| Condition | Gene | Description | Fitness | Cons. |
|---|
| 2-Deoxy-D-Ribose | ABID97_RS01570 | LysR substrate-binding domain-containing protein | -4.9 | |
| 2-Deoxy-D-Ribose | ABID97_RS03180 | acetoacetate--CoA ligase | -1.1 | |
| 2-Deoxy-D-Ribose | ABID97_RS03385 | AAA family ATPase | -1.4 | |
| 2-Deoxy-D-Ribose | ABID97_RS04020 | GMC family oxidoreductase N-terminal domain-containing protein | -1.2 | |
| 2-Deoxy-D-Ribose | ABID97_RS06325 | histidine kinase | -1.5 | |
| 2-Deoxy-D-Ribose | ABID97_RS06545 | ROK family protein | +1.5 | |
| 2-Deoxy-D-Ribose | ABID97_RS09420 | carbon monoxide dehydrogenase subunit G | -1.3 | |
| 2-Deoxy-D-Ribose | ABID97_RS10360 | tripartite tricarboxylate transporter substrate binding protein | variable | |
| 2-Deoxy-D-Ribose | ABID97_RS15705 | 3-(methylthio)propionyl-CoA ligase | +1.4 | |
| 2-Deoxy-D-Ribose | ABID97_RS17020 | phosphotransferase | -1.5 | Yes |
| 2-Deoxy-D-Ribose | ABID97_RS25535 | sugar ABC transporter substrate-binding protein | variable | |
| 2-Deoxy-D-Ribose | ABID97_RS25985 | CaiB/BaiF CoA-transferase family protein | +5.4 | |
| 2-Deoxy-D-Ribose | ABID97_RS28745 | GMC family oxidoreductase N-terminal domain-containing protein | +2.6 | |
| 2-Deoxy-D-Ribose | ABID97_RS28795 | SMP-30/gluconolactonase/LRE family protein | -2.0 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS00735 | LysR family transcriptional regulator | +3.8 | |
| 4-Hydroxybenzoic Acid | ABID97_RS00880 | AMP nucleosidase | +2.0 | |
| 4-Hydroxybenzoic Acid | ABID97_RS01420 | cyclopropane-fatty-acyl-phospholipid synthase family protein | -3.0 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS02075 | DUF3717 domain-containing protein | -1.6 | |
| 4-Hydroxybenzoic Acid | ABID97_RS03790 | branched-chain amino acid transaminase | -2.4 | |
| 4-Hydroxybenzoic Acid | ABID97_RS04360 | helicase SNF2 | +3.7 | |
| 4-Hydroxybenzoic Acid | ABID97_RS05360 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | +1.2 | |
| 4-Hydroxybenzoic Acid | ABID97_RS05865 | 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein | -1.6 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS06495 | histidine phosphatase family protein | +1.6 | |
| 4-Hydroxybenzoic Acid | ABID97_RS08550 | aconitate hydratase AcnA | -3.0 | |
| 4-Hydroxybenzoic Acid | ABID97_RS08770 | histidinol-phosphate transaminase | -5.0 | |
| 4-Hydroxybenzoic Acid | ABID97_RS13985 | polyhydroxyalkanoate depolymerase | -2.3 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS14080 | M3 family metallopeptidase | -1.2 | |
| 4-Hydroxybenzoic Acid | ABID97_RS14945 | 4-hydroxybenzoate 3-monooxygenase | -7.1 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS16305 | response regulator | +1.6 | |
| 4-Hydroxybenzoic Acid | ABID97_RS17725 | tripartite tricarboxylate transporter permease | +1.0 | |
| 4-Hydroxybenzoic Acid | ABID97_RS19350 | group 1 truncated hemoglobin | -1.3 | |
| 4-Hydroxybenzoic Acid | ABID97_RS19705 | carboxymuconolactone decarboxylase family protein | -7.7 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS19895 | histone deacetylase family protein | -3.7 | |
| 4-Hydroxybenzoic Acid | ABID97_RS19925 | ABC transporter substrate-binding protein | -2.6 | |
| 4-Hydroxybenzoic Acid | ABID97_RS19935 | carbohydrate ABC transporter permease | -2.2 | |
| 4-Hydroxybenzoic Acid | ABID97_RS19950 | ABC transporter ATP-binding protein | -2.3 | |
| 4-Hydroxybenzoic Acid | ABID97_RS20390 | DHA2 family efflux MFS transporter permease subunit | variable | |
| 4-Hydroxybenzoic Acid | ABID97_RS20740 | FUSC family membrane protein | -4.3 | |
| 4-Hydroxybenzoic Acid | ABID97_RS21060 | DUF427 domain-containing protein | -2.1 | |
| 4-Hydroxybenzoic Acid | ABID97_RS23730 | tetratricopeptide repeat protein | +1.7 | |
| 4-Hydroxybenzoic Acid | ABID97_RS24195 | 3-oxoacid CoA-transferase subunit B | -5.8 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS24200 | 3-oxoacid CoA-transferase subunit A | -5.1 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS24375 | LysR substrate-binding domain-containing protein | -5.4 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS24380 | protocatechuate 3,4-dioxygenase subunit beta | -6.5 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS24385 | protocatechuate 3,4-dioxygenase subunit alpha | -7.7 | Yes |
| 4-Hydroxybenzoic Acid | ABID97_RS24945 | cation diffusion facilitator family transporter | -3.5 | |
| 4-Hydroxybenzoic Acid | ABID97_RS25150 | thioredoxin family protein | +1.9 | |
| Adenine hydrochloride hydrate | ABID97_RS00340 | DUF2946 family protein | -1.3 | |
