| Condition | Gene | Description | Fitness | Cons. |
|---|
| D-Alanine | PfGW456L13_120 | Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) | -1.4 | Yes |
| D-Alanine | PfGW456L13_121 | Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) | -1.3 | Yes |
| D-Alanine | PfGW456L13_122 | Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) | -1.2 | |
| D-Alanine | PfGW456L13_124 | Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) | -1.4 | |
| D-Alanine | PfGW456L13_1866 | Aminomethyltransferase (EC 2.1.2.10) (from data) | +1.2 | |
| D-Alanine | PfGW456L13_4332 | Flagellar synthesis regulator FleN | -1.9 | |
| D-Alanine | PfGW456L13_4606 | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | -1.8 | |
| D-Alanine | PfGW456L13_4608 | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | -1.7 | Yes |
| D-Alanine | PfGW456L13_4609 | Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) | -1.7 | Yes |
| D-Alanine | PfGW456L13_4611 | Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) | -1.8 | Yes |
| D-Alanine | PfGW456L13_4791 | Transposase and inactivated derivatives | +2.6 | |
| D-Fructose | PfGW456L13_1891 | DNA-binding response regulator GltR, controls specific porins for the entry of glucose | -1.5 | |
| D-Fructose | PfGW456L13_1894 | ABC transporter for D-Galactose and D-Glucose, periplasmic substrate-binding component (from data) | -1.6 | |
| D-Fructose | PfGW456L13_1895 | ABC transporter for D-Galactose and D-Glucose, permease component 1 (from data) | -1.4 | |
| D-Fructose | PfGW456L13_1900 | Phosphogluconate repressor HexR, RpiR family | +1.5 | |
| D-Fructose | PfGW456L13_2224 | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) | -1.5 | Yes |
| D-Fructose | PfGW456L13_2803 | Glyceraldehyde-3-phosphate dehydrogenase, putative | -1.7 | |
| D-Fructose | PfGW456L13_4001 | Polysaccharide export lipoprotein Wza | -2.0 | |
| D-Fructose | PfGW456L13_4002 | YjbF outer membrane lipoprotein | -2.1 | |
| D-Fructose | PfGW456L13_5073 | PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) | -3.9 | Yes |
| D-Fructose | PfGW456L13_5075 | Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) | -3.3 | Yes |
| D-Fructose | PfGW456L13_855 | Autolysis response regulater LytR | -1.9 | |
| D-Galactose | PfGW456L13_1891 | DNA-binding response regulator GltR, controls specific porins for the entry of glucose | -2.2 | |
| D-Galactose | PfGW456L13_1894 | ABC transporter for D-Galactose and D-Glucose, periplasmic substrate-binding component (from data) | -1.7 | Yes |
| D-Galactose | PfGW456L13_1895 | ABC transporter for D-Galactose and D-Glucose, permease component 1 (from data) | -2.0 | Yes |
| D-Galactose | PfGW456L13_1896 | ABC transporter for D-Galactose and D-Glucose, permease component 2 (from data) | -2.5 | |
| D-Galactose | PfGW456L13_1897 | ABC transporter for D-Galactose and D-Glucose, ATPase component (from data) | -1.9 | |
| D-Galactose | PfGW456L13_2119 | L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) | -4.6 | Yes |
| D-Galactose | PfGW456L13_2126 | 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) | -4.5 | Yes |
| D-Galactose | PfGW456L13_2128 | Galactonate dehydratase (EC 4.2.1.6) | -5.1 | Yes |
| D-Galactose | PfGW456L13_2130 | Hexuronate transporter | -3.2 | Yes |
| D-Galactose | PfGW456L13_3314 | D-galactono-lactonase (EC 3.1.1.-) (from data) | -2.3 | |
| D-Gluconic Acid sodium salt | PfGW456L13_2309 | FIG139991: Putative thiamine pyrophosphate-requiring enzyme | -2.2 | |
| D-Gluconic Acid sodium salt | PfGW456L13_2310 | FIG137594: Putative iron-regulated membrane protein | -2.8 | |
| D-Gluconic Acid sodium salt | PfGW456L13_4437 | Cytosine/purine/uracil/thiamine/allantoin permease family protein | +1.5 | |
| D-Glucosamine Hydrochloride | PfGW456L13_1925 | Gluconate utilization system Gnt-I transcriptional repressor | +12.0 | Yes |
| D-Glucosamine Hydrochloride | PfGW456L13_2867 | D-glucosaminate dehydratase (EC 4.3.1.9) (from data) | -1.2 | Yes |
