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Specific Phenotypes for
Rhizobium sp. OAE497
in carbon source experiments
Condition
Gene
Description
Fitness
Cons.
4-Hydroxybenzoic Acid
ABIE40
_RS08800
amino acid ABC transporter ATP-binding protein
-3.8
4-Hydroxybenzoic Acid
ABIE40
_RS08805
amino acid ABC transporter permease
-3.4
4-Hydroxybenzoic Acid
ABIE40
_RS08810
amino acid ABC transporter permease
-4.8
4-Hydroxybenzoic Acid
ABIE40
_RS08815
amino acid ABC transporter substrate-binding protein
-3.4
4-Hydroxybenzoic Acid
ABIE40
_RS14690
branched-chain amino acid ABC transporter substrate-binding protein
-1.8
4-Hydroxybenzoic Acid
ABIE40
_RS18900
GNAT family protein
+1.8
4-Hydroxybenzoic Acid
ABIE40
_RS21490
XRE family transcriptional regulator
-1.5
4-Hydroxybenzoic Acid
ABIE40
_RS22240
branched-chain amino acid aminotransferase
-1.3
4-Hydroxybenzoic Acid
ABIE40
_RS23410
ABC transporter ATP-binding protein
-1.3
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS00215
D-glycerate dehydrogenase
+1.7
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS00780
BMP family ABC transporter substrate-binding protein
-4.1
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS00785
ABC transporter ATP-binding protein
-5.2
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS00790
ABC transporter permease
-5.0
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS00795
ABC transporter permease
-5.3
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS00800
cytidine deaminase
-4.2
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS01880
ribokinase
-7.3
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS02735
low molecular weight phosphatase family protein
+1.5
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS08255
Lrp/AsnC family transcriptional regulator
-2.4
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS08260
alanine dehydrogenase
-2.7
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS09460
pantoate--beta-alanine ligase
-1.1
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS11035
NADP-dependent phosphogluconate dehydrogenase
+2.2
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS11115
nucleoside hydrolase
-3.0
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS11350
branched-chain amino acid aminotransferase
+1.4
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS13520
aspartate aminotransferase family protein
-3.0
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS14470
NAD(P)-dependent oxidoreductase
+3.1
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS14475
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
+3.0
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS14525
Zn-dependent hydrolase
+2.5
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS14530
hypothetical protein
+2.0
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS14535
dihydropyrimidinase
+2.7
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS16665
WD40 repeat domain-containing protein
-2.3
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS19240
pyruvate, water dikinase regulatory protein
+2.9
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS23255
quinolinate synthase NadA
-1.6
5-Keto-D-Gluconic Acid potassium salt
ABIE40
_RS23260
L-aspartate oxidase
-1.3
Adenine hydrochloride hydrate
ABIE40
_RS11000
ABC transporter ATP-binding protein
-2.6
Adenine hydrochloride hydrate
ABIE40