| Adenine hydrochloride hydrate | ABID97_RS02825 | heavy metal translocating P-type ATPase | -1.7 | |
| Adenine hydrochloride hydrate | ABID97_RS07525 | molybdate ABC transporter permease subunit | -2.0 | |
| Adenine hydrochloride hydrate | ABID97_RS07530 | molybdate ABC transporter substrate-binding protein | -2.0 | |
| Adenine hydrochloride hydrate | ABID97_RS07535 | ATP-binding cassette domain-containing protein | -1.9 | |
| Adenine hydrochloride hydrate | ABID97_RS14745 | gephyrin-like molybdotransferase Glp | -1.5 | |
| Adenine hydrochloride hydrate | ABID97_RS20205 | nicotinamide riboside transporter PnuC | -2.0 | |
| Adenine hydrochloride hydrate | ABID97_RS22045 | guanine deaminase | +1.1 | |
| Adenine hydrochloride hydrate | ABID97_RS22050 | BMP family ABC transporter substrate-binding protein | -1.1 | |
| Adenine hydrochloride hydrate | ABID97_RS22110 | NCS2 family permease | -1.6 | |
| Adenine hydrochloride hydrate | ABID97_RS22115 | LysR family transcriptional regulator | -3.1 | |
| Adenine hydrochloride hydrate | ABID97_RS22120 | xanthine dehydrogenase molybdopterin binding subunit | -3.6 | |
| Adenine hydrochloride hydrate | ABID97_RS22125 | xanthine dehydrogenase small subunit | -3.0 | |
| Adenine hydrochloride hydrate | ABID97_RS22185 | urate hydroxylase PuuD | -2.6 | |
| Adenine hydrochloride hydrate | ABID97_RS22200 | hydroxyisourate hydrolase | -4.8 | |
| Adenine hydrochloride hydrate | ABID97_RS22210 | allantoinase PuuE | -5.0 | |
| Adenine hydrochloride hydrate | ABID97_RS22215 | 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | -4.9 | |
| Adenine hydrochloride hydrate | ABID97_RS22220 | ArgE/DapE family deacylase | -4.1 | |
| Adenine hydrochloride hydrate | ABID97_RS22320 | glyoxylate carboligase | -4.1 | |
| D,L-Malic Acid | ABID97_RS00315 | TetR family transcriptional regulator | -1.8 | |
| D,L-Malic Acid | ABID97_RS00705 | (2Fe-2S) ferredoxin domain-containing protein | +1.1 | |
| D,L-Malic Acid | ABID97_RS01420 | cyclopropane-fatty-acyl-phospholipid synthase family protein | -1.7 | |
| D,L-Malic Acid | ABID97_RS01935 | 3-oxo-tetronate kinase | -1.1 | |
| D,L-Malic Acid | ABID97_RS02055 | PepSY-associated TM helix domain-containing protein | +1.2 | |
| D,L-Malic Acid | ABID97_RS06515 | SDR family oxidoreductase | -4.6 | |
| D,L-Malic Acid | ABID97_RS08265 | S49 family peptidase | -1.2 | |
| D,L-Malic Acid | ABID97_RS08550 | aconitate hydratase AcnA | +1.6 | |
| D,L-Malic Acid | ABID97_RS09905 | YncE family protein | -4.5 | |
| D,L-Malic Acid | ABID97_RS09910 | polysaccharide deacetylase family protein | -2.8 | |
| D,L-Malic Acid | ABID97_RS09915 | sterol desaturase family protein | -4.5 | |
| D,L-Malic Acid | ABID97_RS10635 | excinuclease ABC subunit UvrC | -1.7 | |
| D,L-Malic Acid | ABID97_RS10660 | tartrate dehydrogenase | -1.1 | |
| D,L-Malic Acid | ABID97_RS13925 | GntR family transcriptional regulator | +1.9 | |
| D,L-Malic Acid | ABID97_RS14955 | response regulator | -7.1 | |
| D,L-Malic Acid | ABID97_RS14965 | DegQ family serine endoprotease | -4.5 | |
| D,L-Malic Acid | ABID97_RS15620 | cell division protein ZipA C-terminal FtsZ-binding domain-containing protein | -1.6 | |
| D,L-Malic Acid | ABID97_RS17545 | class II fumarate hydratase | +1.2 | |
| D,L-Malic Acid | ABID97_RS19540 | phosphoethanolamine--lipid A transferase | -1.8 | |
| D,L-Malic Acid | ABID97_RS21925 | heme-binding beta-barrel domain-containing protein | -2.4 | |
| D,L-Malic Acid | ABID97_RS24945 | cation diffusion facilitator family transporter | -1.6 | |
| D-Arabinose | ABID97_RS02940 | FAD-linked oxidase C-terminal domain-containing protein | -1.2 | |
| D-Arabinose | ABID97_RS05790 | DMT family transporter | +1.0 | |
| D-Arabinose | ABID97_RS05800 | altronate dehydratase family protein | -5.0 | Yes |
| D-Arabinose | ABID97_RS05805 | TRAP transporter large permease | +6.6 | |
| D-Arabinose | ABID97_RS05815 | sialic acid TRAP transporter substrate-binding protein SiaP | +5.1 | |
| D-Arabinose | ABID97_RS05825 | SDR family oxidoreductase | +7.0 | |
| D-Arabinose | ABID97_RS05830 | SDR family NAD(P)-dependent oxidoreductase | +2.4 | |
| D-Arabinose | ABID97_RS07135 | L-iditol 2-dehydrogenase | -7.0 | Yes |
| D-Arabinose | ABID97_RS07140 | transaldolase family protein | +3.5 | |
| D-Arabinose | ABID97_RS09980 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | +1.6 | |
| D-Arabinose | ABID97_RS22965 | ClpXP protease specificity-enhancing factor | -1.4 | |
| D-Arabinose | ABID97_RS23480 | ATP-binding protein | -1.0 | Yes |
