| Condition | Gene | Description | Fitness | Cons. |
|---|
| Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS04435 | hypothetical protein | -1.7 | |
| Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS04505 | UDP-N-acetyl-D-mannosamine dehydrogenase | +1.6 | |
| Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS04510 | UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) | +1.7 | |
| Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS04525 | multidrug MFS transporter | +1.3 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted | RPSI07_RS04660 | aspartate aminotransferase family protein | -1.6 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted | RPSI07_RS10280 | pilus assembly protein PilO | +2.0 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted | RPSI07_RS11150 | PAS domain-containing sensor histidine kinase | +1.6 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted | RPSI07_RS23605 | LysM peptidoglycan-binding domain-containing protein | +1.4 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS02545 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | -1.8 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS02550 | LysR family transcriptional regulator | -2.2 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS12650 | quinolinate synthase NadA | -1.6 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS16700 | 8-amino-7-oxononanoate synthase | -1.1 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS19095 | GTP 3',8-cyclase MoaA | -1.4 | |
| Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted | RPSI07_RS22850 | biotin synthase BioB | -1.3 | |
| Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct | RPSI07_RS02030 | TolC family protein | variable | |
| Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct | RPSI07_RS07635 | D-xylose ABC transporter substrate-binding protein | -1.3 | |
| Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct | RPSI07_RS19595 | AsnC family transcriptional regulator | +1.6 | |
| Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct | RPSI07_RS21690 | 3-hydroxyacyl-CoA dehydrogenase | +1.4 | |