 putative dimethylglycine dehydrogenase subunit -2.4  
Choline chloride PP_0312 electron transfer flavoprotein, alpha subunit -2.3  
Choline chloride PP_0315 putative glycine-betaine dioxygenase subunit -1.9 Yes
Choline chloride PP_0316 putative glycine-betaine dioxygenase subunit -1.8 Yes
Choline chloride PP_0322 serine hydroxymethyltransferase -2.4  
Choline chloride PP_0323 sarcosine oxidase subunit beta -2.3  
Choline chloride PP_0324 sarcosine oxidase subunit delta -2.5  
Choline chloride PP_0325 sarcosine oxidase subunit alpha -2.5  
Choline chloride PP_0326 sarcosine oxidase subunit gamma -2.4  
Choline chloride PP_5064 choline dehydrogenase -1.2 Yes
Cytosine PP_3187 Cytosine transporter -1.2 Yes
Cytosine PP_3189 cytosine deaminase / isoguanine deaminase -1.4 Yes
D-2-Aminobutyric acid PP_0163 putative transcriptional regulator +1.1  
D-2-Aminobutyric acid PP_0298 AraC-family transcriptional regulator +1.6  
D-2-Aminobutyric acid PP_0310 putative dimethylglycine dehydrogenase subunit -2.5  
D-2-Aminobutyric acid PP_0311 putative dimethylglycine dehydrogenase subunit -2.9  
D-2-Aminobutyric acid PP_0312 electron transfer flavoprotein, alpha subunit -3.4  
D-2-Aminobutyric acid PP_0353 Exonuclease -1.5  
D-2-Aminobutyric acid PP_0400 CO2+/MG2+ efflux protein -1.8  
D-2-Aminobutyric acid PP_0597 methylmalonate-semialdehyde dehydrogenase -3.0  
D-2-Aminobutyric acid PP_0672 Sensory box protein -1.5  
D-2-Aminobutyric acid PP_0680 ATP-dependent protease-like protein -1.5  
D-2-Aminobutyric acid PP_0887 Sensor histidine kinase -2.1  
D-2-Aminobutyric acid PP_0973 Nucleoid-associated protein PP_0973 +2.0  
D-2-Aminobutyric acid PP_0987 L-serine dehydratase +1.2  
D-2-Aminobutyric acid PP_1009 glyceraldehyde-3-phosphate dehydrogenase -2.0  
D-2-Aminobutyric acid PP_1013 Sensor histidine kinase -4.7  
D-2-Aminobutyric acid PP_1014 aldose-ketose isomerase -2.0  
D-2-Aminobutyric acid PP_1015 mannose/glucose ABC transporter, glucose-binding periplasmic protein -3.6  
D-2-Aminobutyric acid PP_1016 mannose/glucose ABC transporter, permease protein -3.5  
D-2-Aminobutyric acid PP_1017 mannose/glucose ABC transporter, permease protein -2.9  
D-2-Aminobutyric acid PP_1018 mannose/glucose ABC transporter - ATP binding subunit -3.3  
D-2-Aminobutyric acid PP_1021 DNA-binding transcriptional regulator +3.0  
D-2-Aminobutyric acid PP_1059 Uncharacterized amino acid permease YtnA +2.3  
D-2-Aminobutyric acid PP_1137 high-affinity branched-chain amino acid transporter, ATP binding +2.1  
D-2-Aminobutyric acid PP_1138 branched chain amino acid transporter - ATP binding subunit +2.4  
D-2-Aminobutyric acid PP_1139 branched chain amino acid transporter - permease subunit +1.8  
D-2-Aminobutyric acid PP_1140 branched chain amino acid transporter - permease subunit +1.8  
D-2-Aminobutyric acid PP_1141 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit +1.6  
D-2-Aminobutyric acid PP_1301 quality control serine endoprotease DegS -2.6  
D-2-Aminobutyric acid PP_1505 Phosphoenolpyruvate carboxylase -2.1  
D-2-Aminobutyric acid PP_1917 4-amino-4-deoxychorismate lyase -2.2  
D-2-Aminobutyric acid PP_2019 adhesin-associated MmpL efflux pump (from data) +1.3  
D-2-Aminobutyric acid PP_2211 Transcriptional regulator, AraC family -3.8  
D-2-Aminobutyric acid PP_2213 putative acyl-CoA synthetase -1.7  
D-2-Aminobutyric acid PP_2216 short-chain acyl-CoA dehydrogenase -3.1  
D-2-Aminobutyric acid PP_2245 Transcriptional regulator, Cro/CI family -5.7  
D-2-Aminobutyric acid PP_2326 Universal stress protein -1.8  
D-2-Aminobutyric acid PP_2389 conserved protein of unknown function +2.3  
D-2-Aminobutyric acid PP_2462 conserved protein of unknown function +1.9  
D-2-Aminobutyric acid PP_2683 putative sensory box histidine kinase/response regulator +1.8  
D-2-Aminobutyric acid PP_3377 2-ketogluconate transporter, putative -1.5  
D-2-Aminobutyric acid PP_3415 Transcriptional regulator, LacI family +6.2  
D-2-Aminobutyric acid PP_3596 D-lysine oxidase -2.6  
D-2-Aminobutyric acid PP_3653 Transporter, LysE family -4.9  
D-2-Aminobutyric acid PP_3957 choline/carnitine/betaine transporter BetTC +1.7  
D-2-Aminobutyric acid PP_4011 isocitrate dehydrogenase, NADP(+)-specific +1.1  
D-2-Aminobutyric acid PP_4179 Chaperone protein HtpG +1.3  
D-2-Aminobutyric acid PP_4401 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit -4.7  