| D-Fructose | ABID97_RS07075 | iron ABC transporter permease | +1.4 | |
| D-Fructose | ABID97_RS07090 | lipocalin family protein | +1.9 | |
| D-Fructose | ABID97_RS07150 | AraC family transcriptional regulator | -1.6 | |
| D-Fructose | ABID97_RS16995 | D-2-hydroxyacid dehydrogenase family protein | +1.3 | |
| D-Galactose | ABID97_RS06780 | aldose epimerase family protein | -1.4 | Yes |
| D-Galactose | ABID97_RS06815 | SMP-30/gluconolactonase/LRE family protein | -2.7 | Yes |
| D-Galactose | ABID97_RS06820 | SDR family oxidoreductase | -2.8 | Yes |
| D-Galactose | ABID97_RS06840 | multiple monosaccharide ABC transporter substrate-binding protein | -3.6 | Yes |
| D-Galactose | ABID97_RS06850 | multiple monosaccharide ABC transporter permease | -4.1 | Yes |
| D-Galactose | ABID97_RS21210 | 2-dehydro-3-deoxygalactonokinase | -8.1 | Yes |
| D-Galactose | ABID97_RS21215 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | -7.4 | Yes |
| D-Gluconic Acid sodium salt | ABID97_RS00260 | PilT/PilU family type 4a pilus ATPase | -1.1 | |
| D-Gluconic Acid sodium salt | ABID97_RS20030 | sugar kinase | -1.5 | |
| D-Glucose | ABID97_RS01170 | ABC transporter permease | -3.0 | Yes |
| D-Glucose | ABID97_RS02540 | phosphotransferase | -2.7 | |
| D-Glucose | ABID97_RS09125 | histidine kinase | +1.4 | |
| D-Glucose | ABID97_RS16615 | ATP-dependent RNA helicase HrpA | +1.4 | |
| D-Glucose | ABID97_RS23110 | D-hexose-6-phosphate mutarotase | -1.2 | |
| D-Glucuronic Acid | ABID97_RS01925 | 2-oxo-tetronate isomerase | -1.4 | |
| D-Glucuronic Acid | ABID97_RS01935 | 3-oxo-tetronate kinase | -1.6 | |
| D-Glucuronic Acid | ABID97_RS05835 | fumarylacetoacetate hydrolase family protein | +2.5 | |
| D-Glucuronic Acid | ABID97_RS07310 | BLUF domain-containing protein | -1.3 | |
| D-Glucuronic Acid | ABID97_RS09125 | histidine kinase | +2.6 | |
| D-Glucuronic Acid | ABID97_RS10060 | FAD-binding oxidoreductase | -2.9 | |
| D-Glucuronic Acid | ABID97_RS10330 | TRAP transporter large permease | -3.9 | Yes |
| D-Glucuronic Acid | ABID97_RS10350 | NAD(P)-dependent oxidoreductase | -5.3 | Yes |
| D-Glucuronic Acid | ABID97_RS10360 | tripartite tricarboxylate transporter substrate binding protein | +6.6 | |
| D-Glucuronic Acid | ABID97_RS10365 | 5-dehydro-4-deoxyglucarate dehydratase | -2.7 | Yes |
| D-Glucuronic Acid | ABID97_RS10595 | sodium:proton antiporter | -1.0 | |
| D-Glucuronic Acid | ABID97_RS10600 | D-glycerate dehydrogenase | +3.5 | |
| D-Glucuronic Acid | ABID97_RS14050 | NAD(P)/FAD-dependent oxidoreductase | -3.2 | Yes |
| D-Glucuronic Acid | ABID97_RS16615 | ATP-dependent RNA helicase HrpA | +2.3 | |
| D-Glucuronic Acid | ABID97_RS19690 | TIM barrel protein | +7.2 | |
| D-Glucuronic Acid | ABID97_RS21920 | autotransporter outer membrane beta-barrel domain-containing protein | +1.7 | |
| D-Glucuronic Acid | ABID97_RS23200 | VacJ family lipoprotein | +1.3 | |
| D-Glucuronic Acid | ABID97_RS25650 | ribonuclease activity regulator RraA | +1.8 | |
| D-Glucuronic Acid | ABID97_RS25870 | IlvD/Edd family dehydratase | -2.1 | |
| D-Mannose | ABID97_RS00340 | DUF2946 family protein | -1.6 | |
| D-Mannose | ABID97_RS05795 | malate/lactate/ureidoglycolate dehydrogenase | -2.3 | |
| D-Mannose | ABID97_RS05800 | altronate dehydratase family protein | -1.8 | |
| D-Mannose | ABID97_RS06545 | ROK family protein | -2.1 | |
| D-Mannose | ABID97_RS14050 | NAD(P)/FAD-dependent oxidoreductase | -2.2 | |
| D-Ribose | ABID97_RS01925 | 2-oxo-tetronate isomerase | +2.0 | |
| D-Ribose | ABID97_RS01935 | 3-oxo-tetronate kinase | +2.0 | |
| D-Ribose | ABID97_RS04660 | 6-phosphofructokinase | -2.0 | |
| D-Ribose | ABID97_RS24760 | sugar ABC transporter ATP-binding protein | -2.2 | Yes |
| D-Ribose | ABID97_RS24765 | ABC transporter permease | -2.4 | Yes |
| D-Serine | ABID97_RS13930 | methylmalonyl-CoA mutase | +3.9 | |
| D-Serine | ABID97_RS25175 | MBL fold metallo-hydrolase | +1.9 | |
| D-Sorbitol | ABID97_RS07110 | sugar ABC transporter substrate-binding protein | -5.4 | Yes |
| D-Sorbitol | ABID97_RS07115 | sugar ABC transporter permease | -6.5 | Yes |
| D-Sorbitol | ABID97_RS07120 | carbohydrate ABC transporter permease | -6.0 | Yes |
| D-Sorbitol | ABID97_RS07125 | sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC | -5.4 | Yes |
| D-Sorbitol | ABID97_RS07135 | L-iditol 2-dehydrogenase | -7.3 | Yes |
| D-Sorbitol | ABID97_RS07150 | AraC family transcriptional regulator | -6.2 | Yes |
| D-Xylose | ABID97_RS00070 | fumarylacetoacetate hydrolase family protein | -1.4 | |