| D-Glucose | PfGW456L13_2155 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | -1.2 | |
| D-Glucose | PfGW456L13_929 | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | -1.3 | |
| D-Mannose | PfGW456L13_1893 | N-acylglucosamine 2-epimerase (EC 5.1.3.8) | -2.8 | Yes |
| D-Mannose | PfGW456L13_2803 | Glyceraldehyde-3-phosphate dehydrogenase, putative | -1.7 | Yes |
| D-Mannose | PfGW456L13_3036 | Fructokinase (EC 2.7.1.4) (from data) | -3.6 | Yes |
| D-Mannose | PfGW456L13_3038 | mannitol 2-dehydrogenase (EC 1.1.1.67) (from data) | -2.9 | Yes |
| D-Mannose | PfGW456L13_3039 | Various polyols ABC transporter, ATP-binding component | -3.8 | Yes |
| D-Mannose | PfGW456L13_3040 | Various polyols ABC transporter, permease component 2 | -2.8 | Yes |
| D-Mannose | PfGW456L13_3041 | Various polyols ABC transporter, permease component 1 | -2.3 | Yes |
| D-Mannose | PfGW456L13_3042 | Various polyols ABC transporter, periplasmic substrate-binding protein | -3.1 | Yes |
| D-Mannose | PfGW456L13_3043 | hypothetical protein | -3.2 | |
| D-Mannose | PfGW456L13_3044 | Transcriptional regulator of various polyols utilization, AraC family | -3.3 | Yes |
| D-Mannose | PfGW456L13_5073 | PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) | -3.4 | Yes |
| D-Mannose | PfGW456L13_5075 | Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) | -4.4 | Yes |
| D-Mannose | PfGW456L13_855 | Autolysis response regulater LytR | -1.3 | |
| D-Serine | PfGW456L13_1142 | Protein rarD | -4.1 | |
| D-Serine | PfGW456L13_2348 | 2-Oxobutyrate oxidase, putative | +1.4 | |
| D-Serine | PfGW456L13_3647 | D-serine dehydratase transcriptional activator | -4.1 | Yes |
| D-Serine | PfGW456L13_3648 | D-serine ammonia-lyase (EC 4.3.1.18) (from data) | -4.3 | Yes |
| D-Serine | PfGW456L13_3649 | D-serine permease (from data) | -3.3 | Yes |
| D-Serine | PfGW456L13_4247 | NLP/P60 family protein | +1.1 | |
| D-Serine | PfGW456L13_4437 | Cytosine/purine/uracil/thiamine/allantoin permease family protein | +2.5 | |
| D-Serine | PfGW456L13_617 | FIG00953365: hypothetical protein | +2.1 | |
| Glycerol | PfGW456L13_1350 | Antiholin-like protein LrgA | -1.5 | Yes |
| Glycerol | PfGW456L13_1351 | LrgA-associated membrane protein LrgB | -1.8 | Yes |
| Glycerol | PfGW456L13_1900 | Phosphogluconate repressor HexR, RpiR family | +1.7 | |
| Glycerol | PfGW456L13_2173 | Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) | -1.3 | |
| Glycerol | PfGW456L13_2803 | Glyceraldehyde-3-phosphate dehydrogenase, putative | -1.5 | Yes |
| Glycerol | PfGW456L13_4555 | FIG00954264: hypothetical protein | -2.1 | |
| Glycerol | PfGW456L13_4556 | ThiJ/PfpI family protein | -2.1 | Yes |
| Glycerol | PfGW456L13_5114 | L-lactate permease | -1.3 | Yes |
| Glycerol | PfGW456L13_5115 | Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE | -1.9 | Yes |
| Glycerol | PfGW456L13_5116 | Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF | -1.3 | Yes |
| Glycerol | PfGW456L13_5118 | D-lactate dehydrogenase (quinone), FeS subunit (EC 1.1.5.12) (from data) | -2.3 | Yes |
| L-Arabinose | PfGW456L13_2118 | L-arabinolactonase (EC 3.1.1.15) (from data) | -3.1 | Yes |
| L-Arabinose | PfGW456L13_2119 | L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) | -2.0 | Yes |
| L-Arabinose | PfGW456L13_2120 | L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) | -1.4 | Yes |
| L-Arabinose | PfGW456L13_2121 | L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) | -1.4 | Yes |
| L-Arabinose | PfGW456L13_2122 | L-arabinose transport system permease protein (TC 3.A.1.2.2) | -1.8 | Yes |
| L-Arabinose | PfGW456L13_2126 | 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) | +5.7 | |
| L-Arabinose | PfGW456L13_2131 | D-galactonate regulator, IclR family | +5.2 | Yes |
| L-Arabinose | PfGW456L13_2504 | 4-oxalocrotonate decarboxylase (EC 4.1.1.77) | +1.7 | |
| L-Arabinose | PfGW456L13_3317 | 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) | -2.6 | Yes |
| L-Arabinose | PfGW456L13_3318 | Nitrate/nitrite transporter | -1.3 | Yes |