D-2-Aminobutyric acid PP_4402 branched-chain alpha-keto acid dehydrogenase complex, beta subunit -4.7  
D-2-Aminobutyric acid PP_4403 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex -5.0  
D-2-Aminobutyric acid PP_4404 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex -4.1  
D-2-Aminobutyric acid PP_4487 acetyl-CoA synthetase -1.9  
D-2-Aminobutyric acid PP_4549 long-chain-fatty-acid/CoA ligase +1.7  
D-2-Aminobutyric acid PP_4640 conserved protein of unknown function +2.8  
D-2-Aminobutyric acid PP_4641 putative transporter +3.1  
D-2-Aminobutyric acid PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase -2.8  
D-2-Aminobutyric acid PP_4754 Transcriptional regulator, TetR family -4.6  
D-2-Aminobutyric acid PP_4756 gamma-aminobutyrate permease +1.2  
D-2-Aminobutyric acid PP_4776 AsnC family transcriptional regulator +6.1  
D-2-Aminobutyric acid PP_4840 D-alanine, beta-alanine, D-serine, glycine permease +1.7  
D-2-Aminobutyric acid PP_4850 conserved membrane protein of unknown function +1.6  
D-2-Aminobutyric acid PP_4864 High-affinity branched-chain amino acid transport ATP-binding protein BraF +1.6  
D-2-Aminobutyric acid PP_4865 High-affinity branched-chain amino acid transport system permease protein BraE +1.3  
D-2-Aminobutyric acid PP_4866 High-affinity branched-chain amino acid transport system permease protein BraD +1.4  
D-2-Aminobutyric acid PP_4867 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) +1.4  
D-2-Aminobutyric acid PP_5103 tRNA (guanine-N(7)-)-methyltransferase +1.2  
D-2-Aminobutyric acid PP_5183 glutamylpolyamine synthetase -2.8  
D-2-Aminobutyric acid PP_5233 ammonium transporter AmtB -2.3  
D-2-Aminobutyric acid PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) -4.7  
D-2-Aminobutyric acid PP_5283 periplasmic dipeptide transport protein +1.4  
D-2-Aminobutyric acid PP_5426 conserved protein of unknown function -2.0  
D-Alanine PP_2245 Transcriptional regulator, Cro/CI family +1.3  
D-Alanine PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase +1.7  
D-Alanine PP_5271 DNA-binding transcriptional dual regulator, leucine-binding -2.1 Yes
D-Glucose PP_0211 conserved protein of unknown function variable  
D-Glucose PP_1202 putative enzyme involved in modification of phospholipids variable  
D-Glucose PP_1703 assimilatory nitrate reductase/sulfite reductase variable Yes
D-Glucose PP_1705 nitrite reductase [NAD(P)H] large subunit variable Yes
D-Glucose PP_1706 Nitrite reductase variable  
D-Glucose PP_2092 Nitrate transporter variable Yes
D-Glucose PP_2093 NasT variable Yes
D-Glucose PP_2094 putative Nitrate-binding protein NasS -3.4 Yes
D-Glucose PP_2123 molybdenum::molybdopterin ligase variable  
D-Glucose PP_2349 nitrite transporter, HPP family (from data) variable  
D-Lysine PP_3591 Delta 1-piperideine-2-carboxylate reductase -2.7  
D-Lysine PP_3592 Transcriptional regulator, RpiR family -4.8  
D-Lysine PP_3593 L-lysine and D-lysine ABC transporter, substrate-binding component (from data) -5.5  
D-Lysine PP_3594 L-lysine and D-lysine ABC transporter, permease component 1 (from data) -5.4  
D-Lysine PP_3595 L-lysine and D-lysine ABC transporter, permease component 2 (from data) -5.0  
D-Lysine PP_3596 D-lysine oxidase -5.9  
D-Lysine PP_3597 L-lysine and D-lysine ABC transporter, ATPase component (from data) -3.6  
D-Lysine PP_5257 L-pipecolate oxidase -2.8  
D-Lysine PP_5258 L-piperidine-6-carboxylate dehydrogenase -2.6  
D-Lysine PP_5260 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) -3.1  
DL-2-Aminobutyric acid PP_0020 hypothetical protein +1.3  
DL-2-Aminobutyric acid PP_0118 zinc import ATP-binding protein +2.0  
DL-2-Aminobutyric acid PP_0128 conserved protein of unknown function +1.0  
DL-2-Aminobutyric acid PP_0137 glutamate/aspartate-proton DAACS transporter -3.1  
DL-2-Aminobutyric acid PP_0146 putative transport protein -1.1  
DL-2-Aminobutyric acid PP_0234 outer-membrane porin E +1.1  
DL-2-Aminobutyric acid PP_0247 Osmolarity sensor protein EnvZ -1.5  
DL-2-Aminobutyric acid PP_0266 Agmatine deiminase +1.1  
DL-2-Aminobutyric acid PP_0380 Coenzyme PQQ synthesis protein A +1.9  
DL-2-Aminobutyric acid PP_0409 Sensory box histidine kinase +3.1  
DL-2-Aminobutyric acid PP_0412 Polyamine ABC transporter, periplasmic polyamine-binding protein +1.1  
DL-2-Aminobutyric acid PP_0428 aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase -1.1  
