| Condition | Gene | Description | Fitness | Cons. |
|---|
| Adenosine | b0133 | pantoate--beta-alanine ligase (NCBI) | -3.3 | |
| Adenosine | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | -3.3 | |
| Adenosine | b3459 | hypothetical protein (NCBI) | -3.1 | |
| Adenosine | b3643 | ribonuclease PH (NCBI) | +1.9 | Yes |
| Adenosine | b3869 | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | -1.6 | |
| Ammonium chloride | b0133 | pantoate--beta-alanine ligase (NCBI) | -1.9 | Yes |
| Ammonium chloride | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | -2.5 | Yes |
| Ammonium chloride | b1682 | cysteine desulfurase ATPase component (NCBI) | +1.2 | |
| Ammonium chloride | b3459 | hypothetical protein (NCBI) | -1.7 | |
| Cytidine | b0133 | pantoate--beta-alanine ligase (NCBI) | -1.7 | |
| Cytidine | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | -2.1 | |
| Cytidine | b3292 | zinc-responsive transcriptional regulator (NCBI) | -2.0 | |
| Cytidine | b3459 | hypothetical protein (NCBI) | -1.7 | |
| D-Alanine | b0133 | pantoate--beta-alanine ligase (NCBI) | -2.5 | |
| D-Alanine | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | -2.0 | |
| D-Alanine | b0451 | ammonium transporter (NCBI) | -2.9 | Yes |
| D-Alanine | b0674 | asparagine synthetase B (NCBI) | -1.8 | |
| D-Alanine | b1189 | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | -3.3 | Yes |
| D-Alanine | b1190 | alanine racemase (NCBI) | -1.4 | Yes |
| D-Alanine | b3459 | hypothetical protein (NCBI) | -2.7 | |
| D-Alanine | b3869 | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | -3.4 | |
| D-Alanine | b4054 | tyrosine aminotransferase, tyrosine-repressible, PLP-dependent (NCBI) | -1.1 | |
| D-Serine | b0131 | aspartate 1-decarboxylase precursor (NCBI) | -2.9 | |
| D-Serine | b0133 | pantoate--beta-alanine ligase (NCBI) | -2.6 | |
| D-Serine | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | -2.7 | |
| D-Serine | b1602 | pyridine nucleotide transhydrogenase (NCBI) | -1.5 | |
| D-Serine | b1702 | phosphoenolpyruvate synthase (NCBI) | -2.8 | |
| D-Serine | b2364 | DNA-binding transcriptional dual regulator (NCBI) | -3.8 | Yes |
| D-Serine | b2366 | D-serine dehydratase (NCBI) | -4.7 | Yes |
| D-Serine | b3292 | zinc-responsive transcriptional regulator (NCBI) | -1.6 | |
| D-Serine | b3454 | ATP-binding component of leucine transport (VIMSS) | +2.6 | |
| D-Serine | b3455 | leucine/isoleucine/valine transporter subunit (NCBI) | +2.4 | |
| D-Serine | b3456 | leucine/isoleucine/valine transporter subunit (NCBI) | +2.6 | Yes |
| D-Serine | b3457 | leucine/isoleucine/valine transporter subunit (NCBI) | +2.4 | Yes |
| D-Serine | b3458 | leucine transporter subunit (NCBI) | +1.6 | Yes |
| D-Serine | b3459 | hypothetical protein (NCBI) | -2.6 | |
| D-Serine | b3460 | leucine/isoleucine/valine transporter subunit (NCBI) | +2.1 | |
| Gly-DL-Asp | b0674 | asparagine synthetase B (NCBI) | -4.0 | |
| Gly-DL-Asp | b1338 | putative aminohydrolase (EC 3.5.1.14) (VIMSS) | +1.5 | |
| Gly-DL-Asp | b1988 | DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI) | -1.9 | Yes |
| Gly-DL-Asp | b3496 | predicted transporter (NCBI) | -1.5 | |
| Gly-DL-Asp | b3540 | dipeptide transporter (NCBI) | -1.1 | Yes |
| Gly-DL-Asp | b3541 | dipeptide transporter (NCBI) | -1.1 | Yes |
| Gly-DL-Asp | b3542 | dipeptide transporter (NCBI) | -1.4 | Yes |
| Gly-DL-Asp | b3543 | dipeptide ABC transporter, membrane subunit (DppB) (from data) | -1.4 | Yes |
| Gly-DL-Asp | b3544 | dipeptide transporter (NCBI) | -1.3 | Yes |
| Gly-DL-Asp | b4024 | aspartate kinase III (NCBI) | -1.1 | |
| Gly-DL-Asp | b4054 | tyrosine aminotransferase, tyrosine-repressible, PLP-dependent (NCBI) | -1.7 | |