| L-Arabinose | PfGW456L13_3320 | L-arabonate dehydratase (EC 4.2.1.25) (from data) | -2.8 | Yes |
| L-Arabinose | PfGW456L13_3524 | FIG00443700: hypothetical protein | -2.1 | |
| L-Arabinose | PfGW456L13_3526 | ABC transporter permease protein | -1.9 | |
| L-Arabinose | PfGW456L13_3909 | Ribose operon repressor | +3.6 | |
| L-Arabinose | PfGW456L13_3985 | hypothetical protein | -1.6 | |
| L-Arabinose | PfGW456L13_4027 | Transcription-repair coupling factor | +2.1 | |
| L-Arabinose | PfGW456L13_4332 | Flagellar synthesis regulator FleN | -1.7 | |
| L-Arabinose | PfGW456L13_4355 | Flagellar regulatory protein FleQ | +1.3 | |
| L-Arabinose | PfGW456L13_5077 | Fructose repressor FruR, LacI family | +3.0 | |
| L-Asparagine | PfGW456L13_4770 | ABC transporter for L-Asparagine and possibly other L-amino acids, periplasmic substrate-binding component (from data) | -3.5 | Yes |
| L-Asparagine | PfGW456L13_4771 | ABC transporter for L-Asparagine and possibly other L-amino acids, permease component 1 (from data) | -3.1 | Yes |
| L-Asparagine | PfGW456L13_4772 | ABC transporter for L-Asparagine and possibly other L-amino acids, permease component 2 (from data) | -4.1 | Yes |
| L-Asparagine | PfGW456L13_4774 | Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3) | -3.3 | Yes |
| L-Asparagine | PfGW456L13_4775 | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | -3.9 | |
| L-Asparagine | PfGW456L13_740 | L-asparaginase (EC 3.5.1.1) (from data) | -3.0 | Yes |
| L-Glutamine | PfGW456L13_115 | Mannose-6-phosphate isomerase (EC 5.3.1.8) | +1.6 | Yes |
| L-Glutamine | PfGW456L13_4770 | ABC transporter for L-Asparagine and possibly other L-amino acids, periplasmic substrate-binding component (from data) | +3.9 | Yes |
| L-Glutamine | PfGW456L13_4771 | ABC transporter for L-Asparagine and possibly other L-amino acids, permease component 1 (from data) | +3.7 | Yes |
| L-Glutamine | PfGW456L13_4772 | ABC transporter for L-Asparagine and possibly other L-amino acids, permease component 2 (from data) | +3.7 | Yes |
| L-Glutamine | PfGW456L13_4774 | Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3) | +4.1 | Yes |
| L-Glutamine | PfGW456L13_4775 | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | +4.2 | Yes |
| L-Glutamine | PfGW456L13_741 | sodium/alanine transporter | -1.5 | Yes |
| L-Histidine | PfGW456L13_316 | N-formylglutamate deformylase (EC 3.5.1.68) (from data) | -5.7 | Yes |
| L-Histidine | PfGW456L13_317 | Imidazolonepropionase (EC 3.5.2.7) (from data) | -5.7 | Yes |
| L-Histidine | PfGW456L13_318 | Histidine transport protein (permease) | -3.5 | Yes |
| L-Histidine | PfGW456L13_320 | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | -5.7 | Yes |
| L-Histidine | PfGW456L13_322 | Histidine ABC transporter, ATP-binding protein (TC 3.A.1) | variable | Yes |
| L-Histidine | PfGW456L13_325 | Purine-cytosine permease | variable | Yes |
| L-Histidine | PfGW456L13_326 | Urocanate hydratase (EC 4.2.1.49) (from data) | -4.7 | Yes |
| L-Histidine | PfGW456L13_327 | hypothetical protein | -4.6 | |
| L-Histidine | PfGW456L13_330 | Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) | -6.5 | Yes |
| L-Histidine | PfGW456L13_567 | Glycine cleavage system transcriptional activator | -1.3 | Yes |
| L-Malic acid disodium salt monohydrate | PfGW456L13_2016 | C4-dicarboxylate transporter (from data) | variable | Yes |
| L-Malic acid disodium salt monohydrate | PfGW456L13_3524 | FIG00443700: hypothetical protein | -1.4 | |
| L-Malic acid disodium salt monohydrate | PfGW456L13_3526 | ABC transporter permease protein | variable | |
| L-Malic acid disodium salt monohydrate | PfGW456L13_400 | Signal transduction histidine kinase regulating C4-dicarboxylate transport system | variable | Yes |
| L-Malic acid disodium salt monohydrate | PfGW456L13_401 | C4-dicarboxylate transport transcriptional regulatory protein | variable | Yes |
| L-Phenylalanine | PfGW456L13_2108 | Aminodeoxychorismate lyase (EC 4.1.3.38) | -1.5 | |