DL-2-Aminobutyric acid PP_0575 conserved membrane protein of unknown function -2.5  
DL-2-Aminobutyric acid PP_0594 Transcriptional regulator, TetR family -1.1  
DL-2-Aminobutyric acid PP_0597 methylmalonate-semialdehyde dehydrogenase -1.7  
DL-2-Aminobutyric acid PP_0680 ATP-dependent protease-like protein -3.4  
DL-2-Aminobutyric acid PP_0850 Dual-specificity RNA methyltransferase RlmN +1.6  
DL-2-Aminobutyric acid PP_0864 ornithine decarboxylase +1.2  
DL-2-Aminobutyric acid PP_0899 putative Ferredoxin reductase -1.0  
DL-2-Aminobutyric acid PP_1066 C4-dicarboxylate transport transcriptional regulatory protein -2.9  
DL-2-Aminobutyric acid PP_1067 Sensor histidine kinase -3.6  
DL-2-Aminobutyric acid PP_1071 glutamate / aspartate ABC transporter - periplasmic binding protein -1.8  
DL-2-Aminobutyric acid PP_1236 putative Glycine cleavage system transcriptional repressor +1.4  
DL-2-Aminobutyric acid PP_1291 PhoH family protein +1.5  
DL-2-Aminobutyric acid PP_1444 quinoprotein glucose dehydrogenase +3.1  
DL-2-Aminobutyric acid PP_1758 putative sulfurtransferase containing rhodanese-like domain +1.9  
DL-2-Aminobutyric acid PP_1827 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase +1.5  
DL-2-Aminobutyric acid PP_1842 Glutamine amidotransferase, class I -1.2  
DL-2-Aminobutyric acid PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase +1.1  
DL-2-Aminobutyric acid PP_2181 Transcriptional regulator, Cro/CI family +1.7  
DL-2-Aminobutyric acid PP_2211 Transcriptional regulator, AraC family -2.4  
DL-2-Aminobutyric acid PP_2216 short-chain acyl-CoA dehydrogenase -1.9  
DL-2-Aminobutyric acid PP_2245 Transcriptional regulator, Cro/CI family -4.3  
DL-2-Aminobutyric acid PP_2389 conserved protein of unknown function +4.0  
DL-2-Aminobutyric acid PP_3377 2-ketogluconate transporter, putative -1.6  
DL-2-Aminobutyric acid PP_3380 2-ketogluconate utilization repressor -1.7  
DL-2-Aminobutyric acid PP_3415 Transcriptional regulator, LacI family +2.3  
DL-2-Aminobutyric acid PP_3504 conserved protein of unknown function -1.3  
DL-2-Aminobutyric acid PP_3654 leucine-responsive regulatory protein -4.2  
DL-2-Aminobutyric acid PP_3761 Sensor histidine kinase/response regulator +1.6  
DL-2-Aminobutyric acid PP_4059 fused trehalose synthase B/maltokinase +1.3  
DL-2-Aminobutyric acid PP_4184 branched chain amino acid transporter +3.5  
DL-2-Aminobutyric acid PP_4197 Transcriptional regulator, GntR family -1.0  
DL-2-Aminobutyric acid PP_4400 Bkd operon transcriptional regulator -1.4  
DL-2-Aminobutyric acid PP_4401 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit -1.8  
DL-2-Aminobutyric acid PP_4402 branched-chain alpha-keto acid dehydrogenase complex, beta subunit -1.7  
DL-2-Aminobutyric acid PP_4403 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex -2.0  
DL-2-Aminobutyric acid PP_4483 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit +1.6  
DL-2-Aminobutyric acid PP_4484 histidine / lysine / arginine / ornithine ABC transporter - permease subunit +2.6  
DL-2-Aminobutyric acid PP_4485 histidine / lysine / arginine / ornithine ABC transporter - permease subunit +2.5  
DL-2-Aminobutyric acid PP_4486 lysine / arginine / ornithine ABC transporter - periplasmic binding protein +2.6  
DL-2-Aminobutyric acid PP_4487 acetyl-CoA synthetase -1.6  
DL-2-Aminobutyric acid PP_4632 dihydrofolate reductase / dihydromonapterin reductase -1.8  
DL-2-Aminobutyric acid PP_4641 putative transporter +1.1  
DL-2-Aminobutyric acid PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase -2.5  
DL-2-Aminobutyric acid PP_4692 putative aspartate/tyrosine/aromatic aminotransferase -1.7  
DL-2-Aminobutyric acid PP_4779 AMP nucleosidase -3.8  
DL-2-Aminobutyric acid PP_4893 GTPase HflX -1.2  
DL-2-Aminobutyric acid PP_4896 DNA mismatch repair protein MutL -1.5  
DL-2-Aminobutyric acid PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase -1.5  
DL-2-Aminobutyric acid PP_4959 diguanylate cyclase +1.6  
DL-2-Aminobutyric acid PP_4985 16S rRNA m3U1498 methyltransferase -1.5  
DL-2-Aminobutyric acid PP_5072 efflux transporter +1.3  
DL-2-Aminobutyric acid PP_5233 ammonium transporter AmtB -2.2  
DL-2-Aminobutyric acid PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) -3.0  
DL-2-Aminobutyric acid PP_5271 DNA-binding transcriptional dual regulator, leucine-binding -2.1  