_RS11005
carbohydrate ABC transporter permease
-2.4
Adenine hydrochloride hydrate
ABIE40
_RS11010
sugar ABC transporter permease
-2.5
Adenine hydrochloride hydrate
ABIE40
_RS11015
ABC transporter substrate-binding protein
-2.5
Adenosine
ABIE40
_RS24840
FGGY-family carbohydrate kinase
-3.4
Adenosine
ABIE40
_RS24850
ABC transporter permease
-2.7
Adenosine
ABIE40
_RS24855
ABC transporter permease
-3.5
Adenosine
ABIE40
_RS24860
sugar ABC transporter ATP-binding protein
-2.1
Adenosine
ABIE40
_RS24865
rhamnose ABC transporter substrate-binding protein
-3.3
Adenosine
ABIE40
_RS24880
L-rhamnose catabolism isomerase
-3.4
D-Fructose
ABIE40
_RS01880
ribokinase
-5.2
D-Fructose
ABIE40
_RS02095
nucleoside triphosphate hydrolase
-1.4
D-Fructose
ABIE40
_RS09460
pantoate--beta-alanine ligase
-1.1
D-Fructose
ABIE40
_RS14525
Zn-dependent hydrolase
-1.1
D-Fructose
ABIE40
_RS17655
J domain-containing protein
+3.0
D-Fructose
ABIE40
_RS28040
Crp/Fnr family transcriptional regulator
variable
D-Galactose
ABIE40
_RS02080
sugar ABC transporter substrate-binding protein
-4.1
D-Galactose
ABIE40
_RS02085
ABC transporter permease
-2.6
D-Galactose
ABIE40
_RS02090
ATP-binding cassette domain-containing protein
-2.7
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS00130
glucuronate isomerase
-4.1
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS02235
altronate dehydratase family protein
-5.6
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS13595
sugar kinase
-3.5
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS20620
amino acid ABC transporter ATP-binding protein
-1.4
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS20625
amino acid ABC transporter permease
-1.7
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS20630
amino acid ABC transporter permease
-1.7
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS20640
5-dehydro-4-deoxy-D-glucuronate isomerase
-1.5
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS21580
glycerate kinase
-1.5
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS22410
extracellular solute-binding protein
-5.3
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS22415
ABC transporter ATP-binding protein
-4.4
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS22420
sugar ABC transporter permease
-4.9
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS22425
ABC transporter permease subunit
-4.6
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS25015
Gfo/Idh/MocA family oxidoreductase
-3.2
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS25020
sugar phosphate isomerase/epimerase family protein
-2.4
D-Glucose-6-Phosphate sodium salt
ABIE40
_RS25035
sugar ABC transporter substrate-binding protein
-1.7
D-Glucuronic Acid
ABIE40
_RS01780
NADP-dependent malic enzyme
-1.5
D-Glucuronic Acid
ABIE40
_RS14690
branched-chain amino acid ABC transporter substrate-binding protein
-2.6
Yes
D-Glucuronic Acid
ABIE40
_RS15410
tripartite tricarboxylate transporter permease
+1.1
D-Glucuronic Acid
ABIE40
_RS15420
tripartite tricarboxylate transporter substrate binding protein BugD
+1.8
D-Glucuronic Acid
ABIE40
_RS15425
sigma-54 dependent transcriptional regulator
+2.5
D-Glucuronic Acid
ABIE40
_RS15430
sensor histidine kinase
+1.5
D-Glucuronic Acid
ABIE40
_RS25905
ROK family transcriptional regulator
-1.4
D-Glucuronic Acid
ABIE40
_RS26265
LacI family DNA-binding transcriptional regulator
-1.4
D-Raffinose pentahydrate
