Specific Phenotypes for Pseudomonas simiae WCS417 in carbon source experiments

Condition Gene Description Fitness Cons.
2'-Deoxyinosine PS417_07260 2-deoxy-D-ribonate transporter 2 (from data) -1.8  
2'-Deoxyinosine PS417_08425 acetyltransferase +2.1  
2'-Deoxyinosine PS417_08805 hydroxypyruvate isomerase -1.9  
2'-Deoxyinosine PS417_08810 glyoxylate carboligase (EC 4.1.1.47) (from data) -2.9  
2'-Deoxyinosine PS417_08825 TetR family transcriptional regulator +5.3  
2'-Deoxyinosine PS417_19395 guanine permease -2.6  
2'-Deoxyinosine PS417_20885 Xanthine dehydrogenase (EC 1.17.1.4) (from data) -3.3  
2'-Deoxyinosine PS417_20890 Xanthine dehydrogenase (EC 1.17.1.4) (from data) -2.8  
2'-Deoxyinosine PS417_20895 molybdenum cofactor sulfurylase -2.8  
2'-Deoxyinosine PS417_21395 radical SAM protein -3.8  
2'-Deoxyinosine PS417_22500 porin -1.2  
2'-Deoxyinosine PS417_02375 hypothetical protein -1.8  
2'-Deoxyinosine PS417_24100 transcriptional regulator PdhR -1.8  
2-Deoxy-D-Ribose PS417_07240 Transcriptional regulator of deoxyribose catabolism (from data) -5.7  
2-Deoxy-D-Ribose PS417_07245 2-deoxy-D-ribonate 3-dehydrogenase (from data) -6.4  
2-Deoxy-D-Ribose PS417_07250 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) -6.9 Yes
2-Deoxy-D-Ribose PS417_07255 Deoxyribonolactonase (from data) -6.3 Yes
2-Deoxy-D-Ribose PS417_07260 2-deoxy-D-ribonate transporter 2 (from data) -5.4  
2-Deoxy-D-Ribose PS417_07265 2-deoxy-D-ribonate transporter 1 (from data) -4.5  
2-Deoxy-D-Ribose PS417_08675 molybdenum cofactor biosynthesis protein MoaA -1.9  
2-Deoxy-D-Ribose PS417_10515 acetyl-CoA acetyltransferase -1.9  
2-Deoxy-D-Ribose PS417_10880 cytochrome c component of deoxyribose dehydrogenase (from data) -1.9  
2-Deoxy-D-Ribose PS417_10885 Deoxyribose 1-dehydrogenase, beta subunit (from data) -4.7  
2-Deoxy-D-Ribose PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit (from data) -4.8  
2-Deoxy-D-Ribose PS417_13295 TetR family transcriptional regulator -1.5  
2-Deoxy-D-Ribose PS417_13970 glycerate kinase -4.2 Yes
2-Deoxy-D-Ribose PS417_13975 CdaR family transcriptional regulator -5.5  
2-Deoxy-D-Ribose PS417_21030 GntR family transcriptional regulator variable  
2-Deoxy-D-Ribose PS417_21395 radical SAM protein -3.9  
2-Deoxy-D-Ribose PS417_21490 molybdopterin-guanine dinucleotide biosynthesis protein MobA -4.5  
2-Deoxy-D-Ribose PS417_22670 AraC family transcriptional regulator -1.6  
2-Deoxy-D-Ribose PS417_00445 histidine kinase -1.1  
2-Deoxy-D-ribonic acid lithium salt PS417_05575 Glycerol kinase (EC 2.7.1.30) (from data) variable  
2-Deoxy-D-ribonic acid lithium salt PS417_05580 glycerol uptake facilitator GlpF -1.9  
2-Deoxy-D-ribonic acid lithium salt PS417_07240 Transcriptional regulator of deoxyribose catabolism (from data) -4.1  
2-Deoxy-D-ribonic acid lithium salt PS417_07250 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) -4.4  
2-Deoxy-D-ribonic acid lithium salt PS417_07255 Deoxyribonolactonase (from data) -2.9  
2-Deoxy-D-ribonic acid lithium salt PS417_07260 2-deoxy-D-ribonate transporter 2 (from data) -3.8  
2-Deoxy-D-ribonic acid lithium salt PS417_07265 2-deoxy-D-ribonate transporter 1 (from data) -3.3 Yes
2-Deoxy-D-ribonic acid lithium salt PS417_10515 acetyl-CoA acetyltransferase -3.8 Yes
2-Deoxy-D-ribonic acid lithium salt PS417_10520 succinyl-CoA:3-ketoacid-CoA transferase -2.7  
2-Deoxy-D-ribonic acid lithium salt PS417_10530 LysR family transcriptional regulator -1.8  
2-Deoxy-D-ribonic acid lithium salt PS417_13970 glycerate kinase -3.9  
2-Deoxy-D-ribonic acid lithium salt PS417_13975 CdaR family transcriptional regulator -3.7  
2-Deoxy-D-ribonic acid lithium salt PS417_22960 hypothetical protein -5.2  
2-Deoxy-D-ribonic acid lithium salt PS417_24465 metallopeptidase variable  
D-Alanine PS417_05405 L-alanine and D-alanine permease (from data) -1.8 Yes
D-Alanine PS417_21020 phosphoenolpyruvate synthase -1.5 Yes
D-Alanine PS417_27710 AsnC family transcriptional regulator -3.1 Yes
D-Fructose PS417_22695 glyceraldehyde-3-phosphate dehydrogenase -2.0  
D-Fructose PS417_03965 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) -4.2 Yes
D-Fructose PS417_03975 FruA -4.4 Yes
D-Galactose PS417_00165 galactonate dehydratase -3.7 Yes
D-Galacturonic Acid monohydrate PS417_17360 D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) -2.3 Yes
D-Galacturonic Acid monohydrate PS417_17365 galactaro-1,5-lactonase (from data) -1.7 Yes
D-Galacturonic Acid monohydrate PS417_04195 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) -2.9 Yes
