Specific Phenotypes for Phocaeicola dorei CL03T12C01 in nitrogen source experiments

Condition Gene Description Fitness Cons.
L-Asparagine ABI39_RS01270 TetR/AcrR family transcriptional regulator -1.3  
L-Asparagine ABI39_RS01410 DUF975 family protein -1.6  
L-Asparagine ABI39_RS02310 peptidylprolyl isomerase -1.2  
L-Asparagine ABI39_RS05630 permease-like cell division protein FtsX +1.1  
L-Asparagine ABI39_RS05775 radical SAM protein -1.7  
L-Asparagine ABI39_RS07825 sodium-dependent transporter +1.7  
L-Asparagine ABI39_RS10325 ABC-F family ATP-binding cassette domain-containing protein +1.5  
L-Asparagine ABI39_RS10620 alanine:cation symporter family protein +5.1  
L-Asparagine ABI39_RS11565 Gfo/Idh/MocA family oxidoreductase +2.2  
L-Asparagine ABI39_RS12705 FKBP-type peptidyl-prolyl cis-trans isomerase +1.9  
L-Asparagine ABI39_RS13815 TonB-dependent receptor -1.4  
L-Asparagine ABI39_RS13820 DUF4625 domain-containing protein -1.5  
L-Asparagine ABI39_RS14320 anaerobic C4-dicarboxylate transporter +5.3 Yes
L-Asparagine ABI39_RS14325 L-asparaginase 2 +2.3 Yes
L-Asparagine ABI39_RS15005 F0F1 ATP synthase subunit alpha -1.3  
L-Asparagine ABI39_RS15280 patatin-like phospholipase domain-containing protein -1.1  
L-Asparagine ABI39_RS15865 hypothetical protein -1.6  
L-Asparagine ABI39_RS16470 SPOR domain-containing protein +1.5  
L-Asparagine ABI39_RS16495 phosphoserine phosphatase SerB -2.1  
L-Asparagine ABI39_RS18150 16S rRNA (uracil(1498)-N(3))-methyltransferase -1.1  
L-Asparagine ABI39_RS18830 C69 family dipeptidase -1.8  
L-Asparagine ABI39_RS19940 ATP-binding cassette domain-containing protein +1.8  
L-Asparagine ABI39_RS20000 YggS family pyridoxal phosphate-dependent enzyme -1.8  
L-Asparagine ABI39_RS20055 aspartate ammonia-lyase -2.1  
L-Asparagine ABI39_RS20380 PstS family phosphate ABC transporter substrate-binding protein +1.6  
L-Asparagine ABI39_RS20680 glutamine--fructose-6-phosphate transaminase (isomerizing) -1.7  
L-Asparagine ABI39_RS21080 type I asparaginase -6.5 Yes
L-Glutamic acid ABI39_RS01285 efflux RND transporter permease subunit +1.1  
L-Glutamic acid ABI39_RS06105 cation transporter -1.9  
L-Glutamic acid ABI39_RS10620 alanine:cation symporter family protein -1.1  
L-Glutamic acid ABI39_RS12120 AMP-binding protein +1.4  
L-Glutamic acid ABI39_RS12605 NTP transferase domain-containing protein -2.1  
L-Glutamic acid ABI39_RS14155 DUF4301 family protein +1.5  
L-Glutamic acid ABI39_RS14270 glutamine synthetase III -5.1 Yes
L-Glutamic acid ABI39_RS14275 ammonium transporter -4.9 Yes
L-Glutamic acid ABI39_RS14290 LL-diaminopimelate aminotransferase -4.8  
L-Glutamic acid ABI39_RS17340 insulinase family protein +2.8  
L-Glutamic acid ABI39_RS18820 EamA family transporter -1.2  
L-Glutamic acid ABI39_RS18955 peptidase T -1.0  
L-Glutamic acid ABI39_RS20025 Crp/Fnr family transcriptional regulator -4.2  
L-Glutamic acid ABI39_RS20665 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit -4.5  
L-Glutamic acid ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -5.7  