ABIE40
_RS02210
ABC transporter permease
-1.6
D-Raffinose pentahydrate
ABIE40
_RS02215
sugar ABC transporter ATP-binding protein
-1.6
D-Raffinose pentahydrate
ABIE40
_RS02220
ABC transporter substrate-binding protein
-1.5
D-Raffinose pentahydrate
ABIE40
_RS02230
aldo/keto reductase
-1.1
D-Raffinose pentahydrate
ABIE40
_RS02235
altronate dehydratase family protein
-4.3
D-Raffinose pentahydrate
ABIE40
_RS20005
amidohydrolase
-2.1
D-Ribose
ABIE40
_RS00205
molybdopterin-synthase adenylyltransferase MoeB
-1.0
D-Ribose
ABIE40
_RS01565
Zn-dependent hydrolase
-5.9
D-Ribose
ABIE40
_RS01570
amidohydrolase family protein
-2.0
D-Ribose
ABIE40
_RS02195
LysR family transcriptional regulator
-2.3
D-Ribose
ABIE40
_RS10320
recombinase RecA
-2.0
D-Ribose
ABIE40
_RS10585
GTP 3',8-cyclase MoaA
-1.1
D-Ribose
ABIE40
_RS16820
LacI family DNA-binding transcriptional regulator
-1.5
D-Ribose
ABIE40
_RS20340
histidine utilization repressor
+1.9
D-Ribose
ABIE40
_RS20345
formimidoylglutamate deiminase
-7.4
D-Ribose
ABIE40
_RS20350
imidazolonepropionase
-6.2
D-Ribose
ABIE40
_RS20355
histidine ammonia-lyase
-6.1
D-Ribose
ABIE40
_RS20360
urocanate hydratase
-5.8
D-Ribose
ABIE40
_RS20375
HutD family protein
-2.0
D-Ribose
ABIE40
_RS20395
histidine utilization repressor
+1.1
D-Ribose
ABIE40
_RS23905
transporter substrate-binding domain-containing protein
-1.4
D-Ribose
ABIE40
_RS23910
ABC transporter permease subunit
-1.5
D-Ribose
ABIE40
_RS23920
ATP-binding cassette domain-containing protein
-1.6
D-Serine
ABIE40
_RS06475
CGNR zinc finger domain-containing protein
-1.7
D-Serine
ABIE40
_RS08800
amino acid ABC transporter ATP-binding protein
-4.0
D-Serine
ABIE40
_RS08805
amino acid ABC transporter permease
-3.1
D-Serine
ABIE40
_RS08810
amino acid ABC transporter permease
-3.7
D-Serine
ABIE40
_RS08815
amino acid ABC transporter substrate-binding protein
-2.9
D-Serine
ABIE40
_RS10235
glutaminase
-4.7
D-Serine
ABIE40
_RS14695
DUF6867 family protein
-1.2
D-Serine
ABIE40
_RS18900
GNAT family protein
+1.6
D-Serine
ABIE40
_RS25355
PLP-dependent aminotransferase family protein
-1.5
D-Sorbitol
ABIE40
_RS02635
PAS domain-containing hybrid sensor histidine kinase/response regulator
-1.7
D-Sorbitol
ABIE40
_RS14690
branched-chain amino acid ABC transporter substrate-binding protein
-2.4
D-Sorbitol
ABIE40
_RS19065
MFS transporter
-2.4
D-Sorbitol
ABIE40
_RS19160
acetate--CoA ligase
-1.0
D-Trehalose dihydrate
ABIE40
_RS12085
ATP-binding cassette domain-containing protein
-3.9
D-Trehalose dihydrate
ABIE40
_RS12090
Gfo/Idh/MocA family oxidoreductase
-3.3
D-Trehalose dihydrate
ABIE40
_RS12095
carbohydrate ABC transporter permease
-4.1
D-Trehalose dihydrate
ABIE40
_RS12100
sugar ABC transporter permease
-4.0
D-Trehalose dihydrate
ABIE40
_RS12105
ABC transporter substrate-binding protein
-3.3
D-Trehalose dihydrate
ABIE40
_RS12110
BadF/BadG/BcrA/BcrD ATPase family protein
-1.6
D-Trehalose dihydrate
ABIE40
_RS18565
SIS domain-containing protein
-4.2
D-Trehalose dihydrate
ABIE40
_RS19160
acetate--CoA ligase
-1.1
Ethanol
ABIE40
_RS03160
ABC transporter substrate-binding protein
-1.5
Ethanol
ABIE40
_RS03170
carbohydrate ABC transporter permease
-1.7
Ethanol
ABIE40
_RS03180
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
-1.4
Ethanol
ABIE40
_RS20035
ABC transporter ATP-binding protein
-1.5
Gelatin
ABIE40
_RS02095
nucleoside triphosphate hydrolase
+1.1
Gelatin
ABIE40