D-Galacturonic Acid monohydrate PS417_04200 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data) -2.3 Yes
D-Galacturonic Acid monohydrate PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) -2.0 Yes
D-Galacturonic Acid monohydrate PS417_04210 Galactarate dehydratase (EC 4.2.1.42) (from data) -1.6 Yes
D-Gluconic Acid sodium salt PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) -3.4 Yes
D-Gluconic Acid sodium salt PS417_21980 permease DsdX -1.3  
D-Gluconic Acid sodium salt PS417_25990 malonyl-CoA O-methyltransferase -1.9  
D-Gluconic Acid sodium salt PS417_26000 8-amino-7-oxononanoate synthase -1.9  
D-Gluconic Acid sodium salt PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -1.9  
D-Glucosamine Hydrochloride PS417_12095 ABC transporter substrate-binding protein -2.0 Yes
D-Glucosamine Hydrochloride PS417_12100 amino acid ABC transporter permease -1.8 Yes
D-Glucosamine Hydrochloride PS417_12105 ABC transporter permease -2.0 Yes
D-Glucosamine Hydrochloride PS417_12125 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) -3.4 Yes
D-Glucosamine Hydrochloride PS417_15380 hypothetical protein -1.9  
D-Glucosamine Hydrochloride PS417_21150 HAD family hydrolase -1.8 Yes
D-Glucosamine Hydrochloride PS417_22130 glucose/xylose ABC transporter, ATPase component (from data) +8.1 Yes
D-Glucosamine Hydrochloride PS417_22135 glucose/xylose ABC transporter, permease component 1 (from data) +7.9 Yes
D-Glucosamine Hydrochloride PS417_22140 glucose/xylose ABC transporter, permease component 2 (from data) +8.0 Yes
D-Glucosamine Hydrochloride PS417_22145 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) +8.3 Yes
D-Glucosamine Hydrochloride PS417_22675 histidine kinase +2.6 Yes
D-Glucosamine Hydrochloride PS417_22680 chemotaxis protein CheY +8.0 Yes
D-Glucose PS417_21980 permease DsdX -1.7  
D-Glucose PS417_25990 malonyl-CoA O-methyltransferase variable  
D-Glucose PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -1.4 Yes
D-Glucose-6-Phosphate sodium salt PS417_05240 Lon protease +4.2  
D-Glucose-6-Phosphate sodium salt PS417_17420 ethanol oxidation regulatory protein ercA (from data) -1.7  
D-Glucose-6-Phosphate sodium salt PS417_17435 dehydrogenase -1.6  
D-Glucose-6-Phosphate sodium salt PS417_17480 branched-chain amino acid ABC transporter substrate-binding protein -1.7  
D-Glucose-6-Phosphate sodium salt PS417_17485 membrane protein -2.1  
D-Glucose-6-Phosphate sodium salt PS417_21030 GntR family transcriptional regulator -1.7  
D-Glucose-6-Phosphate sodium salt PS417_22130 glucose/xylose ABC transporter, ATPase component (from data) -3.8  
D-Glucose-6-Phosphate sodium salt PS417_22135 glucose/xylose ABC transporter, permease component 1 (from data) -3.8  
D-Glucose-6-Phosphate sodium salt PS417_22140 glucose/xylose ABC transporter, permease component 2 (from data) -3.4  
D-Glucose-6-Phosphate sodium salt PS417_22145 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) -3.2  
D-Glucose-6-Phosphate sodium salt PS417_22675 histidine kinase -3.1  
D-Glucose-6-Phosphate sodium salt PS417_22680 chemotaxis protein CheY -3.2  
D-Glucose-6-Phosphate sodium salt PS417_22685 Glucokinase (EC 2.7.1.2) (from data) -4.1 Yes
D-Glucose-6-Phosphate sodium salt PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF -1.5  
D-Glucose-6-Phosphate sodium salt PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC -1.7  
D-Glucose-6-Phosphate sodium salt PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE -1.6  
D-Mannitol PS417_12690 xylulose kinase -5.0 Yes
D-Mannitol PS417_12700 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) -5.1 Yes
D-Mannitol PS417_12705 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) -3.7 Yes
D-Mannitol PS417_12710 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) -4.9 Yes
D-Mannitol PS417_12715 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) -3.7 Yes
D-Mannitol PS417_12725 AraC family transcriptional regulator -4.9 Yes
D-Mannose PS417_11430 EamA -1.7  
D-Mannose PS417_12690 xylulose kinase -3.3  
D-Mannose PS417_12705 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) -2.2 Yes
D-Mannose PS417_12710 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) -2.4 Yes
D-Mannose PS417_12715 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) -2.1 Yes
D-Mannose PS417_12725 AraC family transcriptional regulator -2.9 Yes
D-Mannose PS417_22150 D-mannose isomerase (EC 5.3.1.7) (from data) -3.5 Yes
D-Mannose PS417_22695 glyceraldehyde-3-phosphate dehydrogenase -1.8  