DL-2-Aminobutyric acid PP_5332 conserved protein of unknown function -1.1  
DL-3-Aminoisobutyric acid PP_0411 Polyamine ABC transporter, ATP-binding protein -1.2  
DL-3-Aminoisobutyric acid PP_0595 Transcriptional regulator, LysR family -6.3  
DL-3-Aminoisobutyric acid PP_0596 Omega-amino acid--pyruvate aminotransferase -6.6  
DL-3-Aminoisobutyric acid PP_0597 methylmalonate-semialdehyde dehydrogenase -1.7  
DL-3-Aminoisobutyric acid PP_5271 DNA-binding transcriptional dual regulator, leucine-binding -2.5  
Ethanolamine PP_0542 ethanolamine ammonia-lyase, beta-subunit -3.5  
Ethanolamine PP_0543 ethanolamine ammonia-lyase, alpha-subunit -3.1  
Ethanolamine PP_0546 sigma-54 dependent transcriptional regulator -1.1  
Ethanolamine PP_1349 ATP:cob(I)alamin adenosyltransferase -2.3 Yes
Glycine PP_0986 aminomethyltransferase -5.2 Yes
Glycine PP_0988 glycine dehydrogenase -4.7 Yes
Glycine PP_0989 glycine cleavage system H protein 1 -5.6 Yes
Glycine PP_0997 Sigma-54 dependent transcriptional regulator/sensory box protein -4.5 Yes
Glycine PP_1127 Carboxylesterase -1.4 Yes
Glycine PP_4901 conserved inner membrane protein -3.6 Yes
Hippuric acid PP_0986 aminomethyltransferase -5.6  
Hippuric acid PP_0988 glycine dehydrogenase -5.9  
Hippuric acid PP_0997 Sigma-54 dependent transcriptional regulator/sensory box protein -5.7  
Hippuric acid PP_1127 Carboxylesterase -2.7  
Hippuric acid PP_1377 beta-ketoadipyl-CoA thiolase -3.1  
Hippuric acid PP_1378 alpha-ketoglutarate permease -1.2  
Hippuric acid PP_1380 3-oxoadipate enol-lactonase 2 -1.6  
Hippuric acid PP_2701 Transcriptional regulator, LysR family -2.8  
Hippuric acid PP_2703 major facilitator transporter -2.4  
Hippuric acid PP_2704 Peptidase, M20/M25/M40 family -3.7  
Hippuric acid PP_3716 HTH-type transcriptional regulator -1.3  
Hippuric acid PP_3952 3-oxoadipate CoA-transferase subunit A -2.5  
Hippuric acid PP_5094 putative enzyme with PLP binding domain -1.5  
Hippuric acid PP_5233 ammonium transporter AmtB -2.6  
Hippuric acid PP_5236 conserved protein of unknown function -1.4  
Hydantoin PP_0409 Sensory box histidine kinase +1.2  
Hydantoin PP_0615 Branched-chain amino acid ABC transporter, ATP-binding protein +2.5  
Hydantoin PP_4035 putative PydP transporter, NCS1 nucleoside transporter family -1.1  
L-Alanine PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) -4.3 Yes
L-Alanine PP_5271 DNA-binding transcriptional dual regulator, leucine-binding -3.2 Yes
L-Arginine PP_2932 Amidase family protein -1.9  
L-Arginine PP_4477 N-succinylarginine dihydrolase -5.1 Yes
L-Arginine PP_4478 N-succinylglutamate 5-semialdehyde dehydrogenase -4.2 Yes
L-Arginine PP_4479 arginine N-succinyltransferase, subunit beta -4.3 Yes
L-Arginine PP_4483 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit -2.3 Yes
L-Arginine PP_4484 histidine / lysine / arginine / ornithine ABC transporter - permease subunit -2.3 Yes
L-Arginine PP_4485 histidine / lysine / arginine / ornithine ABC transporter - permease subunit -2.6 Yes
L-Arginine PP_4486 lysine / arginine / ornithine ABC transporter - periplasmic binding protein -2.4 Yes
L-Asparagine PP_0495 type 1 L-asparaginase -1.4 Yes
L-Cysteine PP_2435 cysteine desulfurase -1.6  
L-Cysteine PP_4595 putative LRP-like transcriptional regulator -1.3  
L-Cysteine PP_4629 Sensory box protein +1.7  
L-Glutamic acid monopotassium salt monohydrate PP_0137 glutamate/aspartate-proton DAACS transporter -2.0  
L-Glutamic acid monopotassium salt monohydrate PP_1066 C4-dicarboxylate transport transcriptional regulatory protein -2.4  
L-Glutamic acid monopotassium salt monohydrate PP_1067 Sensor histidine kinase -2.3  
L-Glutamic acid monopotassium salt monohydrate PP_1071 glutamate / aspartate ABC transporter - periplasmic binding protein -1.7  
L-Histidine PP_5029 N-formylglutamate deformylase -4.0 Yes
L-Histidine PP_5030 Imidazolonepropionase -2.6 Yes
L-Histidine PP_5036 probable formiminoglutamate deiminase -5.4 Yes
L-Isoleucine PP_2211 Transcriptional regulator, AraC family -2.0 Yes
L-Isoleucine PP_2213 putative acyl-CoA synthetase -1.1  
L-Isoleucine PP_2216 short-chain acyl-CoA dehydrogenase -2.5 Yes
L-Isoleucine PP_4400 Bkd operon transcriptional regulator -1.6 Yes
L-Isoleucine PP_4401 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit -1.4 Yes
L-Isoleucine PP_4402 branched-chain alpha-keto acid dehydrogenase complex, beta subunit -1.2 Yes