| Gly-Glu | b0382 | hypothetical protein (NCBI) | +1.6 | |
| Gly-Glu | b0674 | asparagine synthetase B (NCBI) | -3.6 | |
| Gly-Glu | b1338 | putative aminohydrolase (EC 3.5.1.14) (VIMSS) | +2.0 | |
| Gly-Glu | b2916 | chromosome replication initiation inhibitor protein (NCBI) | +1.4 | |
| Gly-Glu | b3541 | dipeptide transporter (NCBI) | -1.4 | Yes |
| Gly-Glu | b3542 | dipeptide transporter (NCBI) | -1.2 | Yes |
| Gly-Glu | b3543 | dipeptide ABC transporter, membrane subunit (DppB) (from data) | -1.4 | Yes |
| Gly-Glu | b3544 | dipeptide transporter (NCBI) | -1.1 | Yes |
| Glycine | b0451 | ammonium transporter (NCBI) | -2.9 | Yes |
| Glycine | b0674 | asparagine synthetase B (NCBI) | -3.2 | |
| Glycine | b0932 | aminopeptidase N (NCBI) | -1.2 | |
| Glycine | b1661 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | -1.5 | |
| Glycine | b1814 | L-serine deaminase I (NCBI) | -3.7 | Yes |
| L-Alanine | b1190 | alanine racemase (NCBI) | -1.6 | Yes |
| L-Alanine | b2670 | predicted inner membrane protein (NCBI) | -1.7 | |
| L-Alanine | b3869 | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | -1.3 | |
| L-Arginine | b0674 | asparagine synthetase B (NCBI) | -2.8 | |
| L-Arginine | b1188 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +4.6 | |
| L-Arginine | b1745 | succinylarginine dihydrolase (NCBI) | -3.4 | Yes |
| L-Arginine | b1746 | succinylglutamic semialdehyde dehydrogenase (NCBI) | -3.2 | Yes |
| L-Arginine | b1747 | arginine succinyltransferase (NCBI) | -3.9 | Yes |
| L-Arginine | b1748 | succinylornithine transaminase, PLP-dependent (NCBI) | -4.1 | Yes |
| L-Arginine | b1782 | scaffolding protein for murein synthesizing machinery (NCBI) | +1.1 | |
| L-Arginine | b1783 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +4.4 | |
| L-Arginine | b1784 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +4.2 | |
| L-Arginine | b1988 | DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI) | +2.0 | |
| L-Arginine | b2306 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | -1.1 | Yes |
| L-Arginine | b2307 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | -1.4 | Yes |
| L-Arginine | b2308 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | -1.4 | Yes |
| L-Arginine | b3869 | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | -1.4 | |
| L-Asparagine | b1767 | cytoplasmic asparaginase I (NCBI) | -4.4 | Yes |
| L-Aspartic Acid | b0674 | asparagine synthetase B (NCBI) | -2.1 | |
| L-Aspartic Acid | b4138 | C4-dicarboxylate antiporter (NCBI) | -3.1 | Yes |
| L-Glutamine | b0133 | pantoate--beta-alanine ligase (NCBI) | -1.7 | |
| L-Glutamine | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | -1.5 | |
| L-Glutamine | b3459 | hypothetical protein (NCBI) | -1.7 | |
| L-Serine | b0112 | aromatic amino acid transporter (NCBI) | +1.1 | |
| L-Serine | b1814 | L-serine deaminase I (NCBI) | -5.1 | Yes |
| L-Serine | b3494 | universal stress protein UspB (NCBI) | -1.5 | |
| Putrescine Dihydrochloride | b0213 | orf, hypothetical protein (VIMSS) | -1.6 | |
| Putrescine Dihydrochloride | b0382 | hypothetical protein (NCBI) | +2.8 | |
| Putrescine Dihydrochloride | b0451 | ammonium transporter (NCBI) | -2.0 | Yes |
| Putrescine Dihydrochloride | b0563 | DLP12 prophage; predicted protein (RefSeq) | -1.1 | |
| Putrescine Dihydrochloride | b0674 | asparagine synthetase B (NCBI) | -5.5 | |
| Putrescine Dihydrochloride | b0848 | predicted inner membrane protein (NCBI) | -2.7 | |
| Putrescine Dihydrochloride | b1162 | predicted DNA-binding transcriptional regulator (NCBI) | -1.2 | |
| Putrescine Dihydrochloride | b1296 | putative amino acid/amine transport protein (VIMSS) | -4.7 | Yes |
| Putrescine Dihydrochloride | b1297 | putative glutamine synthetase (EC 6.3.1.2) (VIMSS) | -4.9 | Yes |