D-Mannose PS417_03965 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) -4.1 Yes
D-Mannose PS417_03975 FruA -3.4 Yes
D-Sorbitol PS417_11520 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) -6.0 Yes
D-Sorbitol PS417_12690 xylulose kinase -3.3 Yes
D-Sorbitol PS417_12700 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) -3.7 Yes
D-Sorbitol PS417_12705 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) -3.5 Yes
D-Sorbitol PS417_12710 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) -5.1 Yes
D-Sorbitol PS417_12715 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) -3.5 Yes
D-Sorbitol PS417_03975 FruA -1.3  
D-Trehalose dihydrate PS417_22685 Glucokinase (EC 2.7.1.2) (from data) -3.6 Yes
D-Trehalose dihydrate PS417_22695 glyceraldehyde-3-phosphate dehydrogenase -2.7  
D-Trehalose dihydrate PS417_23035 D-trehalose PTS system, I, HPr, and IIA components (from data) -3.9 Yes
D-Trehalose dihydrate PS417_23040 D-trehalose outer membrane porin (from data) -3.6 Yes
D-Trehalose dihydrate PS417_23045 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) -5.4 Yes
D-Trehalose dihydrate PS417_23050 trehalose PTS system, EII-BC components TreB (from data) -4.1 Yes
D-Trehalose dihydrate PS417_28100 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) -1.3 Yes
D-Xylose PS417_10945 Xylose isomerase (EC 5.3.1.5) (from data) -3.2 Yes
D-Xylose PS417_10950 AraC family transcriptional regulator -3.0 Yes
D-Xylose PS417_12690 xylulose kinase -3.1 Yes
D-Xylose PS417_22130 glucose/xylose ABC transporter, ATPase component (from data) -2.2 Yes
D-Xylose PS417_22135 glucose/xylose ABC transporter, permease component 1 (from data) -1.6 Yes
D-Xylose PS417_22140 glucose/xylose ABC transporter, permease component 2 (from data) -1.8 Yes
D-Xylose PS417_22145 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) -1.8 Yes
D-Xylose PS417_22675 histidine kinase -1.3  
D-Xylose PS417_22680 chemotaxis protein CheY -1.9  
Deoxyribonucleic acid from herring sperm PS417_08035 adenine transporter (MFS superfamily) (from data) -1.2  
Deoxyribonucleic acid from herring sperm PS417_00830 hypothetical protein -1.9  
Deoxyribonucleic acid from herring sperm PS417_08675 molybdenum cofactor biosynthesis protein MoaA -2.0  
Deoxyribonucleic acid from herring sperm PS417_08805 hydroxypyruvate isomerase variable  
Deoxyribonucleic acid from herring sperm PS417_08810 glyoxylate carboligase (EC 4.1.1.47) (from data) -1.7 Yes
Deoxyribonucleic acid from herring sperm PS417_11530 amidase -2.2  
Deoxyribonucleic acid from herring sperm PS417_14005 4-hydroxyphenylpyruvate dioxygenase -1.0  
Deoxyribonucleic acid from herring sperm PS417_19420 OHCU decarboxylase -2.8 Yes
Deoxyribonucleic acid from herring sperm PS417_19435 urate hydroxylase (1.7.3.3) (from data) -1.8 Yes
Deoxyribonucleic acid from herring sperm PS417_20885 Xanthine dehydrogenase (EC 1.17.1.4) (from data) -2.4 Yes
Deoxyribonucleic acid from herring sperm PS417_20890 Xanthine dehydrogenase (EC 1.17.1.4) (from data) -1.9 Yes
Deoxyribonucleic acid from herring sperm PS417_20895 molybdenum cofactor sulfurylase -2.2  
Deoxyribonucleic acid from herring sperm PS417_20900 guanine deaminase -1.1 Yes
Deoxyribonucleic acid from herring sperm PS417_21395 radical SAM protein -2.6  
Deoxyribonucleic acid from herring sperm PS417_22845 membrane protein variable  
Deoxyribonucleic acid from herring sperm PS417_23250 S-adenosylmethionine tRNA ribosyltransferase -1.5  
Deoxyribonucleic acid from herring sperm PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC -1.4  
Deoxyribonucleic acid from herring sperm PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE -1.5  
Deoxyribonucleic acid from herring sperm PS417_03205 adenine deaminase -1.6 Yes
Ethanol PS417_17420 ethanol oxidation regulatory protein ercA (from data) -5.1 Yes
Ethanol PS417_17425 hypothetical protein -2.9  
Ethanol PS417_17435 dehydrogenase -2.5 Yes
Ethanol PS417_17450 amino acid ABC transporter substrate-binding protein -2.6 Yes
Ethanol PS417_17460 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) -2.3 Yes
Ethanol PS417_17475 histidine kinase -1.7 Yes
Ethanol PS417_17480 branched-chain amino acid ABC transporter substrate-binding protein -2.5 Yes
Ethanol PS417_17485 membrane protein -2.8 Yes
Ethanol PS417_17495 multidrug ABC transporter permease -2.6 Yes
Ethanol PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF -2.5 Yes
Ethanol PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC -2.9 Yes
Ethanol PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE -3.3 Yes