L-Isoleucine PP_4403 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex -1.5 Yes
L-Isoleucine PP_4631 conserved protein of unknown function -2.2 Yes
L-Isoleucine PP_4776 AsnC family transcriptional regulator +1.4 Yes
L-Isoleucine PP_4865 High-affinity branched-chain amino acid transport system permease protein BraE -1.1  
L-Isoleucine PP_4866 High-affinity branched-chain amino acid transport system permease protein BraD -1.2  
L-Isoleucine PP_5345 Acetyltransferase, GNAT family -2.8  
L-Leucine PP_0817 aminotransferase -5.5  
L-Leucine PP_0901 DNA-binding response regulator -1.8  
L-Leucine PP_0902 integral membrane sensor signal transduction histidine kinase variable  
L-Leucine PP_1018 mannose/glucose ABC transporter - ATP binding subunit -1.4  
L-Leucine PP_2245 Transcriptional regulator, Cro/CI family +1.0  
L-Leucine PP_2323 conserved protein of unknown function -1.6  
L-Leucine PP_2430 Transcriptional regulator, AraC family +3.3 Yes
L-Leucine PP_3596 D-lysine oxidase variable  
L-Leucine PP_3760 putative methyltransferase -1.4  
L-Leucine PP_3761 Sensor histidine kinase/response regulator +1.6  
L-Leucine PP_4065 methylcrotonyl-CoA carboxylase biotin-containing subunit beta -2.3  
L-Leucine PP_4363 Sensor histidine kinase/response regulator +1.5  
L-Leucine PP_4401 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit -1.2 Yes
L-Leucine PP_4402 branched-chain alpha-keto acid dehydrogenase complex, beta subunit -1.2 Yes
L-Leucine PP_4403 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex -1.4  
L-Leucine PP_4477 N-succinylarginine dihydrolase -1.6  
L-Leucine PP_4683 transglycosylase/transpeptidase -1.7  
L-Leucine PP_4776 AsnC family transcriptional regulator +2.7  
L-Leucine PP_4863 high-affinity branched-chain amino acid transporter, ATP-binding -1.3 Yes
L-Leucine PP_4864 High-affinity branched-chain amino acid transport ATP-binding protein BraF -1.3 Yes
L-Leucine PP_4865 High-affinity branched-chain amino acid transport system permease protein BraE -1.2 Yes
L-Leucine PP_4866 High-affinity branched-chain amino acid transport system permease protein BraD -1.2 Yes
L-Leucine PP_4867 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) -1.4  
L-Leucine PP_4901 conserved inner membrane protein variable  
L-Leucine PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase +3.4 Yes
L-Leucine PP_4959 diguanylate cyclase +1.5  
L-Leucine PP_5094 putative enzyme with PLP binding domain -2.1  
L-Leucine PP_5345 Acetyltransferase, GNAT family -2.1  
L-Lysine PP_0382 5-aminopentanamidase -1.3 Yes
L-Lysine PP_0383 Lysine 2-monooxygenase -3.3 Yes
L-Lysine PP_0384 Transcriptional regulator, AsnC family -3.3 Yes
L-Lysine PP_1297 putative amino-acid ABC transporter-binding protein YhdW -1.6 Yes
L-Lysine PP_1300 putative amino acid ABC transporter - ATP-binding subunit -2.4 Yes
L-Lysine PP_3592 Transcriptional regulator, RpiR family -1.7  
L-Lysine PP_3593 L-lysine and D-lysine ABC transporter, substrate-binding component (from data) -2.2  
L-Lysine PP_3594 L-lysine and D-lysine ABC transporter, permease component 1 (from data) -2.1  
L-Lysine PP_3595 L-lysine and D-lysine ABC transporter, permease component 2 (from data) -2.3  
L-Lysine PP_3596 D-lysine oxidase -2.5  
L-Lysine PP_3597 L-lysine and D-lysine ABC transporter, ATPase component (from data) -1.6  
L-Lysine PP_5257 L-pipecolate oxidase -1.0  
L-Lysine PP_5260 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) -1.3  
L-Methionine PP_0145 Na+/Pi-cotransporter +1.4  
L-Methionine PP_0409 Sensory box histidine kinase +2.3  
L-Methionine PP_1308 methionine gamma-lyase -1.2 Yes
L-Methionine PP_2245 Transcriptional regulator, Cro/CI family +3.4  
L-Methionine PP_2389 conserved protein of unknown function +2.1  
L-Methionine PP_3653 Transporter, LysE family +6.2 Yes
L-Methionine PP_3654 leucine-responsive regulatory protein +6.1 Yes
L-Methionine PP_4173 Sensor histidine kinase/response regulator +1.6  
L-Methionine PP_4402 branched-chain alpha-keto acid dehydrogenase complex, beta subunit -1.1  
L-Methionine PP_4403 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex -1.4  
L-Methionine PP_4595 putative LRP-like transcriptional regulator +1.4  
L-Methionine PP_4629 Sensory box protein +2.2  
L-Methionine PP_4754 Transcriptional regulator, TetR family +3.6  
L-Methionine PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase +3.7 Yes
L-Methionine PP_5233 ammonium transporter AmtB -1.9  