| D-Xylose | ABID97_RS01170 | ABC transporter permease | -2.2 | Yes |
| D-Xylose | ABID97_RS02940 | FAD-linked oxidase C-terminal domain-containing protein | -1.7 | |
| D-Xylose | ABID97_RS03290 | LysR family transcriptional regulator | -1.8 | |
| D-Xylose | ABID97_RS05835 | fumarylacetoacetate hydrolase family protein | -2.6 | |
| D-Xylose | ABID97_RS06815 | SMP-30/gluconolactonase/LRE family protein | -3.3 | Yes |
| D-Xylose | ABID97_RS06870 | IlvD/Edd family dehydratase | +1.2 | Yes |
| D-Xylose | ABID97_RS22175 | NAD-dependent succinate-semialdehyde dehydrogenase | -2.4 | |
| D-Xylose | ABID97_RS23480 | ATP-binding protein | -1.0 | |
| Ethanol | ABID97_RS15020 | aldehyde dehydrogenase | -1.1 | Yes |
| Ethanol | ABID97_RS17525 | acetate--CoA ligase | -1.7 | |
| Glucuronamide | ABID97_RS01170 | ABC transporter permease | +3.3 | |
| Glucuronamide | ABID97_RS04095 | TSUP family transporter | +1.0 | |
| Glucuronamide | ABID97_RS10360 | tripartite tricarboxylate transporter substrate binding protein | +1.9 | |
| Glucuronamide | ABID97_RS23110 | D-hexose-6-phosphate mutarotase | +1.6 | |
| Gly-Glu | ABID97_RS05655 | D-amino acid dehydrogenase | -1.6 | |
| Gly-Glu | ABID97_RS05935 | amino acid ABC transporter substrate-binding protein | -5.1 | |
| Gly-Glu | ABID97_RS05940 | amino acid ABC transporter permease | -6.8 | |
| Gly-Glu | ABID97_RS05945 | amino acid ABC transporter permease | -5.9 | |
| Gly-Glu | ABID97_RS19580 | hydantoinase B/oxoprolinase family protein | -1.0 | |
| Glycerol | ABID97_RS01765 | LysR family transcriptional regulator | +1.4 | |
| Glycerol | ABID97_RS01770 | VOC family protein | +1.6 | |
| Glycerol | ABID97_RS07090 | lipocalin family protein | +1.0 | |
| Glycolic Acid | ABID97_RS01420 | cyclopropane-fatty-acyl-phospholipid synthase family protein | -1.8 | |
| Glycolic Acid | ABID97_RS01925 | 2-oxo-tetronate isomerase | -1.5 | |
| Glycolic Acid | ABID97_RS02235 | TerC family protein | +1.3 | |
| Glycolic Acid | ABID97_RS03515 | amino acid synthesis family protein | -2.2 | |
| Glycolic Acid | ABID97_RS03645 | LysR substrate-binding domain-containing protein | -5.4 | |
| Glycolic Acid | ABID97_RS03650 | FAD-linked oxidase C-terminal domain-containing protein | -6.1 | Yes |
| Glycolic Acid | ABID97_RS03660 | glycolate oxidase subunit GlcF | -6.0 | Yes |
| Glycolic Acid | ABID97_RS04715 | haloacid dehalogenase type II | -2.1 | |
| Glycolic Acid | ABID97_RS05240 | phosphoglycolate phosphatase | -2.4 | Yes |
| Glycolic Acid | ABID97_RS05490 | PAS domain S-box protein | -1.2 | |
| Glycolic Acid | ABID97_RS08055 | MFS transporter | -4.9 | |
| Glycolic Acid | ABID97_RS08550 | aconitate hydratase AcnA | -1.8 | |
| Glycolic Acid | ABID97_RS17390 | adenosylcobinamide-phosphate synthase CbiB | +2.4 | |
| Glycolic Acid | ABID97_RS22320 | glyoxylate carboligase | -5.3 | Yes |
| Glycolic Acid | ABID97_RS27670 | glycerate kinase | -5.6 | Yes |
| Glycolic Acid | ABID97_RS27675 | pyruvate kinase | -2.5 | |
| L-Alanine | ABID97_RS01420 | cyclopropane-fatty-acyl-phospholipid synthase family protein | +1.9 | |
| L-Alanine | ABID97_RS12540 | Lrp/AsnC family transcriptional regulator | +1.2 | |
| L-Arabinose | ABID97_RS03725 | 2-oxo-hept-4-ene-1,7-dioate hydratase | +2.1 | |
| L-Arabinose | ABID97_RS03730 | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | +1.7 | |
| L-Arabinose | ABID97_RS03735 | extradiol ring-cleavage dioxygenase | +1.5 | |
| L-Arabinose | ABID97_RS03740 | aromatic ring-opening dioxygenase subunit LigA | +1.7 | |
| L-Arabinose | ABID97_RS03745 | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | +1.4 | |
| L-Arabinose | ABID97_RS03750 | tripartite tricarboxylate transporter substrate binding protein | +1.2 | |
| L-Arabinose | ABID97_RS03755 | fumarylacetoacetate hydrolase family protein | +1.5 | |
| L-Arabinose | ABID97_RS03760 | fumarylacetoacetate hydrolase family protein | +1.7 | |
| L-Arabinose | ABID97_RS03765 | homoprotocatechuate degradation operon regulator HpaR | +1.9 | |
| L-Arabinose | ABID97_RS03775 | hypothetical protein | +1.5 | |
| L-Arabinose | ABID97_RS06855 | sugar ABC transporter ATP-binding protein | -7.8 | Yes |
| L-Arabinose | ABID97_RS06860 | ABC transporter permease | -3.5 | Yes |
| L-Arabinose | ABID97_RS06870 | IlvD/Edd family dehydratase | -6.0 | Yes |
| L-Arabinose | ABID97_RS15955 | iron-containing alcohol dehydrogenase | -1.1 | |
| L-Arabinose | ABID97_RS22175 | NAD-dependent succinate-semialdehyde dehydrogenase | -5.1 | |
| L-Arabinose | ABID97_RS22965 | ClpXP protease specificity-enhancing factor | -1.6 | |