Ethanol PS417_04860 ATPase -1.7  
Gly-Glu PS417_06140 cold-shock protein +2.2  
Gly-Glu PS417_11405 precorrin 6A synthase -1.4  
Gly-Glu PS417_17420 ethanol oxidation regulatory protein ercA (from data) -4.4  
Gly-Glu PS417_17425 hypothetical protein -3.9  
Gly-Glu PS417_17435 dehydrogenase -3.9  
Gly-Glu PS417_17450 amino acid ABC transporter substrate-binding protein -5.2  
Gly-Glu PS417_17480 branched-chain amino acid ABC transporter substrate-binding protein -6.1  
Gly-Glu PS417_17485 membrane protein -4.1  
Gly-Glu PS417_17495 multidrug ABC transporter permease -3.6  
Gly-Glu PS417_17510 histidine kinase -1.7  
Gly-Glu PS417_17515 GfdT protein -2.0  
Gly-Glu PS417_01780 proline iminopeptidase +1.3  
Gly-Glu PS417_19160 hypothetical protein -1.6  
Gly-Glu PS417_19965 histidine kinase -2.7 Yes
Gly-Glu PS417_21030 GntR family transcriptional regulator -2.2  
Gly-Glu PS417_22355 glycine cleavage system protein H -2.3  
Gly-Glu PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) -3.1 Yes
Gly-Glu PS417_22370 Aminomethyltransferase (EC 2.1.2.10) (from data) -2.2  
Gly-Glu PS417_22500 porin -2.5  
Gly-Glu PS417_24100 transcriptional regulator PdhR -3.6  
Gly-Glu PS417_24570 AsnC family transcriptional regulator +1.9  
Gly-Glu PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF -4.2  
Gly-Glu PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC -3.9  
Gly-Glu PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE -5.9  
Gly-Glu PS417_26760 oxidase -1.7  
Gly-Glu PS417_04005 ornithine decarboxylase +1.5  
Gly-Glu PS417_04055 peptide transporter -4.0 Yes
Gly-Glu PS417_04060 dipeptide ABC transporter, permease component (from data) -3.1 Yes
Gly-Glu PS417_04070 porin -3.9  
Gly-Glu PS417_04075 peptide ABC transporter substrate-binding protein -3.2  
Gly-Glu PS417_00445 histidine kinase -1.3  
Glycerol PS417_05575 Glycerol kinase (EC 2.7.1.30) (from data) -4.6 Yes
Glycerol PS417_05580 glycerol uptake facilitator GlpF -2.6 Yes
Glycerol PS417_22695 glyceraldehyde-3-phosphate dehydrogenase -2.1 Yes
Inosine PS417_08675 molybdenum cofactor biosynthesis protein MoaA -2.5  
Inosine PS417_08805 hydroxypyruvate isomerase -3.9 Yes
Inosine PS417_08810 glyoxylate carboligase (EC 4.1.1.47) (from data) -3.0 Yes
Inosine PS417_19395 guanine permease -1.9 Yes
Inosine PS417_19420 OHCU decarboxylase -4.7 Yes
Inosine PS417_19430 ureidoglycolate hydrolase -2.3 Yes
Inosine PS417_19435 urate hydroxylase (1.7.3.3) (from data) -2.0 Yes
Inosine PS417_20885 Xanthine dehydrogenase (EC 1.17.1.4) (from data) -2.4 Yes
Inosine PS417_20890 Xanthine dehydrogenase (EC 1.17.1.4) (from data) -2.3 Yes
Inosine PS417_20895 molybdenum cofactor sulfurylase -2.4 Yes
Inosine PS417_21395 radical SAM protein -3.1  
L-Alanine PS417_05405 L-alanine and D-alanine permease (from data) -3.3 Yes
L-Alanine PS417_06165 thiamine biosynthesis protein ThiF -1.8  
L-Alanine PS417_06175 cysteine sulfinate desulfinase -1.8  
L-Alanine PS417_08920 branched-chain amino acid ABC transporter substrate-binding protein +1.2 Yes
L-Alanine PS417_21020 phosphoenolpyruvate synthase -1.4 Yes
L-Alanine PS417_27710 AsnC family transcriptional regulator -4.3 Yes
L-Arabinose PS417_11000 L-arabonate dehydratase (EC 4.2.1.25) (from data) -5.1 Yes
L-Arabinose PS417_11005 L-arabinose transporter (from data) -2.8 Yes
L-Arabinose PS417_11010 FAH family protein -4.6 Yes
L-Arabinose PS417_11015 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) -4.1 Yes
L-Arabinose PS417_11020 L-arabinolactonase (EC 3.1.1.15) (from data) -2.2 Yes
L-Arabinose PS417_11025 sugar ABC transporter substrate-binding protein -1.3 Yes
L-Arabinose PS417_11030 L-arabinose transporter ATP-binding protein -1.9 Yes
L-Arabinose PS417_11045 3-oxoacyl-ACP reductase -2.6 Yes
L-Arabinose PS417_21020 phosphoenolpyruvate synthase -2.7  
L-Arabinose PS417_27105 spermidine/putrescine ABC transporter permease -1.5  
L-Arginine PS417_17420 ethanol oxidation regulatory protein ercA (from data) -1.8  
L-Arginine PS417_17460 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) -1.4  
L-Arginine PS417_17475 histidine kinase -1.2  
L-Arginine PS417_21710 Succinylornithine transaminase (EC 2.6.1.81) (from data) -4.1 Yes
L-Arginine PS417_21735 ABC transporter for L-Arginine, permease component 2 (from data) -2.8 Yes
L-Arginine PS417_21740 ABC transporter for L-Arginine, permease component 1 (from data) -3.5 Yes
L-Arginine PS417_21745 ABC transporter for L-Arginine, substrate-binding component (from data) -3.8 Yes
L-Arginine PS417_27140 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) -1.7 Yes