| Putrescine Dihydrochloride | b1298 | probable amidotransferase subunit (VIMSS) | -5.3 | Yes |
| Putrescine Dihydrochloride | b1299 | DNA-binding transcriptional repressor (NCBI) | -5.2 | |
| Putrescine Dihydrochloride | b1300 | gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) | -5.3 | Yes |
| Putrescine Dihydrochloride | b1301 | gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) | -6.9 | Yes |
| Putrescine Dihydrochloride | b1864 | hypothetical protein (NCBI) | -1.4 | |
| Putrescine Dihydrochloride | b1896 | trehalose-6-phosphate synthase (NCBI) | +1.5 | |
| Putrescine Dihydrochloride | b1983 | hypothetical protein (NCBI) | -1.6 | |
| Putrescine Dihydrochloride | b2181 | hypothetical protein (NCBI) | +4.6 | |
| Putrescine Dihydrochloride | b2326 | hypothetical protein (NCBI) | -1.6 | |
| Putrescine Dihydrochloride | b2517 | predicted enzyme (NCBI) | -2.4 | |
| Putrescine Dihydrochloride | b2812 | hypothetical protein (NCBI) | -1.1 | |
| Putrescine Dihydrochloride | b2916 | chromosome replication initiation inhibitor protein (NCBI) | -1.3 | |
| Putrescine Dihydrochloride | b3073 | putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent (RefSeq) | -1.4 | Yes |
| Putrescine Dihydrochloride | b3075 | DNA-binding transcriptional repressor (NCBI) | +1.4 | |
| Putrescine Dihydrochloride | b3166 | tRNA pseudouridine synthase B (NCBI) | -2.8 | |
| Putrescine Dihydrochloride | b3252 | conserved inner membrane protein (NCBI) | -2.0 | |
| Putrescine Dihydrochloride | b3292 | zinc-responsive transcriptional regulator (NCBI) | -2.3 | |
| Putrescine Dihydrochloride | b3397 | ADP-ribose diphosphatase (NCBI) | +2.9 | |
| Putrescine Dihydrochloride | b3423 | DNA-binding transcriptional repressor (NCBI) | -3.0 | |
| Putrescine Dihydrochloride | b3432 | glycogen branching enzyme (NCBI) | -2.0 | |
| Putrescine Dihydrochloride | b3494 | universal stress protein UspB (NCBI) | +1.8 | |
| Putrescine Dihydrochloride | b3507 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | +1.0 | |
| Putrescine Dihydrochloride | b3527 | predicted zinc-dependent peptidase (NCBI) | -1.5 | |
| Putrescine Dihydrochloride | b3712 | predicted phosphopantetheinyl transferase (RefSeq) | -1.0 | |
| Putrescine Dihydrochloride | b3780 | ATP-dependent RNA helicase (NCBI) | -2.6 | |
| Putrescine Dihydrochloride | b3869 | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | -3.3 | |
| Putrescine Dihydrochloride | b4022 | 23S rRNA pseudouridine synthase (NCBI) | +1.0 | |
| Putrescine Dihydrochloride | b4024 | aspartate kinase III (NCBI) | +1.3 | |
| Putrescine Dihydrochloride | b4054 | tyrosine aminotransferase, tyrosine-repressible, PLP-dependent (NCBI) | -1.2 | |
| Putrescine Dihydrochloride | b4218 | predicted inner membrane protein (NCBI) | +4.1 | |
| Putrescine Dihydrochloride | b4235 | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | +1.0 | |
| Putrescine Dihydrochloride | b4390 | probable nadAB transcriptional regulator (VIMSS) | -2.6 | |
| Putrescine Dihydrochloride | b4391 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | +1.3 | |
| casamino acids | b0133 | pantoate--beta-alanine ligase (NCBI) | -1.6 | |
| casamino acids | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | -2.0 | |
| casamino acids | b0425 | 2-dehydropantoate 2-reductase (NCBI) | -1.3 | |
| casamino acids | b0774 | adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) | -1.2 | |
| casamino acids | b1704 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible (NCBI) | -1.3 | Yes |
| casamino acids | b3412 | carboxylesterase of pimeloyl-CoA synthesis (NCBI) | -1.1 | |
| casamino acids | b3459 | hypothetical protein (NCBI) | -1.8 | |