| L-Phenylalanine | PfGW456L13_2244 | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) | -1.4 | Yes |
| L-Phenylalanine | PfGW456L13_2423 | Phenylacetate-CoA oxygenase/reductase, PaaK subunit | -1.1 | Yes |
| L-Phenylalanine | PfGW456L13_2427 | Phenylacetate-CoA oxygenase, PaaG subunit | -1.4 | Yes |
| L-Phenylalanine | PfGW456L13_2872 | Acetoacetyl-CoA synthetase (EC 6.2.1.16) | -3.5 | |
| L-Phenylalanine | PfGW456L13_2875 | Sigma-54 dependent transcriptional regulator | -3.1 | |
| L-Phenylalanine | PfGW456L13_2935 | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | -4.1 | Yes |
| L-Phenylalanine | PfGW456L13_3836 | Decarboxylase family protein | -1.3 | |
| L-Phenylalanine | PfGW456L13_3872 | Transcriptional regulator, AraC family | -1.4 | |
| L-Phenylalanine | PfGW456L13_4123 | Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) | -1.4 | Yes |
| L-Phenylalanine | PfGW456L13_4393 | Phenylalanine hydroxylase transcriptional activator PhhR | -3.4 | Yes |
| L-Phenylalanine | PfGW456L13_4394 | Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) | -3.4 | Yes |
| L-Phenylalanine | PfGW456L13_4396 | tyrosine aminotransferase (EC 2.6.1.57) (from data) | -2.9 | Yes |
| L-Phenylalanine | PfGW456L13_4591 | 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) | +1.5 | Yes |
| L-Phenylalanine | PfGW456L13_4592 | 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) | +1.3 | Yes |
| L-Phenylalanine | PfGW456L13_4962 | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) | -3.4 | Yes |
| L-Tryptophan | PfGW456L13_1745 | Alkyl hydroperoxide reductase subunit C-like protein | +1.5 | |
| L-Tryptophan | PfGW456L13_1970 | hypothetical protein | +2.0 | |
| L-Tryptophan | PfGW456L13_1971 | Succinylornithine transaminase (EC 2.6.1.81) | +1.8 | |
| L-Tryptophan | PfGW456L13_2114 | Molybdenum cofactor biosynthesis protein MoaA | -1.2 | |
| L-Tryptophan | PfGW456L13_2274 | Molybdopterin biosynthesis protein MoeA | -1.2 | |
| L-Tryptophan | PfGW456L13_2738 | electron transfer component of the anthranilate 1,2-dioxygenase system (EC 1.14.12.1) (from data) | -1.3 | Yes |
| L-Tryptophan | PfGW456L13_2739 | Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) | -1.8 | Yes |
| L-Tryptophan | PfGW456L13_2740 | Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) | -1.5 | Yes |
| L-Tryptophan | PfGW456L13_3822 | Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) | -2.1 | Yes |
| L-Tryptophan | PfGW456L13_3823 | Muconolactone isomerase (EC 5.3.3.4) (from data) | -2.8 | Yes |
| L-Tryptophan | PfGW456L13_408 | Formate dehydrogenase chain D (EC 1.2.1.2) | -1.0 | |
| L-Tryptophan | PfGW456L13_4264 | Branched-chain amino acid transport system carrier protein | +1.3 | |
| L-Tryptophan | PfGW456L13_4288 | Kynureninase (EC 3.7.1.3) (from data) | -3.6 | Yes |
| L-Tryptophan | PfGW456L13_4289 | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | -2.5 | Yes |
| L-Tryptophan | PfGW456L13_4291 | L-tryptophan transporter (from data) | -1.1 | |
| L-Tryptophan | PfGW456L13_4292 | Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) | -3.4 | Yes |
| L-Tryptophan | PfGW456L13_4293 | Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) | -2.8 | Yes |
| L-Tryptophan | PfGW456L13_4479 | Sialic acid transporter (permease) NanT | -1.2 | |
| L-Tryptophan | PfGW456L13_4579 | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | -1.7 | |
| L-Tryptophan | PfGW456L13_4589 | Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) | -3.2 | |
| L-Tryptophan | PfGW456L13_4592 | 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) | -3.9 | Yes |
| L-Tryptophan | PfGW456L13_4594 | Pca regulon regulatory protein PcaR | -4.2 | Yes |
| L-Tryptophan | PfGW456L13_600 | Zinc ABC transporter, inner membrane permease protein ZnuB | -2.1 | |
| L-Tryptophan | PfGW456L13_740 | L-asparaginase (EC 3.5.1.1) (from data) | +1.1 | |
| L-Tryptophan | PfGW456L13_902 | Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) | -1.8 | |
