Private Fitness
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Specific Phenotypes for
Variovorax sp. SCN45
in complex community experiments
Condition
Gene
Description
Fitness
Cons.
Community=Kojac gum; Passage=4
GFF2101
no description
-2.2
Community=Kojac gum; Passage=4
GFF5235
General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD)
+1.5
Community=Kojac gum; Passage=4
GFF6382
ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate)
-1.4
Community=Kojac gum; Passage=4
GFF6870
FIG00904791: hypothetical protein
-2.4
Community=Kojac gum; Passage=4
GFF6871
FIG00905613: hypothetical protein
-1.8
Community=Kojac gum; Passage=4
GFF6872
FIG00904907: hypothetical protein
-2.2
Community=Kojac gum; Passage=4
GFF7115
hypothetical protein
-1.5
Community=Kojac gum; Passage=4
GFF808
Polyhydroxyalkanoic acid synthase
-2.4
Community=Locust bean gum; Passage=4
GFF1007
Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22)
+1.3
Community=Locust bean gum; Passage=4
GFF199
Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA
-1.8
Community=Locust bean gum; Passage=4
GFF2658
3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)
-1.3
Community=Locust bean gum; Passage=4
GFF3243
Flavin containing amine oxidoreductase
-1.7
Community=Locust bean gum; Passage=4
GFF3409
Probable lipoprotein signal peptide
variable
Community=Locust bean gum; Passage=4
GFF4487
putative secreted protein
variable
Community=Locust bean gum; Passage=4
GFF5404
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
-1.4
Community=arabino-guar; Passage=4
GFF2201
hypothetical protein
+1.3
Community=arabino-guar; Passage=4
GFF3309
Beta-hexosaminidase (EC 3.2.1.52)
variable
Community=arabino-guar; Passage=4
GFF7358
Phenylacetate ABC transporter, permease protein 2
+1.2
Community=arabino-guar; Passage=4
GFF945
Excinuclease ABC subunit B
-1.3
Community=guar; Passage=4
GFF1663
Isocitrate lyase (EC 4.1.3.1)
variable
Community=guar; Passage=4
GFF5071
AmpG permease
-2.2