Specific Phenotypes for Pseudomonas putida KT2440 in mixed carbon source experiments

Condition Gene Description Fitness Cons.
Trisodium citrate dihydrate PP_0147 Citrate transporter -1.6 Yes
Trisodium citrate dihydrate PP_0358 conserved membrane protein of unknown function variable Yes
Trisodium citrate dihydrate PP_0506 putative ABC efflux transporter, permease protein variable Yes
Trisodium citrate dihydrate PP_0507 putative ABC efflux transporter, ATP-binding protein variable Yes
Trisodium citrate dihydrate PP_0589 Bcr/CflA family multidrug resistance transporter variable  
Trisodium citrate dihydrate PP_1137 high-affinity branched-chain amino acid transporter, ATP binding variable  
Trisodium citrate dihydrate PP_1138 branched chain amino acid transporter - ATP binding subunit variable  
Trisodium citrate dihydrate PP_1139 branched chain amino acid transporter - permease subunit variable Yes
Trisodium citrate dihydrate PP_1140 branched chain amino acid transporter - permease subunit variable Yes
Trisodium citrate dihydrate PP_1141 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit variable  
Trisodium citrate dihydrate PP_1321 ClpXP protease specificity-enhancing factor variable  
Trisodium citrate dihydrate PP_1377 beta-ketoadipyl-CoA thiolase variable  
Trisodium citrate dihydrate PP_1416 putative Tricarboxylate transport protein TctA -3.8 Yes
Trisodium citrate dihydrate PP_1417 putative Tricarboxylate transport protein TctB variable Yes
Trisodium citrate dihydrate PP_1418 putative Tricarboxylate transport protein TctC -4.7  
Trisodium citrate dihydrate PP_1420 Transcriptional regulatory protein tctD -4.9  
Trisodium citrate dihydrate PP_1421 putative Sensor histidine kinase TctE -4.3  
Trisodium citrate dihydrate PP_1866 Phospho-2-dehydro-3-deoxyheptonate aldolase variable  
Trisodium citrate dihydrate PP_2098 D-alanyl-D-alanine carboxypeptidase variable  
Trisodium citrate dihydrate PP_2551 Transcriptional regulator, LysR family -2.9  
Trisodium citrate dihydrate PP_2552 DOPA decarboxylase variable  
Trisodium citrate dihydrate PP_3080 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase variable Yes
Trisodium citrate dihydrate PP_3157 Inositol monophosphatase family protein variable  
Trisodium citrate dihydrate PP_3433 4-hydroxyphenylpyruvate dioxygenase variable Yes
Trisodium citrate dihydrate PP_3527 Transcriptional regulator, TetR family variable Yes
Trisodium citrate dihydrate PP_3952 3-oxoadipate CoA-transferase subunit A variable  
Trisodium citrate dihydrate PP_4197 Transcriptional regulator, GntR family -5.3 Yes
Trisodium citrate dihydrate PP_4489 sigma-54 dependent transcriptional regulator variable  
Trisodium citrate dihydrate PP_4490 phenylalanine-4-hydroxylase variable  
Trisodium citrate dihydrate PP_4495 aromatic amino acid transport protein variable  
Trisodium citrate dihydrate PP_4604 putative permease of the drug/metabolite transporter (DMT) superfamily variable  
Trisodium citrate dihydrate PP_4613 outer membrane ferric citrate porin -1.7  
Trisodium citrate dihydrate PP_4619 Maleylacetoacetate isomerase variable Yes
Trisodium citrate dihydrate PP_4621 Homogentisate 1,2-dioxygenase variable  
Trisodium citrate dihydrate PP_4767 amino acid exporter for phenylalanine, threonine variable  
Trisodium citrate dihydrate PP_4896 DNA mismatch repair protein MutL +1.3  
Trisodium citrate dihydrate PP_4971 putative Outer membrane-bound lytic murein transglycolase A variable  
Trisodium citrate dihydrate PP_5086 putative nuclease (SNase domain protein) variable  
Trisodium citrate dihydrate PP_5236 conserved protein of unknown function -1.5  
Trisodium citrate dihydrate PP_5333 conserved exported protein of unknown function variable Yes