| L-Valine | PfGW456L13_2590 | Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) | -1.9 | Yes |
| L-Valine | PfGW456L13_2591 | Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) | -1.4 | Yes |
| L-Valine | PfGW456L13_2985 | isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) | -4.1 | Yes |
| L-Valine | PfGW456L13_2986 | 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) | -5.4 | Yes |
| L-Valine | PfGW456L13_3031 | Threonine dehydratase biosynthetic (EC 4.3.1.19) | -2.3 | Yes |
| L-Valine | PfGW456L13_3540 | branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) | -5.8 | Yes |
| L-Valine | PfGW456L13_3541 | branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) | -5.0 | Yes |
| L-Valine | PfGW456L13_3542 | Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) | -6.0 | Yes |
| L-Valine | PfGW456L13_3543 | Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) | -3.6 | Yes |
| L-Valine | PfGW456L13_4115 | 2-methylaconitate cis-trans isomerase | -5.8 | |
| L-Valine | PfGW456L13_4117 | 2-methylcitrate synthase (EC 2.3.3.5) | -5.6 | Yes |
| L-Valine | PfGW456L13_5145 | 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) | -5.0 | Yes |
| L-Valine | PfGW456L13_5146 | Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) | -4.8 | Yes |
| L-Valine | PfGW456L13_5147 | Transcriptional regulator, LysR family | -5.0 | Yes |
| L-Valine | PfGW456L13_554 | Glutaryl-CoA dehydrogenase (EC 1.3.99.7) | -1.3 | Yes |
| L-Valine | PfGW456L13_910 | Transcriptional regulator, AsnC family | -2.3 | Yes |
| Putrescine Dihydrochloride | PfGW456L13_1864 | FIG023103: Predicted transmembrane protein | -2.1 | |
| Putrescine Dihydrochloride | PfGW456L13_2229 | Universal stress protein family | -1.4 | |
| Putrescine Dihydrochloride | PfGW456L13_3987 | tRNA dihydrouridine synthase A | -1.1 | |
| Putrescine Dihydrochloride | PfGW456L13_4027 | Transcription-repair coupling factor | -1.8 | |
| Putrescine Dihydrochloride | PfGW456L13_4060 | hypothetical protein | -1.9 | |
| Putrescine Dihydrochloride | PfGW456L13_4065 | Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation | -1.5 | |
| Putrescine Dihydrochloride | PfGW456L13_805 | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) | -2.8 | Yes |
| Putrescine Dihydrochloride | PfGW456L13_925 | Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) | -2.9 | Yes |
| Putrescine Dihydrochloride | PfGW456L13_929 | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | -2.3 | Yes |
| Sodium D,L-Lactate | PfGW456L13_5114 | L-lactate permease | -3.4 | Yes |
| Sodium D,L-Lactate | PfGW456L13_5115 | Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE | -4.5 | Yes |
| Sodium D,L-Lactate | PfGW456L13_5116 | Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF | -4.1 | Yes |
| Sodium D-Lactate | PfGW456L13_1738 | Ferric iron ABC transporter, ATP-binding protein | -2.3 | |
| Sodium D-Lactate | PfGW456L13_2172 | S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase | -1.6 | |
| Sodium D-Lactate | PfGW456L13_5114 | L-lactate permease | -5.4 | Yes |
| Sodium D-Lactate | PfGW456L13_5115 | Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE | -6.2 | Yes |
| Sodium D-Lactate | PfGW456L13_5116 | Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF | -5.2 | Yes |
| Sodium D-Lactate | PfGW456L13_5118 | D-lactate dehydrogenase (quinone), FeS subunit (EC 1.1.5.12) (from data) | -5.0 | Yes |
| Sodium L-Lactate | PfGW456L13_2155 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | -1.3 | |
| Sodium L-Lactate | PfGW456L13_5114 | L-lactate permease | -5.0 | Yes |
| Sodium L-Lactate | PfGW456L13_5115 | Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE | -4.7 | Yes |
| Sodium L-Lactate | PfGW456L13_5116 | Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF | -5.2 | Yes |
| Sodium octanoate | PfGW456L13_1155 | Acyl-CoA dehydrogenase (EC 1.3.8.7) | +1.0 | |
| Sodium octanoate | PfGW456L13_1156 | Acyl-CoA dehydrogenase (EC 1.3.8.7) | -3.2 | Yes |
| Sodium octanoate | PfGW456L13_1362 | Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) | +1.9 | |