L-Ornithine PP_3776 putative permease (RarD protein) -1.7  
L-Ornithine PP_4478 N-succinylglutamate 5-semialdehyde dehydrogenase -2.4  
L-Ornithine PP_4863 high-affinity branched-chain amino acid transporter, ATP-binding -1.6  
L-Ornithine PP_4864 High-affinity branched-chain amino acid transport ATP-binding protein BraF -1.6  
L-Ornithine PP_4865 High-affinity branched-chain amino acid transport system permease protein BraE -1.7  
L-Ornithine PP_4866 High-affinity branched-chain amino acid transport system permease protein BraD -1.6  
L-Ornithine PP_4867 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) -1.5  
L-Ornithine PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase -5.3  
L-Phenylalanine PP_1137 high-affinity branched-chain amino acid transporter, ATP binding -1.5 Yes
L-Phenylalanine PP_1139 branched chain amino acid transporter - permease subunit -1.4 Yes
L-Phenylalanine PP_1140 branched chain amino acid transporter - permease subunit -1.3 Yes
L-Phenylalanine PP_1141 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit -1.4 Yes
L-Phenylalanine PP_1620 5'(3')-nucleotidase and polyphosphatase -2.0  
L-Phenylalanine PP_1866 Phospho-2-dehydro-3-deoxyheptonate aldolase -1.6  
L-Phenylalanine PP_1917 4-amino-4-deoxychorismate lyase -1.9  
L-Phenylalanine PP_2329 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex -1.9  
L-Phenylalanine PP_3433 4-hydroxyphenylpyruvate dioxygenase -3.3 Yes
L-Phenylalanine PP_4489 sigma-54 dependent transcriptional regulator -3.3 Yes
L-Phenylalanine PP_4490 phenylalanine-4-hydroxylase -3.0 Yes
L-Phenylalanine PP_4619 Maleylacetoacetate isomerase -1.5 Yes
L-Phenylalanine PP_5465 conserved protein of unknown function -1.3  
L-Pipecolic Acid PP_2245 Transcriptional regulator, Cro/CI family +1.0  
L-Pipecolic Acid PP_4106 gamma-aminobutyrate permease -1.5  
L-Pipecolic Acid PP_4108 2-aminoadipate transaminase (EC 2.6.1.39) (from data) -2.7  
L-Pipecolic Acid PP_4493 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) -1.3  
L-Pipecolic Acid PP_5257 L-pipecolate oxidase -2.6 Yes
L-Pipecolic Acid PP_5258 L-piperidine-6-carboxylate dehydrogenase -3.0 Yes
L-Pipecolic Acid PP_5260 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) -3.7  
L-Proline PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase -5.0 Yes
L-Serine PP_3144 L-serine dehydratase -2.3 Yes
L-Threonine PP_0321 low specificity L-threonine aldolase -3.8 Yes
L-Threonine PP_0986 aminomethyltransferase -2.6 Yes
L-Threonine PP_0988 glycine dehydrogenase -2.8 Yes
L-Threonine PP_0997 Sigma-54 dependent transcriptional regulator/sensory box protein -2.2 Yes
L-Threonine PP_5033 Urocanate hydratase +1.3  
L-Threonine PP_5034 Uncharacterized 21.2 kDa protein in hutC 3'region +1.2  
L-Threonine PP_5233 ammonium transporter AmtB -1.5 Yes
L-Valine PP_0642 conserved membrane protein of unknown function -2.8  
L-Valine PP_3491 Enoly-coenzyme A hydratase/isomerase family protein -1.2 Yes
L-Valine PP_3492 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) -1.1 Yes
L-Valine PP_4401 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit -1.3 Yes
L-Valine PP_4402 branched-chain alpha-keto acid dehydrogenase complex, beta subunit -1.2 Yes
L-Valine PP_4403 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex -1.3 Yes
L-Valine PP_4668 Transcriptional regulator, LysR family -1.5 Yes
L-Valine PP_5149 threonine deaminase -1.1  
L-Valine PP_5188 putative transcriptional regulator (AsnC/Lrp family) -3.2 Yes
L-Valine PP_5452 protein of unknown function -1.7  
L-pyroglutamic acid PP_4575 Urea amidolyase-related protein -4.2  
L-pyroglutamic acid PP_4576 allophanate hydrolase subunit -3.8  
L-pyroglutamic acid PP_4577 UPF0271 protein PP_4577 -3.8  
L-pyroglutamic acid PP_4578 Major facilitator family transporter -3.2  
L-pyroglutamic acid PP_4579 Transcriptional regulator, LysR family -3.3  
Nicotinic Acid PP_0625 Chaperone protein ClpB -1.6  
Nicotinic Acid PP_1292 Cyclic pyranopterin monophosphate synthase accessory protein -1.7  
Nicotinic Acid PP_3828 Molybdate-binding periplasmic protein -1.7  
Nicotinic Acid PP_3829 Molybdenum transport system permease protein ModB -1.6  
Nicotinic Acid PP_3830 Molybdenum import ATP-binding protein ModC -1.4  
Nicotinic Acid PP_3941 maleamate amidohydrolase -1.8  
Nicotinic Acid PP_3942 maleate isomerase -1.7  
Nicotinic Acid PP_3943 N-formylmaleamate deformylase -1.6  