_RS21355
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
-2.9
Gelatin
ABIE40
_RS21360
NAD(P)-dependent alcohol dehydrogenase
-5.2
Gelatin
ABIE40
_RS21365
carbohydrate ABC transporter permease
-4.0
Gelatin
ABIE40
_RS21370
sugar ABC transporter permease
-4.7
Gelatin
ABIE40
_RS21375
sugar ABC transporter substrate-binding protein
-4.9
Gelatin
ABIE40
_RS21380
AraC family transcriptional regulator
-5.4
Glycolic Acid
ABIE40
_RS03550
LysR family transcriptional regulator
+2.2
Yes
Glycolic Acid
ABIE40
_RS03560
FAD-binding protein
-4.2
Glycolic Acid
ABIE40
_RS03565
glycolate oxidase subunit GlcF
-3.8
Yes
Glycolic Acid
ABIE40
_RS13475
AEC family transporter
+1.6
Glycolic Acid
ABIE40
_RS13480
LysR substrate-binding domain-containing protein
+1.6
Glycolic Acid
ABIE40
_RS20020
MaoC family dehydratase
+3.2
L-Alanine
ABIE40
_RS02155
long-chain fatty acid--CoA ligase
-1.1
L-Alanine
ABIE40
_RS04575
asparaginase
+1.7
L-Alanine
ABIE40
_RS08505
protein translocase subunit SecD
+1.2
L-Alanine
ABIE40
_RS10695
uracil-DNA glycosylase family protein
+1.1
L-Alanine
ABIE40
_RS19275
Tim44/TimA family putative adaptor protein
+1.3
L-Arabinose
ABIE40
_RS01665
DUF1150 family protein
+1.7
L-Arabinose
ABIE40
_RS02810
PAS domain S-box protein
+1.2
L-Arabinose
ABIE40
_RS02825
response regulator
+1.6
L-Arabinose
ABIE40
_RS02830
ATP-binding protein
+1.6
L-Arabinose
ABIE40
_RS07330
PleD family two-component system response regulator
-1.3
L-Arabinose
ABIE40
_RS16080
hypothetical protein
+2.7
L-Arabinose
ABIE40
_RS19215
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
+1.6
L-Arabinose
ABIE40
_RS19220
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
+1.7
L-Arabinose
ABIE40
_RS19550
3-oxoadipyl-CoA thiolase
-4.7
L-Arabinose
ABIE40
_RS19555
CoA transferase subunit B
-4.9
L-Arabinose
ABIE40
_RS19560
3-oxoacid CoA-transferase subunit A
-4.8
L-Arabinose
ABIE40
_RS19570
helix-turn-helix domain-containing protein
+2.6
L-Arabinose
ABIE40
_RS19575
4-hydroxybenzoate 3-monooxygenase
+2.2
L-Arabinose
ABIE40
_RS19620
pca operon transcription factor PcaQ
-3.9
L-Arabinose
ABIE40
_RS19625
3-oxoadipate enol-lactonase
-4.7
L-Arabinose
ABIE40
_RS19630
4-carboxymuconolactone decarboxylase
-6.0
L-Arabinose
ABIE40
_RS19635
protocatechuate 3,4-dioxygenase subunit beta
-5.7
L-Arabinose
ABIE40
_RS19640
protocatechuate 3,4-dioxygenase subunit alpha
-5.6
L-Arabinose
ABIE40
_RS22670
HlyD family secretion protein
+1.9
L-Arabinose
ABIE40
_RS22675
DUF1656 domain-containing protein
+2.1
L-Arabinose
ABIE40
_RS22680
FUSC family protein
+2.2
L-Asparagine
ABIE40
_RS02910
flagellar basal-body MS-ring/collar protein FliF
+1.1
L-Asparagine
ABIE40
_RS05260
SMP-30/gluconolactonase/LRE family protein
-1.7
L-Asparagine
ABIE40
_RS05270
2-dehydro-3-deoxygalactonokinase
-1.6
L-Asparagine
ABIE40
_RS10985
Gfo/Idh/MocA family oxidoreductase
-2.4
L-Asparagine
ABIE40
_RS10990
sugar phosphate isomerase/epimerase
-2.1
L-Asparagine
ABIE40
_RS10995
glycoside hydrolase family 2 protein
-1.2
L-Asparagine
ABIE40
_RS11000
ABC transporter ATP-binding protein
+1.9
L-Asparagine
ABIE40
_RS11005
carbohydrate ABC transporter permease
+1.4
L-Asparagine
ABIE40
_RS11010
sugar ABC transporter permease
+1.6
L-Asparagine
ABIE40
_RS16750
GH1 family beta-glucosidase
-1.5
L-Asparagine
ABIE40
_RS17160
Gfo/Idh/MocA family oxidoreductase
+1.9
L-Asparagine
ABIE40
_RS17170
glycoside hydrolase family 2 protein
-1.8