| Sodium octanoate | PfGW456L13_1369 | Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) | +1.8 | |
| Sodium octanoate | PfGW456L13_1385 | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | +1.7 | |
| Sodium octanoate | PfGW456L13_1430 | tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) | -1.5 | |
| Sodium octanoate | PfGW456L13_1494 | COG1496: Uncharacterized conserved protein | -1.1 | Yes |
| Sodium octanoate | PfGW456L13_1495 | ClpB protein | +1.0 | |
| Sodium octanoate | PfGW456L13_153 | GTP-binding protein HflX | +2.3 | |
| Sodium octanoate | PfGW456L13_1534 | FIG00955330: hypothetical protein | +2.4 | |
| Sodium octanoate | PfGW456L13_1601 | FIG00953775: hypothetical protein | -2.6 | |
| Sodium octanoate | PfGW456L13_1666 | LysR family transcriptional regulator QseA | +5.6 | Yes |
| Sodium octanoate | PfGW456L13_1667 | Outer membrane component of tripartite multidrug resistance system | -1.5 | |
| Sodium octanoate | PfGW456L13_179 | Putative esterase, FIGfam005057 | -1.7 | Yes |
| Sodium octanoate | PfGW456L13_1949 | Transcriptional regulator, TetR family | +3.8 | |
| Sodium octanoate | PfGW456L13_2 | Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) | -1.1 | |
| Sodium octanoate | PfGW456L13_2223 | Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | -2.8 | |
| Sodium octanoate | PfGW456L13_2227 | 2-dehydropantoate 2-reductase (EC 1.1.1.169) | -1.1 | |
| Sodium octanoate | PfGW456L13_225 | Methyl-accepting chemotaxis protein | -1.2 | |
| Sodium octanoate | PfGW456L13_2251 | hypothetical protein | -1.3 | |
| Sodium octanoate | PfGW456L13_229 | Na(+)/H(+) antiporter | -2.2 | |
| Sodium octanoate | PfGW456L13_2335 | Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) | +1.7 | |
| Sodium octanoate | PfGW456L13_2342 | SAM-dependent methyltransferases | +3.3 | |
| Sodium octanoate | PfGW456L13_2549 | Murein-DD-endopeptidase (EC 3.4.99.-) | +2.0 | |
| Sodium octanoate | PfGW456L13_2559 | Hydrolase, carbon-nitrogen family | +2.2 | |
| Sodium octanoate | PfGW456L13_2600 | Histone acetyltransferase HPA2 and related acetyltransferases | +1.5 | |
| Sodium octanoate | PfGW456L13_2798 | Putative TEGT family carrier/transport protein | -2.2 | |
| Sodium octanoate | PfGW456L13_3025 | Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO | -1.5 | Yes |
| Sodium octanoate | PfGW456L13_3162 | Ferrichrome-iron receptor | -1.1 | |
| Sodium octanoate | PfGW456L13_3298 | NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form | -2.8 | Yes |
| Sodium octanoate | PfGW456L13_3325 | Membrane alanine aminopeptidase N (EC 3.4.11.2) | +1.1 | Yes |
| Sodium octanoate | PfGW456L13_3341 | Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) | +3.6 | |
| Sodium octanoate | PfGW456L13_3342 | Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) | +1.4 | |
| Sodium octanoate | PfGW456L13_3344 | Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) | +1.7 | |
| Sodium octanoate | PfGW456L13_3345 | Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) | +1.4 | |
| Sodium octanoate | PfGW456L13_3538 | FIG146518: Zn-dependent hydrolases, including glyoxylases | -2.5 | |
| Sodium octanoate | PfGW456L13_377 | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) | -1.0 | |
| Sodium octanoate | PfGW456L13_4045 | Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) | +2.2 | |
| Sodium octanoate | PfGW456L13_4060 | hypothetical protein | +1.5 | |
| Sodium octanoate | PfGW456L13_4066 | Putative analog of CcoH, COG3198 | +2.0 | |
| Sodium octanoate | PfGW456L13_4091 | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | +1.5 | |
| Sodium octanoate | PfGW456L13_4110 | Ribonuclease E inhibitor RraA | -2.6 | Yes |
| Sodium octanoate | PfGW456L13_4111 | Esterase/lipase/thioesterase family protein | +2.0 | Yes |
| Sodium octanoate | PfGW456L13_4247 | NLP/P60 family protein | +2.3 | |
| Sodium octanoate | PfGW456L13_4281 | Nucleoside ABC transporter, periplasmic nucleoside-binding protein | -1.6 | |