| L-Arabinose | ABID97_RS23480 | ATP-binding protein | -3.1 | |
| L-Asparagine | ABID97_RS07275 | sodium:solute symporter family protein | +1.8 | |
| L-Asparagine | ABID97_RS16980 | asparaginase | -2.0 | Yes |
| L-Asparagine | ABID97_RS17530 | YqhA family protein | +3.1 | Yes |
| L-Asparagine | ABID97_RS20725 | serine O-acetyltransferase | -1.4 | |
| L-Asparagine | ABID97_RS23115 | dicarboxylate/amino acid:cation symporter | +1.4 | |
| L-Fucose | ABID97_RS05800 | altronate dehydratase family protein | -1.2 | Yes |
| L-Fucose | ABID97_RS20125 | 4-hydroxy-tetrahydrodipicolinate synthase | +1.5 | |
| L-Glutamine | ABID97_RS17530 | YqhA family protein | +1.7 | |
| L-Histidine | ABID97_RS01570 | LysR substrate-binding domain-containing protein | -2.7 | |
| L-Histidine | ABID97_RS03395 | DNA helicase RecQ | +1.1 | |
| L-Histidine | ABID97_RS03400 | ABC transporter substrate-binding protein | -5.3 | |
| L-Histidine | ABID97_RS03405 | ABC transporter permease | -4.8 | |
| L-Histidine | ABID97_RS03425 | urocanate hydratase | -6.4 | Yes |
| L-Histidine | ABID97_RS03435 | imidazolonepropionase | -5.6 | Yes |
| L-Histidine | ABID97_RS03440 | formimidoylglutamate deiminase | -7.5 | Yes |
| L-Histidine | ABID97_RS03445 | N-formylglutamate deformylase | -6.2 | Yes |
| L-Histidine | ABID97_RS04105 | tripartite tricarboxylate transporter permease | +1.2 | |
| L-Histidine | ABID97_RS04110 | tripartite tricarboxylate transporter TctB family protein | +1.4 | |
| L-Histidine | ABID97_RS04895 | site-specific recombinase | -1.0 | |
| L-Histidine | ABID97_RS05610 | LysE family translocator | +2.1 | |
| L-Histidine | ABID97_RS05615 | DJ-1/PfpI family protein | +1.5 | |
| L-Histidine | ABID97_RS05620 | PLP-dependent aminotransferase family protein | +1.4 | |
| L-Histidine | ABID97_RS05625 | DMT family transporter | +1.4 | |
| L-Histidine | ABID97_RS05775 | catalase | -3.5 | |
| L-Histidine | ABID97_RS05850 | TetR/AcrR family transcriptional regulator | -1.6 | |
| L-Histidine | ABID97_RS06335 | metalloprotease TldD | -1.9 | |
| L-Histidine | ABID97_RS06355 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | -1.5 | |
| L-Histidine | ABID97_RS06605 | LysR substrate-binding domain-containing protein | -2.5 | |
| L-Histidine | ABID97_RS07030 | ABC transporter permease | -1.5 | |
| L-Histidine | ABID97_RS07035 | M20 aminoacylase family protein | -1.4 | |
| L-Histidine | ABID97_RS07525 | molybdate ABC transporter permease subunit | +1.4 | |
| L-Histidine | ABID97_RS07530 | molybdate ABC transporter substrate-binding protein | +1.4 | |
| L-Histidine | ABID97_RS07535 | ATP-binding cassette domain-containing protein | +1.2 | |
| L-Histidine | ABID97_RS08375 | DNA repair protein RecO | -1.9 | Yes |
| L-Histidine | ABID97_RS08550 | aconitate hydratase AcnA | +3.7 | |
| L-Histidine | ABID97_RS09545 | HAD-IA family hydrolase | -1.3 | |
| L-Histidine | ABID97_RS09955 | exodeoxyribonuclease III | -2.3 | |
| L-Histidine | ABID97_RS10775 | TonB-dependent receptor | +1.4 | |
| L-Histidine | ABID97_RS10780 | Fe2+-dependent dioxygenase | +1.5 | |
| L-Histidine | ABID97_RS13705 | hypothetical protein | -1.4 | |
| L-Histidine | ABID97_RS14080 | M3 family metallopeptidase | -3.0 | |
| L-Histidine | ABID97_RS15905 | MATE family efflux transporter | +1.0 | |
| L-Histidine | ABID97_RS16900 | exodeoxyribonuclease I | -1.6 | |
| L-Histidine | ABID97_RS17545 | class II fumarate hydratase | +2.2 | |
| L-Histidine | ABID97_RS19925 | ABC transporter substrate-binding protein | -1.4 | |
| L-Histidine | ABID97_RS20695 | metalloprotease PmbA | -2.0 | |
| L-Histidine | ABID97_RS21440 | cyclic peptide export ABC transporter | +1.9 | |
| L-Histidine | ABID97_RS21465 | TonB-dependent siderophore receptor | +1.7 | |
| L-Histidine | ABID97_RS23365 | PepSY domain-containing protein | +1.8 | |
| L-Histidine | ABID97_RS23370 | TonB-dependent siderophore receptor | +1.2 | |
| L-Histidine | ABID97_RS24605 | benzoylformate decarboxylase | -1.2 | |
| L-Histidine | ABID97_RS24800 | peptidase M61 | -1.6 | |
| L-Histidine | ABID97_RS24945 | cation diffusion facilitator family transporter | +1.2 | |
| L-Leucine | ABID97_RS01860 | indolepyruvate ferredoxin oxidoreductase family protein | -6.0 | Yes |
| L-Leucine | ABID97_RS01865 | Lrp/AsnC family transcriptional regulator | -1.6 | |
| L-Leucine | ABID97_RS03790 | branched-chain amino acid transaminase | -2.4 | Yes |
| L-Leucine | ABID97_RS19655 | aminomethyl-transferring glycine dehydrogenase | -1.6 | Yes |
| L-Leucine | ABID97_RS25140 | isovaleryl-CoA dehydrogenase | -6.7 | Yes |