L-Asparagine
ABIE40
_RS22695
helix-turn-helix domain-containing protein
-3.6
L-Asparagine
ABIE40
_RS22700
ABC transporter substrate-binding protein
-3.8
L-Asparagine
ABIE40
_RS22705
sugar ABC transporter permease
-3.2
L-Asparagine
ABIE40
_RS22710
carbohydrate ABC transporter permease
-2.7
L-Asparagine
ABIE40
_RS22715
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
-2.5
L-Asparagine
ABIE40
_RS22720
aldo/keto reductase
-4.5
L-Aspartic Acid
ABIE40
_RS13515
metalloregulator ArsR/SmtB family transcription factor
+1.1
L-Aspartic Acid
ABIE40
_RS15905
MFS transporter
-1.7
L-Aspartic Acid
ABIE40
_RS21360
NAD(P)-dependent alcohol dehydrogenase
-3.3
L-Aspartic Acid
ABIE40
_RS21375
sugar ABC transporter substrate-binding protein
-2.8
L-Aspartic Acid
ABIE40
_RS21380
AraC family transcriptional regulator
-2.7
L-Aspartic Acid
ABIE40
_RS24640
NAD(P)-dependent alcohol dehydrogenase
-3.0
L-Aspartic Acid
ABIE40
_RS25180
bifunctional aldolase/short-chain dehydrogenase
+1.0
L-Citrulline
ABIE40
_RS03175
alpha-glucosidase
-1.0
L-Citrulline
ABIE40
_RS14345
Gfo/Idh/MocA family oxidoreductase
-2.8
L-Citrulline
ABIE40
_RS22540
AraC family transcriptional regulator
-4.0
L-Citrulline
ABIE40
_RS22545
alpha-glucosidase/alpha-galactosidase
-3.6
L-Citrulline
ABIE40
_RS22550
ABC transporter substrate-binding protein
-3.4
L-Citrulline
ABIE40
_RS22555
ABC transporter permease
-3.4
L-Citrulline
ABIE40
_RS22560
ABC transporter permease
-3.2
L-Citrulline
ABIE40
_RS22565
ABC transporter ATP-binding protein
-2.8
L-Citrulline
ABIE40
_RS22570
alpha-glucosidase/alpha-galactosidase
-4.0
L-Glutamine
ABIE40
_RS16810
xylose isomerase
-5.2
L-Glutamine
ABIE40
_RS16820
LacI family DNA-binding transcriptional regulator
-2.2
L-Leucine
ABIE40
_RS12140
AGE family epimerase/isomerase
-5.1
L-Lysine
ABIE40
_RS00405
YdcF family protein
-1.0
L-Lysine
ABIE40
_RS00860
prepilin peptidase
-1.1
L-Lysine
ABIE40
_RS06665
hypothetical protein
+1.0
L-Lysine
ABIE40
_RS06830
glycosyl hydrolase family 8
-1.5
L-Methionine
ABIE40
_RS05260
SMP-30/gluconolactonase/LRE family protein
-1.6
L-Methionine
ABIE40
_RS05270
2-dehydro-3-deoxygalactonokinase
-4.0
L-Methionine
ABIE40
_RS06440
Gfo/Idh/MocA family oxidoreductase
-2.8
L-Methionine
ABIE40
_RS13950
multiple monosaccharide ABC transporter substrate-binding protein
-1.5
L-Methionine
ABIE40
_RS13955
multiple monosaccharide ABC transporter ATP-binding protein
-1.6
L-Methionine
ABIE40
_RS13960
multiple monosaccharide ABC transporter permease
-1.8
L-Threonine
ABIE40
_RS09750
PilZ domain-containing protein
variable
L-Threonine
ABIE40
_RS13945
LysR family transcriptional regulator
+1.2
L-Threonine
ABIE40
_RS14760
response regulator
variable
L-Tryptophan
ABIE40
_RS02155
long-chain fatty acid--CoA ligase
-5.2
L-Tryptophan
ABIE40
_RS03855
acyl-CoA dehydrogenase
-2.8
L-Tryptophan
ABIE40
_RS03955
energy-coupling factor transporter transmembrane protein EcfT
+1.1
L-Tryptophan
ABIE40
_RS04350
MBL fold metallo-hydrolase
-2.7
L-Tryptophan
ABIE40
_RS07265
methylmalonyl-CoA epimerase
+1.6
L-Tryptophan
ABIE40
_RS09850
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
+2.3
L-Tryptophan
ABIE40
_RS09895
acyl-CoA carboxylase subunit beta
+2.2
L-Tryptophan
ABIE40
_RS10565
alpha/beta fold hydrolase
+1.1
L-Tryptophan
ABIE40
_RS19760
ABC transporter substrate-binding protein
-1.2
L-Tryptophan
ABIE40
_RS19770
ABC transporter permease
-1.5
Sodium D-Lactate
ABIE40