| Sodium octanoate | PfGW456L13_4332 | Flagellar synthesis regulator FleN | -1.7 | |
| Sodium octanoate | PfGW456L13_4510 | Putative permease PerM (= YfgO) | -2.0 | Yes |
| Sodium octanoate | PfGW456L13_4579 | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | +5.0 | Yes |
| Sodium octanoate | PfGW456L13_4647 | Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) | -3.1 | Yes |
| Sodium octanoate | PfGW456L13_4678 | 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) | -2.1 | |
| Sodium octanoate | PfGW456L13_4770 | ABC transporter for L-Asparagine and possibly other L-amino acids, periplasmic substrate-binding component (from data) | -1.5 | |
| Sodium octanoate | PfGW456L13_4807 | ATP-dependent protease La (EC 3.4.21.53) Type I | -1.6 | |
| Sodium octanoate | PfGW456L13_4892 | FIG005548: transport protein | +1.3 | |
| Sodium octanoate | PfGW456L13_4894 | FIG002188: hypothetical protein | +1.4 | |
| Sodium octanoate | PfGW456L13_4895 | FIG067310: hypothetical protein | +1.0 | |
| Sodium octanoate | PfGW456L13_491 | Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) | +1.4 | |
| Sodium octanoate | PfGW456L13_4924 | Lysine 2,3-aminomutase (EC 5.4.3.2) | +1.6 | |
| Sodium octanoate | PfGW456L13_5049 | Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) | +3.4 | |
| Sodium octanoate | PfGW456L13_505 | HlyD family secretion protein | -3.1 | Yes |
| Sodium octanoate | PfGW456L13_506 | required for octanoate transport, together with NodT, MFP, and FUSC proteins (PfGW456L13_504, PfGW456L13_505, PfGW456L13_507) (from data) | -2.8 | Yes |
| Sodium octanoate | PfGW456L13_507 | Inner membrane component of tripartite multidrug resistance system | -3.2 | Yes |
| Sodium octanoate | PfGW456L13_508 | Transcriptional regulator, MarR family | -2.4 | Yes |
| Sodium octanoate | PfGW456L13_55 | tRNA dihydrouridine synthase B (EC 1.-.-.-) | +2.1 | |
| Sodium octanoate | PfGW456L13_553 | L-carnitine dehydratase/bile acid-inducible protein F | -1.6 | |
| Sodium octanoate | PfGW456L13_554 | Glutaryl-CoA dehydrogenase (EC 1.3.99.7) | -2.6 | |
| Sodium octanoate | PfGW456L13_577 | Fused spore maturation proteins A and B | -2.2 | Yes |
| Sodium octanoate | PfGW456L13_587 | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) | -2.1 | |
| Sodium octanoate | PfGW456L13_722 | putative membrane protein | -2.5 | |
| Sodium octanoate | PfGW456L13_873 | Porphobilinogen synthase (EC 4.2.1.24) | +2.2 | |
| Sodium octanoate | PfGW456L13_896 | Xaa-Pro aminopeptidase (EC 3.4.11.9) | +2.4 | |
| Sodium octanoate | PfGW456L13_902 | Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) | -1.8 | |
| Sodium octanoate | PfGW456L13_908 | Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB | +1.5 | |
| Sodium octanoate | PfGW456L13_911 | Adenylate cyclase (EC 4.6.1.1) | +2.1 | |
| Sodium octanoate | PfGW456L13_938 | FIG00953078: hypothetical protein | -1.6 | Yes |
| Sodium octanoate | PfGW456L13_941 | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | +1.2 | |
| Sodium octanoate | PfGW456L13_946 | Outer membrane protein assembly factor YaeT precursor | +2.3 | |
| Sodium octanoate | PfGW456L13_97 | membrane protein, putative | +5.8 | |
| Sodium octanoate | PfGW456L13_992 | FIG015547: peptidase, M16 family | -1.9 | |
| Sodium succinate dibasic hexahydrate | PfGW456L13_1900 | Phosphogluconate repressor HexR, RpiR family | -1.9 | |
| Sodium succinate dibasic hexahydrate | PfGW456L13_2016 | C4-dicarboxylate transporter (from data) | -3.3 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_1354 | DedA protein | -4.0 | |
| Trisodium citrate dihydrate | PfGW456L13_1440 | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | -3.0 | |
| Trisodium citrate dihydrate | PfGW456L13_1688 | Predicted ATPase related to phosphate starvation-inducible protein PhoH | -1.2 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_2182 | regulator of length of O-antigen component of lipopolysaccharide chains | -2.7 | |
| Trisodium citrate dihydrate | PfGW456L13_2256 | sensor histidine kinase/response regulator | -2.4 | |