| L-Leucine | ABID97_RS25145 | AraC family transcriptional regulator | -5.4 | |
| L-Malic acid disodium salt monohydrate | ABID97_RS02790 | penicillin-binding protein 1A | -1.8 | |
| L-Malic acid disodium salt monohydrate | ABID97_RS06755 | putative Na+/H+ antiporter | -2.7 | |
| L-Malic acid disodium salt monohydrate | ABID97_RS06900 | cyanophycin synthetase | -1.3 | |
| L-Malic acid disodium salt monohydrate | ABID97_RS08695 | permease | -1.7 | |
| L-Malic acid disodium salt monohydrate | ABID97_RS25280 | phosphatase PAP2 family protein | -1.1 | |
| L-Phenylalanine | ABID97_RS00080 | DUF3567 domain-containing protein | -1.4 | |
| L-Phenylalanine | ABID97_RS00260 | PilT/PilU family type 4a pilus ATPase | -1.4 | |
| L-Phenylalanine | ABID97_RS01890 | FAD-binding oxidoreductase | -2.0 | |
| L-Phenylalanine | ABID97_RS01900 | NAD(P)H-dependent oxidoreductase | +1.5 | |
| L-Phenylalanine | ABID97_RS01905 | PDR/VanB family oxidoreductase | -6.0 | |
| L-Phenylalanine | ABID97_RS01910 | TetR family transcriptional regulator C-terminal domain-containing protein | -6.1 | |
| L-Phenylalanine | ABID97_RS03675 | DMT family transporter | -1.6 | |
| L-Phenylalanine | ABID97_RS03955 | fumarylacetoacetase | -7.0 | |
| L-Phenylalanine | ABID97_RS03960 | homogentisate 1,2-dioxygenase | -2.5 | |
| L-Phenylalanine | ABID97_RS03970 | FAD-dependent oxidoreductase | -1.7 | |
| L-Phenylalanine | ABID97_RS06360 | hypothetical protein | +1.7 | |
| L-Phenylalanine | ABID97_RS06515 | SDR family oxidoreductase | -7.3 | |
| L-Phenylalanine | ABID97_RS07295 | dihydroneopterin triphosphate diphosphatase | +1.5 | |
| L-Phenylalanine | ABID97_RS07300 | endonuclease/exonuclease/phosphatase family protein | +2.2 | |
| L-Phenylalanine | ABID97_RS08780 | 4a-hydroxytetrahydrobiopterin dehydratase | -7.1 | |
| L-Phenylalanine | ABID97_RS09045 | SDR family oxidoreductase | -7.5 | |
| L-Phenylalanine | ABID97_RS10870 | PhoH family protein | -1.1 | |
| L-Phenylalanine | ABID97_RS19115 | polysaccharide biosynthesis/export family protein | +1.5 | |
| L-Phenylalanine | ABID97_RS19160 | glycosyltransferase WbuB | +1.4 | |
| L-Phenylalanine | ABID97_RS23630 | radical SAM family heme chaperone HemW | +1.1 | |
| L-Phenylalanine | ABID97_RS23635 | non-canonical purine NTP pyrophosphatase | -1.8 | |
| L-Phenylalanine | ABID97_RS25005 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | +1.1 | |
| L-Phenylalanine | ABID97_RS25305 | NAD(P)H-dependent oxidoreductase | -1.3 | |
| L-Phenylalanine | ABID97_RS25355 | Lrp/AsnC family transcriptional regulator | -7.2 | Yes |
| L-Phenylalanine | ABID97_RS25360 | 4-hydroxyphenylpyruvate dioxygenase | -6.5 | Yes |
| L-Phenylalanine | ABID97_RS25365 | transporter substrate-binding domain-containing protein | -2.8 | |
| L-Phenylalanine | ABID97_RS25370 | phenylalanine 4-monooxygenase | -7.0 | Yes |
| L-Phenylalanine | ABID97_RS25400 | tRNA-Ile | +1.6 | |
| L-Proline | ABID97_RS00240 | L-glutamate gamma-semialdehyde dehydrogenase | -5.3 | Yes |
| L-Proline | ABID97_RS00245 | Lrp/AsnC ligand binding domain-containing protein | -4.1 | Yes |
| L-Threonine | ABID97_RS01960 | alpha-ketoglutarate dehydrogenase | -4.6 | |
| L-Threonine | ABID97_RS01965 | Lrp/AsnC family transcriptional regulator | -4.8 | |
| L-Threonine | ABID97_RS02910 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | +1.7 | |
| L-Threonine | ABID97_RS03450 | homocysteine S-methyltransferase family protein | -3.3 | |
| L-Threonine | ABID97_RS03470 | methionine synthase | -3.2 | |
| L-Threonine | ABID97_RS04340 | excinuclease ABC subunit UvrA | -1.6 | |
| L-Threonine | ABID97_RS06360 | hypothetical protein | +1.2 | |
| L-Threonine | ABID97_RS07835 | replication-associated recombination protein A | -1.4 | |
| L-Threonine | ABID97_RS09150 | UvrD-helicase domain-containing protein | -1.9 | |
| L-Threonine | ABID97_RS10260 | SpoVR family protein | +1.6 | |
| L-Threonine | ABID97_RS10265 | YeaH/YhbH family protein | +1.6 | |
| L-Threonine | ABID97_RS10270 | PrkA family serine protein kinase | +1.5 | |
| L-Threonine | ABID97_RS10310 | lactonase family protein | +1.0 | |
| L-Threonine | ABID97_RS10635 | excinuclease ABC subunit UvrC | -4.1 | |
| L-Threonine | ABID97_RS10715 | 5'/3'-nucleotidase SurE | -1.6 | |
| L-Threonine | ABID97_RS12480 | homoserine dehydrogenase | -5.4 | |
| L-Threonine | ABID97_RS13900 | hypothetical protein | +1.2 | |
| L-Threonine | ABID97_RS13910 | tyrosine-type recombinase/integrase | -1.1 | |
| L-Threonine | ABID97_RS13930 | methylmalonyl-CoA mutase | -3.6 | |
| L-Threonine | ABID97_RS16475 | tRNA pseudouridine(55) synthase TruB | +1.2 | Yes |