L-Glutamic acid ABI39_RS20675 hypothetical protein -4.6  
L-Glutamic acid ABI39_RS20680 glutamine--fructose-6-phosphate transaminase (isomerizing) -2.7  
L-Glutamic acid ABI39_RS20685 glutamate synthase large subunit -5.6 Yes
L-Glutamic acid ABI39_RS20695 asparagine synthase B -2.7 Yes
L-Glutamic acid ABI39_RS21495 transporter -2.0  
L-Glutamic acid ABI39_RS23200 ATP-binding protein -2.0  
L-Glutamine ABI39_RS10620 alanine:cation symporter family protein -2.0  
L-Glutamine ABI39_RS14270 glutamine synthetase III -1.2 Yes
L-Glutamine ABI39_RS20665 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit -2.9  
L-Glutamine ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -3.1  
L-Glutamine ABI39_RS20675 hypothetical protein -1.9  
L-Glutamine ABI39_RS20680 glutamine--fructose-6-phosphate transaminase (isomerizing) -1.3  
L-Serine ABI39_RS00440 excinuclease ABC subunit UvrA -1.5  
L-Serine ABI39_RS01370 efflux RND transporter periplasmic adaptor subunit -1.1  
L-Serine ABI39_RS02100 peptidylprolyl isomerase +1.5 Yes
L-Serine ABI39_RS02110 MATE family efflux transporter +1.1  
L-Serine ABI39_RS06105 cation transporter -1.3  
L-Serine ABI39_RS06635 endonuclease/exonuclease/phosphatase family protein -1.3  
L-Serine ABI39_RS06695 translational GTPase TypA +1.5  
L-Serine ABI39_RS09715 lytic transglycosylase domain-containing protein +1.3  
L-Serine ABI39_RS09780 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -1.9  
L-Serine ABI39_RS10830 hypothetical protein +1.7  
L-Serine ABI39_RS12245 L-serine ammonia-lyase -5.2 Yes
L-Serine ABI39_RS12605 NTP transferase domain-containing protein -1.4  
L-Serine ABI39_RS13500 transporter +1.5 Yes
L-Serine ABI39_RS13815 TonB-dependent receptor -2.2  
L-Serine ABI39_RS13820 DUF4625 domain-containing protein -2.1  
L-Serine ABI39_RS14270 glutamine synthetase III -5.2 Yes
L-Serine ABI39_RS14275 ammonium transporter -4.1 Yes
L-Serine ABI39_RS14290 LL-diaminopimelate aminotransferase -3.8  
L-Serine ABI39_RS14330 OprO/OprP family phosphate-selective porin +1.1  
L-Serine ABI39_RS14970 F0F1 ATP synthase subunit beta -1.6  
L-Serine ABI39_RS15005 F0F1 ATP synthase subunit alpha -1.2  
L-Serine ABI39_RS15330 excinuclease ABC subunit UvrA -1.4  
L-Serine ABI39_RS16955 HAMP domain-containing protein -1.1  
L-Serine ABI39_RS17340 insulinase family protein +2.7  
L-Serine ABI39_RS18945 cation:proton antiporter -1.3 Yes
L-Serine ABI39_RS18955 peptidase T -1.3  
L-Serine ABI39_RS20170 Na+/H+ antiporter NhaA -1.6 Yes
L-Serine ABI39_RS20665 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit -5.6  
L-Serine ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -6.7  
L-Serine ABI39_RS20675 hypothetical protein -4.7  
L-Serine ABI39_RS20680 glutamine--fructose-6-phosphate transaminase (isomerizing) -5.0  
L-Serine ABI39_RS20685 glutamate synthase large subunit -2.4 Yes
L-Serine ABI39_RS20690 glutamate synthase subunit beta -2.0  
L-Serine ABI39_RS20695 asparagine synthase B -1.5 Yes
L-Serine ABI39_RS22145 hypothetical protein -2.4