| Trisodium citrate dihydrate | PfGW456L13_2290 | Acyclic terpenes utilization regulator AtuR, TetR family | -1.2 | |
| Trisodium citrate dihydrate | PfGW456L13_2303 | ABC transporter in pyoverdin gene cluster, periplasmic component | -4.8 | |
| Trisodium citrate dihydrate | PfGW456L13_2304 | ABC transporter in pyoverdin gene cluster, permease component | -5.7 | |
| Trisodium citrate dihydrate | PfGW456L13_2305 | ABC transporter in pyoverdin gene cluster, ATP-binding component | -5.4 | |
| Trisodium citrate dihydrate | PfGW456L13_2306 | FIG014801: Cation ABC transporter, periplasmic cation-binding protein | -6.2 | |
| Trisodium citrate dihydrate | PfGW456L13_2307 | FIG049111: Hypothetical protein in pyoverdin gene cluster | -5.8 | |
| Trisodium citrate dihydrate | PfGW456L13_2308 | FIG137877: Hypothetical protein in pyoverdin gene cluster | -4.1 | |
| Trisodium citrate dihydrate | PfGW456L13_2309 | FIG139991: Putative thiamine pyrophosphate-requiring enzyme | -4.6 | |
| Trisodium citrate dihydrate | PfGW456L13_2384 | TonB-dependent siderophore receptor | -5.2 | |
| Trisodium citrate dihydrate | PfGW456L13_2862 | Bacteriophage N4 adsorption protein A | -1.0 | |
| Trisodium citrate dihydrate | PfGW456L13_3547 | Cobalt-zinc-cadmium resistance protein CzcD | -6.1 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_3985 | hypothetical protein | -1.8 | |
| Trisodium citrate dihydrate | PfGW456L13_4514 | Sigma factor RpoE negative regulatory protein RseB precursor | -1.4 | |
| Trisodium citrate dihydrate | PfGW456L13_4516 | RNA polymerase sigma-H factor AlgT | +1.4 | |
| Trisodium citrate dihydrate | PfGW456L13_4523 | Tricarboxylate transport sensor protein TctE | -2.3 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_4524 | Tricarboxylate transport transcriptional regulator TctD | -5.3 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_4525 | Tricarboxylate porin OpdH | -1.9 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_4526 | Tricarboxylate transport protein TctC | -4.4 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_4527 | tricarboxylate transporter component TctB (from data) | -3.3 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_4528 | Tricarboxylate transport membrane protein TctA | -3.1 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_634 | Integral membrane protein TerC | -1.6 | |
| Trisodium citrate dihydrate | PfGW456L13_635 | Uncharacterized transporter, similarity to citrate transporter | -2.2 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_883 | O-antigen acetylase | +1.0 | |
| Trisodium citrate dihydrate | PfGW456L13_958 | Cd(II)/Pb(II)-responsive transcriptional regulator | -5.0 | Yes |
| Trisodium citrate dihydrate | PfGW456L13_959 | Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) | -6.1 | Yes |
| Tween 20 | PfGW456L13_1156 | Acyl-CoA dehydrogenase (EC 1.3.8.7) | -2.5 | Yes |
| Tween 20 | PfGW456L13_1621 | FIG002188: hypothetical protein | -1.0 | Yes |
| Tween 20 | PfGW456L13_2016 | C4-dicarboxylate transporter (from data) | -2.3 | |
| Tween 20 | PfGW456L13_3322 | FIG005548: transport protein | variable | Yes |
| Tween 20 | PfGW456L13_3570 | FIG00960995: hypothetical protein | variable | |
| Tween 20 | PfGW456L13_400 | Signal transduction histidine kinase regulating C4-dicarboxylate transport system | -1.5 | |
| Tween 20 | PfGW456L13_401 | C4-dicarboxylate transport transcriptional regulatory protein | -2.5 | |
| Tween 20 | PfGW456L13_4110 | Ribonuclease E inhibitor RraA | -1.6 | |
| Tween 20 | PfGW456L13_4468 | Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) | -1.5 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | PfGW456L13_1805 | Dicarboxylate MFS transporter | -3.9 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | PfGW456L13_1806 | Nitrogen regulation protein NR(I) | -4.8 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | PfGW456L13_1807 | C4-dicarboxylate transport sensor protein | -4.5 | Yes |