Nicotinic Acid PP_3944 6-hydroxynicotinate 3-monooxygenase -1.5  
Nicotinic Acid PP_3945 2,5-dihydroxypyridine 5,6-dioxygenase -1.6  
Nicotinic Acid PP_3947 nicotinate dehydrogenase subunit A -1.3  
Nicotinic Acid PP_3948 nicotinate dehydrogenase subunit B (EC 1.17.2.1) (from data) -1.4  
Propandiamine PP_0066 Ribosomal RNA small subunit methyltransferase B -2.1  
Propandiamine PP_0213 succinate-semialdehyde dehydrogenase (NADP+) -5.9  
Propandiamine PP_0247 Osmolarity sensor protein EnvZ -2.4  
Propandiamine PP_0266 Agmatine deiminase -5.3  
Propandiamine PP_0282 L-arginine ABC transporter - periplasmic binding subunit +1.5  
Propandiamine PP_0384 Transcriptional regulator, AsnC family +1.2  
Propandiamine PP_0412 Polyamine ABC transporter, periplasmic polyamine-binding protein +1.3  
Propandiamine PP_0567 Biosynthetic arginine decarboxylase -5.6  
Propandiamine PP_0595 Transcriptional regulator, LysR family -5.1  
Propandiamine PP_0596 Omega-amino acid--pyruvate aminotransferase -6.3  
Propandiamine PP_0597 methylmalonate-semialdehyde dehydrogenase -5.3  
Propandiamine PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase -3.6  
Propandiamine PP_0795 fructose PTS permease - IIBC component -1.7  
Propandiamine PP_1013 Sensor histidine kinase -3.6  
Propandiamine PP_1015 mannose/glucose ABC transporter, glucose-binding periplasmic protein -4.5  
Propandiamine PP_1016 mannose/glucose ABC transporter, permease protein -3.7  
Propandiamine PP_1017 mannose/glucose ABC transporter, permease protein -3.9  
Propandiamine PP_1018 mannose/glucose ABC transporter - ATP binding subunit -2.8  
Propandiamine PP_1185 Outer membrane protein H1 +2.4  
Propandiamine PP_1234 putative permease -1.3  
Propandiamine PP_1346 Glutamate N-acetyltransferase/Amino-acid acetyltransferase -1.7  
Propandiamine PP_1440 tRNA (mo5U34)-methyltransferase -2.8  
Propandiamine PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA -1.4  
Propandiamine PP_1758 putative sulfurtransferase containing rhodanese-like domain -3.0  
Propandiamine PP_1842 Glutamine amidotransferase, class I -5.0  
Propandiamine PP_1844 1-acyl-sn-glycerol-3-phosphate acyltransferase -1.3  
Propandiamine PP_1917 4-amino-4-deoxychorismate lyase -2.6  
Propandiamine PP_2181 Transcriptional regulator, Cro/CI family -5.5  
Propandiamine PP_2223 conserved protein of unknown function -1.2  
Propandiamine PP_2448 Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) +1.3  
Propandiamine PP_2543 gamma-aminobutyrate permease +1.6  
Propandiamine PP_2657 phosphate ABC transporter -1.1  
Propandiamine PP_2884 XRE family transcriptional regulator +3.4  
Propandiamine PP_2892 conserved exported protein of unknown function -1.2  
Propandiamine PP_2893 conserved exported protein of unknown function -1.4  
Propandiamine PP_2932 Amidase family protein -6.1  
Propandiamine PP_3415 Transcriptional regulator, LacI family +5.1  
Propandiamine PP_3598 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data) -1.8  
Propandiamine PP_3731 Transcriptional regulator, TetR family -2.1  
Propandiamine PP_3957 choline/carnitine/betaine transporter BetTC +2.5  
Propandiamine PP_3990 substrate or modulator of FtsH-mediated proteolysis -1.5  
Propandiamine PP_4184 branched chain amino acid transporter +1.2  
Propandiamine PP_4304 Cation transporter, VIC family -1.5  
Propandiamine PP_4479 arginine N-succinyltransferase, subunit beta +2.7  
Propandiamine PP_4487 acetyl-CoA synthetase -2.2  
Propandiamine PP_4547 putative Glutamine synthetase -5.9  
Propandiamine PP_4548 putative Oxidoreductase -5.7  
Propandiamine PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase +1.2  
Propandiamine PP_4774 divalent cation efflux transporter -1.3  
Propandiamine PP_4900 epoxyqueuosine reductase -1.2  
Propandiamine PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase -2.2  
Propandiamine PP_5055 Sulfurtransferase -3.6  
Propandiamine PP_5096 putative factor involved in shape determination -5.0  
Propandiamine PP_5180 spermidine/putrescine ABC transporter - periplasmic subunit -1.6  
Propandiamine PP_5184 glutamylpolyamine synthetase -4.7  
Propandiamine PP_5212 Oxidoreductase, iron-sulfur-binding -4.9  
Propandiamine PP_5236 conserved protein of unknown function +1.6  
Propandiamine PP_5262 Probable multidrug resistance protein NorM -5.0  
Propandiamine PP_5268 DNA-binding transcriptional repressor PuuR-putrescine +2.1  