L-Citrulline PS417_08105 N-ethylammeline chlorohydrolase -1.1  
L-Citrulline PS417_14920 CoA-transferase variable  
L-Citrulline PS417_01490 ABC transporter permease -1.2  
L-Citrulline PS417_17420 ethanol oxidation regulatory protein ercA (from data) -1.9  
L-Citrulline PS417_17460 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) variable  
L-Citrulline PS417_17475 histidine kinase variable  
L-Citrulline PS417_17580 citrulline utilization hydrolase (from data) -4.8 Yes
L-Citrulline PS417_17585 ornithine cyclodeaminase -3.8 Yes
L-Citrulline PS417_17595 amino acid ABC transporter permease variable  
L-Citrulline PS417_17600 amino acid ABC transporter permease variable  
L-Citrulline PS417_17605 amino acid transporter variable Yes
L-Citrulline PS417_02690 N-acylglucosamine 2-epimerase -1.6  
L-Glutamine PS417_05540 histidine kinase +2.0 Yes
L-Glutamine PS417_05545 amino acid ABC transporter ATP-binding protein +2.9 Yes
L-Glutamine PS417_05550 amino acid ABC transporter permease +2.8 Yes
L-Glutamine PS417_05555 amino acid ABC transporter permease +2.9 Yes
L-Glutamine PS417_21020 phosphoenolpyruvate synthase -1.4 Yes
L-Glutamine PS417_22495 histidine triad (HIT) protein +2.6  
L-Glutamine PS417_02690 N-acylglucosamine 2-epimerase +2.1 Yes
L-Glutamine PS417_28135 sodium:alanine symporter +1.1 Yes
L-Glutamine PS417_00470 glutamate:protein symporter +1.3 Yes
L-Histidine PS417_01705 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) -5.6 Yes
L-Histidine PS417_01720 Urocanate hydratase (EC 4.2.1.49) (from data) -4.2 Yes
L-Histidine PS417_00190 LysR family transcriptional regulator -1.7 Yes
L-Histidine PS417_23690 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) -1.3  
L-Isoleucine PS417_10535 hypothetical protein -1.5  
L-Isoleucine PS417_11430 EamA -1.9  
L-Isoleucine PS417_13180 AraC family transcriptional regulator -6.7 Yes
L-Isoleucine PS417_13850 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) -5.7 Yes
L-Isoleucine PS417_17550 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) -6.3 Yes
L-Isoleucine PS417_17560 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) -4.9 Yes
L-Isoleucine PS417_21275 GntR family transcriptional regulator -2.2 Yes
L-Leucine PS417_17015 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) -3.9 Yes
L-Leucine PS417_17550 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) -5.3 Yes
L-Leucine PS417_17560 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) -2.8 Yes
L-Leucine PS417_21010 ribonuclease activity regulator protein RraA -1.7  
L-Leucine PS417_24100 transcriptional regulator PdhR -3.4  
L-Leucine PS417_03730 phosphate acetyltransferase -1.7 Yes
L-Malic acid disodium salt monohydrate PS417_04425 histidinol-phosphate aminotransferase -1.5  
L-Ornithine PS417_17580 citrulline utilization hydrolase (from data) -5.5 Yes
L-Ornithine PS417_17585 ornithine cyclodeaminase -3.6 Yes
L-Ornithine PS417_17595 amino acid ABC transporter permease -3.2  
L-Ornithine PS417_17600 amino acid ABC transporter permease -3.7  
L-Ornithine PS417_17605 amino acid transporter -3.8 Yes
L-Ornithine PS417_21710 Succinylornithine transaminase (EC 2.6.1.81) (from data) -1.9 Yes
L-Tryptophan PS417_06690 IclR family transcriptional regulator -3.4 Yes
L-Tryptophan PS417_06700 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) -3.8 Yes
L-Tryptophan PS417_06705 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) -3.2 Yes
L-Tryptophan PS417_23650 Kynureninase (EC 3.7.1.3) (from data) -5.0 Yes
L-Tryptophan PS417_23655 AsnC family transcriptional regulator -3.9 Yes
L-Tryptophan PS417_23660 Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) -3.1 Yes
L-Tryptophan PS417_23665 Muconolactone isomerase (EC 5.3.3.4) (from data) -4.0 Yes
L-Tryptophan PS417_23670 Muconate cycloisomerase (EC 5.5.1.1) (from data) -2.8  
L-Tryptophan PS417_23675 transcriptional regulator -3.1  
L-Tryptophan PS417_23680 AraC family transcriptional regulator -3.1  
L-Tryptophan PS417_23685 anthranilate 1,2-dioxygenase (deaminating, decarboxylating) large subunit [EC: 1.14.12.1] (from data) -3.4 Yes
L-Tryptophan PS417_23690 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) -3.1 Yes
L-Tryptophan PS417_23695 electron transfer component of the anthranilate 1,2-dioxygenase system (EC 1.14.12.1) (from data) -3.2 Yes
L-Tryptophan PS417_23705 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) -4.9 Yes
L-Tryptophan PS417_23710 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) -5.2 Yes