| L-Threonine | ABID97_RS16605 | pyridoxal phosphate-dependent aminotransferase | -1.0 | |
| L-Threonine | ABID97_RS20125 | 4-hydroxy-tetrahydrodipicolinate synthase | +3.8 | |
| L-Tryptophan | ABID97_RS01425 | bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase | -3.4 | Yes |
| L-Tryptophan | ABID97_RS01435 | enoyl-CoA hydratase family protein | -6.3 | Yes |
| L-Tryptophan | ABID97_RS01440 | acyl-CoA dehydrogenase family protein | -3.6 | Yes |
| L-Tryptophan | ABID97_RS01445 | AMP-binding protein | -3.0 | Yes |
| L-Tryptophan | ABID97_RS03205 | acyl-CoA dehydrogenase | -5.8 | Yes |
| L-Tryptophan | ABID97_RS08590 | tryptophan 2,3-dioxygenase | -8.1 | Yes |
| L-Tryptophan | ABID97_RS08600 | kynureninase | -5.3 | Yes |
| L-Tryptophan | ABID97_RS08605 | arylformamidase | -7.2 | Yes |
| L-Tryptophan | ABID97_RS08920 | SDR family NAD(P)-dependent oxidoreductase | -2.7 | Yes |
| L-Tryptophan | ABID97_RS23245 | MFS transporter | -1.0 | |
| L-tyrosine disodium salt | ABID97_RS01570 | LysR substrate-binding domain-containing protein | -2.1 | |
| L-tyrosine disodium salt | ABID97_RS04020 | GMC family oxidoreductase N-terminal domain-containing protein | -1.1 | |
| L-tyrosine disodium salt | ABID97_RS06325 | histidine kinase | -1.4 | |
| L-tyrosine disodium salt | ABID97_RS06545 | ROK family protein | +1.3 | |
| L-tyrosine disodium salt | ABID97_RS09420 | carbon monoxide dehydrogenase subunit G | -1.2 | |
| L-tyrosine disodium salt | ABID97_RS15705 | 3-(methylthio)propionyl-CoA ligase | +1.3 | |
| L-tyrosine disodium salt | ABID97_RS17020 | phosphotransferase | -1.1 | |
| L-tyrosine disodium salt | ABID97_RS25985 | CaiB/BaiF CoA-transferase family protein | +5.4 | |
| L-tyrosine disodium salt | ABID97_RS28710 | xanthine dehydrogenase family protein subunit M | -1.1 | |
| L-tyrosine disodium salt | ABID97_RS28745 | GMC family oxidoreductase N-terminal domain-containing protein | +2.5 | |
| Potassium acetate | ABID97_RS07085 | HAD family phosphatase | -1.3 | |
| Potassium acetate | ABID97_RS08520 | trans-aconitate 2-methyltransferase | -1.4 | |
| Potassium acetate | ABID97_RS17525 | acetate--CoA ligase | -5.3 | |
| Sodium D,L-Lactate | ABID97_RS03650 | FAD-linked oxidase C-terminal domain-containing protein | -2.9 | Yes |
| Sodium D,L-Lactate | ABID97_RS03660 | glycolate oxidase subunit GlcF | -2.9 | Yes |
| Sodium D,L-Lactate | ABID97_RS08015 | LysR substrate-binding domain-containing protein | -6.0 | |
| Sodium D-Lactate | ABID97_RS03650 | FAD-linked oxidase C-terminal domain-containing protein | -6.8 | Yes |
| Sodium D-Lactate | ABID97_RS03660 | glycolate oxidase subunit GlcF | -5.3 | Yes |
| Sodium Formate | ABID97_RS07505 | LysR substrate-binding domain-containing protein | +1.9 | Yes |
| Sodium Formate | ABID97_RS07510 | NAD(P)H-dependent oxidoreductase subunit E | +2.0 | |
| Sodium Formate | ABID97_RS07515 | formate dehydrogenase subunit alpha | +2.4 | Yes |
| Sodium Formate | ABID97_RS07585 | hypothetical protein | +1.4 | |
| Sodium Formate | ABID97_RS07590 | formate dehydrogenase accessory sulfurtransferase FdhD | +1.2 | Yes |
| Sodium Formate | ABID97_RS23085 | histidine triad nucleotide-binding protein | -1.5 | |
| Sodium L-Lactate | ABID97_RS08015 | LysR substrate-binding domain-containing protein | -7.5 | |
| Sodium butyrate | ABID97_RS00340 | DUF2946 family protein | -2.2 | |
| Sodium butyrate | ABID97_RS00405 | NAD(+) synthase | +3.1 | |
| Sodium butyrate | ABID97_RS02515 | ribonuclease domain-containing protein | +1.8 | |
| Sodium butyrate | ABID97_RS03370 | phosphoenolpyruvate carboxykinase (GTP) | +7.5 | |
| Sodium butyrate | ABID97_RS03525 | ABC transporter substrate-binding protein | +2.0 | |
| Sodium butyrate | ABID97_RS03530 | ABC transporter permease | +2.0 | |
| Sodium butyrate | ABID97_RS03540 | ABC transporter ATP-binding protein | +2.5 | |
| Sodium butyrate | ABID97_RS04535 | glycogen synthase GlgA | +1.0 | |
| Sodium butyrate | ABID97_RS04555 | alpha-amylase family glycosyl hydrolase | +1.0 | |
| Sodium butyrate | ABID97_RS04560 | NAD(P)/FAD-dependent oxidoreductase | +1.6 | |
| Sodium butyrate | ABID97_RS05850 | TetR/AcrR family transcriptional regulator | +8.1 | |
| Sodium butyrate | ABID97_RS06495 | histidine phosphatase family protein | +2.7 | |
| Sodium butyrate | ABID97_RS07010 | porin | +1.8 | |
| Sodium butyrate | ABID97_RS07030 | ABC transporter permease | +1.3 | |
| Sodium butyrate | ABID97_RS07075 | iron ABC transporter permease | +1.4 | |
| Sodium butyrate | ABID97_RS07180 | Grx4 family monothiol glutaredoxin | +2.8 | |