Propandiamine PP_5271 DNA-binding transcriptional dual regulator, leucine-binding -2.3  
Propandiamine PP_5273 putative Oxidoreductase +1.1  
Propandiamine PP_5278 4-guanidinobutyraldehyde dehydrogenase -3.9  
Propandiamine PP_5719 choline-responsive transcriptional repressor BetI -4.6  
Putrescine Dihydrochloride PP_2448 Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) -3.1 Yes
Putrescine Dihydrochloride PP_3598 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data) -4.0  
Putrescine Dihydrochloride PP_5184 glutamylpolyamine synthetase -3.2 Yes
Putrescine Dihydrochloride PP_5278 4-guanidinobutyraldehyde dehydrogenase -3.2 Yes
Sodium nitrate PP_1292 Cyclic pyranopterin monophosphate synthase accessory protein -3.6 Yes
Sodium nitrate PP_1294 molybdopterin synthase large subunit -3.8 Yes
Sodium nitrate PP_1703 assimilatory nitrate reductase/sulfite reductase -3.1 Yes
Sodium nitrate PP_1705 nitrite reductase [NAD(P)H] large subunit -3.9 Yes
Sodium nitrate PP_1706 Nitrite reductase -4.7 Yes
Sodium nitrate PP_2092 Nitrate transporter -2.8 Yes
Sodium nitrate PP_2093 NasT -3.3 Yes
Sodium nitrate PP_2123 molybdenum::molybdopterin ligase -3.7 Yes
Sodium nitrate PP_3828 Molybdate-binding periplasmic protein variable Yes
Sodium nitrate PP_3829 Molybdenum transport system permease protein ModB -3.1 Yes
Sodium nitrate PP_3830 Molybdenum import ATP-binding protein ModC variable  
Sodium nitrate PP_4597 Cyclic pyranopterin monophosphate synthase -2.7 Yes
Sodium nitrite PP_1408 (R)-3-hydroxydecanoyl-ACP:CoA transacylase variable  
Sodium nitrite PP_1444 quinoprotein glucose dehydrogenase -1.6  
Sodium nitrite PP_1705 nitrite reductase [NAD(P)H] large subunit -3.1 Yes
Sodium nitrite PP_1706 Nitrite reductase -3.6  
Sodium nitrite PP_2093 NasT -2.9 Yes
Sodium nitrite PP_2349 nitrite transporter, HPP family (from data) variable  
Sodium nitrite PP_2350 LysR family transcriptional regulator variable Yes
Sodium nitrite PP_3377 2-ketogluconate transporter, putative variable  
Uracil PP_0595 Transcriptional regulator, LysR family -2.1  
Uracil PP_0596 Omega-amino acid--pyruvate aminotransferase -6.7  
Uracil PP_0597 methylmalonate-semialdehyde dehydrogenase -1.2  
Uracil PP_3377 2-ketogluconate transporter, putative -1.2  
Uracil PP_4036 D-hydantoinase/dihydropyrimidinase -3.0  
Uracil PP_4037 NADP-dependent dihydropyrimidine dehydrogenase subunit -3.3  
Uracil PP_4038 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) -4.1  
Uracil PP_5233 ammonium transporter AmtB -1.4  
e-Amino-N-Caproic Acid PP_0409 Sensory box histidine kinase +1.6  
e-Amino-N-Caproic Acid PP_2884 XRE family transcriptional regulator +4.7  
e-Amino-N-Caproic Acid PP_3835 Sensory box histidine kinase +1.3  
e-Amino-N-Caproic Acid PP_4629 Sensory box protein +1.5  
e-Amino-N-Caproic Acid PP_5178 spermidine/putrescine ABC transporter - inner membrane subunit -1.3  
e-Amino-N-Caproic Acid PP_5179 spermidine/putrescine ABC transporter - ATP binding subunit -1.4  
spermidine PP_0247 Osmolarity sensor protein EnvZ -1.8  
spermidine PP_0595 Transcriptional regulator, LysR family -1.4  
spermidine PP_0596 Omega-amino acid--pyruvate aminotransferase -3.4  
spermidine PP_0597 methylmalonate-semialdehyde dehydrogenase -2.6  
spermidine PP_2226 putative K(+)/H(+) antiporter subunit F -1.3  
spermidine PP_2227 putative Multicomponent potassium-proton antiporter, subunit E -1.2  
spermidine PP_2228 putative K(+)/H(+) antiporter subunit D -1.2  
spermidine PP_3146 putative Oxidoreductase -4.6  
spermidine PP_3147 putrescine-binding periplasmic protein -2.6  
spermidine PP_3148 putative Glutamine synthetase -3.2  
spermidine PP_3149 Transcriptional regulator, AraC family -1.5  
spermidine PP_3990 substrate or modulator of FtsH-mediated proteolysis -1.4  
spermidine PP_4304 Cation transporter, VIC family -5.3  
spermidine PP_5055 Sulfurtransferase -2.4  
spermidine PP_5096 putative factor involved in shape determination -5.2  
spermidine PP_5177 spermidine/putrescine ABC transporter - permease subunit -2.3  
spermidine PP_5178 spermidine/putrescine ABC transporter - inner membrane subunit -2.2 Yes
spermidine PP_5179 spermidine/putrescine ABC transporter - ATP binding subunit -2.5 Yes
spermidine PP_5181 spermidine/putrescine ABC transporter - periplasmic subunit -1.7  
spermidine PP_5278 4-guanidinobutyraldehyde dehydrogenase -3.2