L-Tryptophan PS417_27710 AsnC family transcriptional regulator -2.9 Yes
L-Tryptophan PS417_04425 histidinol-phosphate aminotransferase -3.7  
L-Valine PS417_00560 NAD synthetase -1.1  
L-Valine PS417_06615 ABC transporter for branched-chain amino acids, substrate-binding component (from data) +1.9 Yes
L-Valine PS417_08425 acetyltransferase +1.3  
L-Valine PS417_10535 hypothetical protein -3.9  
L-Valine PS417_01180 ribosomal protein S6 modification protein -3.0  
L-Valine PS417_01185 ribosomal protein S6 modification protein -2.3  
L-Valine PS417_12665 hypothetical protein -3.3 Yes
L-Valine PS417_12895 pyruvate dehydrogenase +3.4  
L-Valine PS417_13835 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) -4.1 Yes
L-Valine PS417_13840 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) -3.3 Yes
L-Valine PS417_01495 amino acid ABC transporter +1.1  
L-Valine PS417_01505 gamma-aminobutyrate transporter +2.9 Yes
L-Valine PS417_16500 arginyl-tRNA-protein transferase +1.4  
L-Valine PS417_01705 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) -1.7  
L-Valine PS417_19965 histidine kinase -1.9  
L-Valine PS417_20580 isocitrate dehydrogenase -2.3  
L-Valine PS417_21275 GntR family transcriptional regulator -4.8 Yes
L-Valine PS417_02150 potassium/proton antiporter +1.3  
L-Valine PS417_22235 aromatic amino acid transporter +1.1  
L-Valine PS417_23700 aromatic amino acid transporter +2.5 Yes
L-Valine PS417_23730 LysR family transcriptional regulator -4.0 Yes
L-Valine PS417_25910 amine oxidase +1.4  
L-Valine PS417_27210 AsnC family transcriptional regulator -2.3 Yes
L-Valine PS417_27810 ribonuclease PH +1.4  
L-Valine PS417_28135 sodium:alanine symporter +1.9 Yes
N-Acetyl-D-Glucosamine PS417_11430 EamA -1.9  
N-Acetyl-D-Glucosamine PS417_11530 amidase -1.3  
N-Acetyl-D-Glucosamine PS417_17435 dehydrogenase -1.4  
N-Acetyl-D-Glucosamine PS417_17450 amino acid ABC transporter substrate-binding protein -1.6  
N-Acetyl-D-Glucosamine PS417_17480 branched-chain amino acid ABC transporter substrate-binding protein -1.8  
N-Acetyl-D-Glucosamine PS417_17485 membrane protein -1.9  
N-Acetyl-D-Glucosamine PS417_17495 multidrug ABC transporter permease -1.7  
N-Acetyl-D-Glucosamine PS417_21010 ribonuclease activity regulator protein RraA -1.3  
N-Acetyl-D-Glucosamine PS417_21020 phosphoenolpyruvate synthase -2.4 Yes
N-Acetyl-D-Glucosamine PS417_22695 glyceraldehyde-3-phosphate dehydrogenase -2.5  
N-Acetyl-D-Glucosamine PS417_22980 GntR family transcriptional regulator -5.4 Yes
N-Acetyl-D-Glucosamine PS417_22985 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) -3.8 Yes
N-Acetyl-D-Glucosamine PS417_22995 PTS N-acetyl-D-glucosamine transporter -5.8 Yes
N-Acetyl-D-Glucosamine PS417_23000 PTS N-acetyl-D-glucosamine transporter -4.5 Yes
N-Acetyl-D-Glucosamine PS417_24100 transcriptional regulator PdhR -2.4  
N-Acetyl-D-Glucosamine PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF -1.7 Yes
N-Acetyl-D-Glucosamine PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC -1.3  
N-Acetyl-D-Glucosamine PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE -1.6  
N-Acetyl-D-Glucosamine PS417_28100 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) -2.3 Yes
Potassium acetate PS417_17420 ethanol oxidation regulatory protein ercA (from data) -2.9  
Potassium acetate PS417_17435 dehydrogenase -2.0  
Potassium acetate PS417_17480 branched-chain amino acid ABC transporter substrate-binding protein -1.8  
Potassium acetate PS417_17485 membrane protein -2.8  
Potassium acetate PS417_17495 multidrug ABC transporter permease -2.6  
Potassium acetate PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF -2.0  
Potassium acetate PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC -1.9  
Potassium acetate PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE -2.7  
Potassium acetate PS417_04860 ATPase -1.4  
Putrescine Dihydrochloride PS417_17420 ethanol oxidation regulatory protein ercA (from data) -1.7 Yes
Putrescine Dihydrochloride PS417_17435 dehydrogenase -2.1  
Putrescine Dihydrochloride PS417_17450 amino acid ABC transporter substrate-binding protein -1.8 Yes
Putrescine Dihydrochloride PS417_17480 branched-chain amino acid ABC transporter substrate-binding protein -2.5  
Putrescine Dihydrochloride PS417_17485 membrane protein -2.3  
Putrescine Dihydrochloride PS417_17495 multidrug ABC transporter permease -2.1 Yes
Putrescine Dihydrochloride PS417_21030 GntR family transcriptional regulator -1.5  
Putrescine Dihydrochloride PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF -1.6  