| Sodium butyrate | ABID97_RS07480 | isocitrate/isopropylmalate family dehydrogenase | +7.8 | |
| Sodium butyrate | ABID97_RS07485 | phosphodiester glycosidase family protein | +1.4 | |
| Sodium butyrate | ABID97_RS08520 | trans-aconitate 2-methyltransferase | +5.0 | |
| Sodium butyrate | ABID97_RS08785 | M48 family metallopeptidase | +1.8 | |
| Sodium butyrate | ABID97_RS10065 | DUF2069 domain-containing protein | +1.2 | |
| Sodium butyrate | ABID97_RS12145 | maltose alpha-D-glucosyltransferase | +2.0 | |
| Sodium butyrate | ABID97_RS12160 | malto-oligosyltrehalose trehalohydrolase | +1.6 | |
| Sodium butyrate | ABID97_RS14865 | RDD family protein | +3.9 | |
| Sodium butyrate | ABID97_RS18120 | transporter substrate-binding domain-containing protein | +7.3 | |
| Sodium butyrate | ABID97_RS20205 | nicotinamide riboside transporter PnuC | +1.1 | |
| Sodium butyrate | ABID97_RS25305 | NAD(P)H-dependent oxidoreductase | +1.9 | |
| Sodium butyrate | ABID97_RS25315 | creatininase family protein | +1.6 | |
| Sodium butyrate | ABID97_RS26555 | lipoyl synthase | +3.5 | |
| Sodium butyrate | ABID97_RS28310 | alpha/beta hydrolase | +1.8 | |
| Sodium propionate | ABID97_RS13930 | methylmalonyl-CoA mutase | +8.6 | Yes |
| Sodium propionate | ABID97_RS25175 | MBL fold metallo-hydrolase | +6.1 | |
| Sodium propionate | ABID97_RS27700 | HAMP domain-containing sensor histidine kinase | +1.3 | |
| Sodium propionate | ABID97_RS27895 | AraC family transcriptional regulator | +6.0 | |
| Sodium pyruvate | ABID97_RS22450 | YbdD/YjiX family protein | -2.6 | Yes |
| Sodium pyruvate | ABID97_RS22455 | carbon starvation CstA family protein | -2.5 | Yes |
| Sodium pyruvate | ABID97_RS22515 | response regulator transcription factor | -2.4 | Yes |
| Tween 20 | ABID97_RS00320 | efflux RND transporter periplasmic adaptor subunit | -3.3 | |
| Tween 20 | ABID97_RS00325 | efflux RND transporter permease subunit | -3.3 | |
| Tween 20 | ABID97_RS00330 | efflux transporter outer membrane subunit | -1.7 | |
| Tween 20 | ABID97_RS02005 | YhdP family protein | -1.2 | |
| Tween 20 | ABID97_RS03820 | beta-ketoacyl synthase chain length factor | +1.5 | |
| Tween 20 | ABID97_RS03825 | beta-ketoacyl-[acyl-carrier-protein] synthase family protein | +1.9 | Yes |
| Tween 20 | ABID97_RS04445 | long-chain-fatty-acid--CoA ligase | -2.8 | Yes |
| Tween 20 | ABID97_RS05745 | acyltransferase family protein | -1.1 | |
| Tween 20 | ABID97_RS05865 | 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein | -1.4 | |
| Tween 20 | ABID97_RS11010 | phosphatase PAP2 family protein | -1.1 | |
| Tween 20 | ABID97_RS16755 | lysophospholipid acyltransferase family protein | +1.6 | |
| Tween 20 | ABID97_RS16760 | glycosyltransferase family 2 protein | +1.5 | |
| Tween 20 | ABID97_RS16765 | 3-oxoacyl-ACP reductase FabG | +1.5 | |
| Tween 20 | ABID97_RS16795 | acyl-CoA synthetase | +1.6 | |
| Tween 20 | ABID97_RS16800 | AMP-binding protein | +1.8 | |
| Tween 20 | ABID97_RS16805 | hypothetical protein | +1.3 | |
| Tween 20 | ABID97_RS16810 | phosphopantetheine-binding protein | +1.8 | |
| Tween 20 | ABID97_RS19895 | histone deacetylase family protein | -1.3 | |
| Tween 20 | ABID97_RS21075 | NAD(P)/FAD-dependent oxidoreductase | -8.3 | |
| Tween 20 | ABID97_RS23145 | histidinol-phosphate transaminase | -1.5 | |
| Tween 20 | ABID97_RS23210 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | -1.8 | |
| Tween 20 | ABID97_RS23215 | ABC transporter ATP-binding protein | -1.4 | |
| Tween 20 | ABID97_RS24235 | WbqC family protein | -2.4 | |
| Tween 20 | ABID97_RS24240 | hypothetical protein | -2.5 | |
| Tween 20 | ABID97_RS24245 | methyltransferase domain-containing protein | -2.4 | |
| a-Ketoglutaric acid disodium salt hydrate | ABID97_RS02635 | monovalent cation:proton antiporter-2 (CPA2) family protein | +1.3 | |
| a-Ketoglutaric acid disodium salt hydrate | ABID97_RS12465 | dicarboxylate/amino acid:cation symporter | -2.2 | |
| a-Ketoglutaric acid disodium salt hydrate | ABID97_RS17465 | malonyl-CoA synthase | +2.3 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | ABID97_RS20370 | branched-chain amino acid ABC transporter permease | -1.2 | |
| a-Ketoglutaric acid disodium salt hydrate | ABID97_RS22695 | tripartite tricarboxylate transporter permease | +2.1 | |
| a-Ketoglutaric acid disodium salt hydrate | ABID97_RS22700 | tripartite tricarboxylate transporter TctB family protein | +1.7 | |
| a-Ketoglutaric acid disodium salt hydrate | ABID97_RS26555 | lipoyl synthase | +4.4 | |