Putrescine Dihydrochloride PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC -1.7  
Putrescine Dihydrochloride PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE -2.0  
Putrescine Dihydrochloride PS417_27105 spermidine/putrescine ABC transporter permease -5.2 Yes
Putrescine Dihydrochloride PS417_27110 spermidine/putrescine ABC transporter permease -4.9 Yes
Putrescine Dihydrochloride PS417_27115 putrescine ABC transporter, ATPase component (from data) -5.1 Yes
Putrescine Dihydrochloride PS417_27125 spermidine/putrescine ABC transporter substrate-binding protein -4.1 Yes
Putrescine Dihydrochloride PS417_27130 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) -4.0 Yes
Putrescine Dihydrochloride PS417_27140 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) -6.1 Yes
Putrescine Dihydrochloride PS417_27690 XRE family transcriptional regulator +1.6  
Putrescine Dihydrochloride PS417_27710 AsnC family transcriptional regulator -1.4 Yes
Putrescine Dihydrochloride PS417_27745 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) -3.9 Yes
Sodium D,L-Lactate PS417_21020 phosphoenolpyruvate synthase -2.1 Yes
Sodium D,L-Lactate PS417_24105 D-lactate transporter (lctP family) (from data) -1.3 Yes
Sodium D-Lactate PS417_21020 phosphoenolpyruvate synthase -1.4 Yes
Sodium D-Lactate PS417_24105 D-lactate transporter (lctP family) (from data) -3.9 Yes
Sodium D-Lactate PS417_24110 4Fe-4S ferredoxin -4.1 Yes
Sodium Fumarate dibasic PS417_17420 ethanol oxidation regulatory protein ercA (from data) -2.7  
Sodium Fumarate dibasic PS417_17425 hypothetical protein -2.2  
Sodium Fumarate dibasic PS417_17435 dehydrogenase -2.1  
Sodium Fumarate dibasic PS417_17450 amino acid ABC transporter substrate-binding protein -2.0  
Sodium Fumarate dibasic PS417_17480 branched-chain amino acid ABC transporter substrate-binding protein -2.1  
Sodium Fumarate dibasic PS417_17485 membrane protein -1.8  
Sodium Fumarate dibasic PS417_17495 multidrug ABC transporter permease -2.0  
Sodium Fumarate dibasic PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF -2.2  
Sodium Fumarate dibasic PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC -2.0  
Sodium Fumarate dibasic PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE -2.8  
Sodium Fumarate dibasic PS417_04860 ATPase -1.5  
Sodium L-Lactate PS417_19125 LysR family transcriptional regulator -1.6 Yes
Sodium L-Lactate PS417_19130 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) -2.4 Yes
Sodium L-Lactate PS417_21020 phosphoenolpyruvate synthase -2.1 Yes
Sodium L-Lactate PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -1.4  
Sodium octanoate PS417_06060 phosphoenolpyruvate carboxylase -2.3 Yes
Sodium octanoate PS417_00710 fusaric acid resistance protein -5.1 Yes
Sodium octanoate PS417_00715 required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) (from data) -3.6 Yes
Sodium octanoate PS417_00720 membrane protein -4.4 Yes
Sodium octanoate PS417_07270 LysR family transcriptional regulator -2.2 Yes
Sodium octanoate PS417_00725 RND transporter -5.7 Yes
Sodium octanoate PS417_08430 phospho-2-dehydro-3-deoxyheptonate aldolase -2.5 Yes
Sodium octanoate PS417_08665 molybdopterin-guanine dinucleotide biosynthesis protein A -2.4  
Sodium octanoate PS417_10515 acetyl-CoA acetyltransferase -1.2 Yes
Sodium octanoate PS417_10815 TetR family transcriptional regulator -1.2  
Sodium octanoate PS417_11700 ligand-gated channel -2.2  
Sodium octanoate PS417_01265 CbbBc protein -2.0 Yes
Sodium octanoate PS417_13120 aspartyl beta-hydroxylase -1.9 Yes
Sodium octanoate PS417_16525 isocitrate dehydrogenase -1.2  
Sodium octanoate PS417_17390 DSBA oxidoreductase -3.6  
Sodium octanoate PS417_17395 MFS transporter -3.2  
Sodium octanoate PS417_17420 ethanol oxidation regulatory protein ercA (from data) -1.9  
Sodium octanoate PS417_19945 MarR family transcriptional regulator +1.5  
Sodium octanoate PS417_19965 histidine kinase -2.3  
Sodium octanoate PS417_19995 Long-chain fatty acid transport protein +2.1  
Sodium octanoate PS417_21010 ribonuclease activity regulator protein RraA -3.5 Yes
Sodium octanoate PS417_21395 radical SAM protein -1.6  
Sodium octanoate PS417_22065 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) -5.6 Yes
Sodium octanoate PS417_23890 ATPase +1.6  
Sodium octanoate PS417_24805 Fis family transcriptional regulator -2.9  
Sodium octanoate PS417_24810 aldehyde dehydrogenase -3.0  
Sodium octanoate PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF -1.8  
Sodium octanoate PS417_25960 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) -5.0 Yes
Sodium octanoate PS417_25975 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) -3.1 Yes
Sodium octanoate PS417_02725 hypothetical protein -2.7  
Sodium octanoate PS417_03625 lipid A 3-O-deacylase -1.8  
Sodium octanoate PS417_04485 hypothetical protein +1.0  
Sodium octanoate PS417_04735 LysR family transcriptional regulator -2.8 Yes
Sodium pyruvate PS417_08860 small component of pyruvate transporter (yjcH-like) (from data) -1.8 Yes
Sodium pyruvate PS417_08865 large component of pyruvate transporter (actP-like) (from data) -1.6 Yes
Sodium pyruvate PS417_24100 transcriptional regulator PdhR +3.4  
Sodium pyruvate PS417_24290 hypothetical protein -1.8 Yes
Sodium pyruvate PS417_24295 carbon starvation protein A -1.7 Yes
Sodium succinate dibasic hexahydrate PS417_01305 Fis family transcriptional regulator -1.1 Yes
Sodium succinate dibasic hexahydrate PS417_21500 C4 dicarboxylate transporter DctA (from data) -1.8 Yes
Trisodium citrate dihydrate PS417_05090 ferric citrate outer membrane transporter (fecA) (from data) -2.8 Yes
Trisodium citrate dihydrate PS417_05540 histidine kinase +5.0  
Trisodium citrate dihydrate PS417_07065 tripartite tricarboxylate transporter TctA +9.2 Yes
Trisodium citrate dihydrate PS417_07070 membrane protein +9.0 Yes
Trisodium citrate dihydrate PS417_07075 tricarboxylic transport membrane protein +8.2 Yes
Trisodium citrate dihydrate PS417_07080 porin +6.0 Yes
Trisodium citrate dihydrate PS417_07085 transcriptional regulator +7.8 Yes
Trisodium citrate dihydrate PS417_07090 histidine kinase +7.6 Yes
Trisodium citrate dihydrate PS417_07635 transcription-repair coupling factor +1.6  
Trisodium citrate dihydrate PS417_12195 ABC transporter permease +2.1  
Trisodium citrate dihydrate PS417_12200 microcin ABC transporter permease +2.4  
Trisodium citrate dihydrate PS417_12205 hypothetical protein +2.4  
Trisodium citrate dihydrate PS417_13375 LysR family transcriptional regulator -1.4  
Trisodium citrate dihydrate PS417_22270 hypothetical protein +1.9  
Trisodium citrate dihydrate PS417_22670 AraC family transcriptional regulator -1.4  
Trisodium citrate dihydrate PS417_23890 ATPase +1.4  
Trisodium citrate dihydrate PS417_02480 DNA mismatch repair protein +2.6  
Uridine PS417_03245 omega amino acid--pyruvate aminotransferase -1.0 Yes
Xylitol PS417_09715 hypothetical protein -1.2  
Xylitol PS417_12040 dihydroxyacetone kinase -1.9  
Xylitol PS417_12050 short-chain dehydrogenase -1.7  
Xylitol PS417_12055 xylitol ABC transporter, substrate-binding component (from data) -1.6  
Xylitol PS417_12060 xylitol ABC transporter, permease component (from data) -1.8  
Xylitol PS417_12065 xylitol ABC transporter, ATPase component (from data) -1.8  
Xylitol PS417_12075 DNA-binding protein +2.3  
Xylitol PS417_12690 xylulose kinase -5.2  
Xylitol PS417_12710 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) -1.3  
Xylitol PS417_12715 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) -1.2  
Xylitol PS417_12725 AraC family transcriptional regulator -1.3 Yes
Xylitol PS417_17720 xylitol 2-dehydrogenase (EC 1.1.1.9) (from data) -3.4 Yes
Xylitol PS417_17735 LacI family transcriptional regulator -3.8  
Xylitol PS417_22695 glyceraldehyde-3-phosphate dehydrogenase -1.8  
a-Ketoglutaric acid disodium salt hydrate PS417_22640 cytochrome C biogenesis protein CcmE -2.1 Yes
a-Ketoglutaric acid disodium salt hydrate PS417_22645 C4-dicarboxylate ABC transporter -1.7 Yes
a-Ketoglutaric acid disodium salt hydrate PS417_22650 MFS transporter -1.4 Yes
m-Inositol PS417_10925 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) -1.3 Yes
m-Inositol PS417_11850 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) -3.6 Yes
m-Inositol PS417_11855 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) -3.0 Yes
m-Inositol PS417_11860 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) -3.2 Yes
m-Inositol PS417_11870 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) -3.0 Yes
m-Inositol PS417_11875 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) -3.4 Yes
m-Inositol PS417_11885 Inositol transport system sugar-binding protein (from data) -3.4 Yes
m-Inositol PS417_11890 Inositol transport system ATP-binding protein (from data) -3.2 Yes
m-Inositol PS417_11895 Inositol transport system permease protein (from data) -3.1 Yes
m-Inositol PS417_03245 omega amino acid--pyruvate aminotransferase -1.0  
m-Inositol PS417_03250 methylmalonate-semialdehyde dehydrogenase -1.4 Yes