_RS20020
MaoC family dehydratase
+6.9
Sodium Formate
ABIE40
_RS02235
altronate dehydratase family protein
-2.0
Sodium Formate
ABIE40
_RS11370
AraC family transcriptional regulator
-4.4
Sodium Formate
ABIE40
_RS11375
NAD(P)-dependent alcohol dehydrogenase
-4.2
Sodium Formate
ABIE40
_RS16665
WD40 repeat domain-containing protein
-2.2
Sodium Formate
ABIE40
_RS19310
fumarylacetoacetate hydrolase family protein
-2.5
Sodium Formate
ABIE40
_RS24440
LacI family DNA-binding transcriptional regulator
-1.6
Sodium pyruvate
ABIE40
_RS03290
acetoacetate--CoA ligase
-2.9
Sodium pyruvate
ABIE40
_RS20770
hydroxymethylglutaryl-CoA lyase
-4.4
Sodium pyruvate
ABIE40
_RS20775
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
-4.8
Sodium pyruvate
ABIE40
_RS20780
carboxyl transferase domain-containing protein
-4.8
Sodium pyruvate
ABIE40
_RS20785
type II toxin-antitoxin system HicA family toxin
-5.5
Sodium pyruvate
ABIE40
_RS20795
isovaleryl-CoA dehydrogenase
-3.9
Sodium pyruvate
ABIE40
_RS20800
indolepyruvate ferredoxin oxidoreductase family protein
-4.5
Yes
Sodium succinate dibasic hexahydrate
ABIE40
_RS07820
type II toxin-antitoxin system RelE/ParE family toxin
+1.2
Thymidine
ABIE40
_RS03160
ABC transporter substrate-binding protein
-2.4
Thymidine
ABIE40
_RS03170
carbohydrate ABC transporter permease
-1.5
Thymidine
ABIE40
_RS03175
alpha-glucosidase
-1.0
Thymidine
ABIE40
_RS03180
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
-2.1
Thymidine
ABIE40
_RS14345
Gfo/Idh/MocA family oxidoreductase
-1.8
Trisodium citrate dihydrate
ABIE40
_RS05260
SMP-30/gluconolactonase/LRE family protein
-2.3
Trisodium citrate dihydrate
ABIE40
_RS06440
Gfo/Idh/MocA family oxidoreductase
-2.7
Trisodium citrate dihydrate
ABIE40
_RS13950
multiple monosaccharide ABC transporter substrate-binding protein
-1.6
Trisodium citrate dihydrate
ABIE40
_RS13955
multiple monosaccharide ABC transporter ATP-binding protein
-1.5
Trisodium citrate dihydrate
ABIE40
_RS13960
multiple monosaccharide ABC transporter permease
-2.3
Trisodium citrate dihydrate
ABIE40
_RS13965
AraD1 family protein
-3.9
Trisodium citrate dihydrate
ABIE40
_RS13970
aldehyde dehydrogenase family protein
-4.4
Trisodium citrate dihydrate
ABIE40
_RS25325
DUF3422 family protein
-1.9
a-Cyclodextrin
ABIE40
_RS03325
LysR family transcriptional regulator
-2.3
a-Cyclodextrin
ABIE40
_RS05975
5-deoxy-glucuronate isomerase
-5.2
a-Cyclodextrin
ABIE40
_RS05980
myo-inosose-2 dehydratase
-4.9
a-Cyclodextrin
ABIE40
_RS05985
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
-4.5
a-Cyclodextrin
ABIE40
_RS05990
5-dehydro-2-deoxygluconokinase
-4.1
a-Cyclodextrin
ABIE40
_RS13930
inositol 2-dehydrogenase
-3.2
a-Cyclodextrin
ABIE40
_RS18855
ABC transporter permease
-3.3
a-Cyclodextrin
ABIE40
_RS18860
sugar ABC transporter ATP-binding protein
-3.2
a-Cyclodextrin
ABIE40
_RS18865
sugar ABC transporter substrate-binding protein
-3.2
casamino acids
ABIE40
_RS06830
glycosyl hydrolase family 8
-1.6
casamino acids
ABIE40
_RS11570
dTDP-4-dehydrorhamnose 3,5-epimerase
-3.2
casamino acids
ABIE40
_RS13030
peptidoglycan editing factor PgeF
-1.7
Yes
casamino acids
ABIE40
_RS17790
translocation/assembly module TamB domain-containing protein
-1.4
water
ABIE40
_RS10985
Gfo/Idh/MocA family oxidoreductase
-5.1
water
ABIE40
_RS10990
sugar phosphate isomerase/epimerase
-4.5
water
ABIE40
_RS10995
glycoside hydrolase family 2 protein
-2.7
water
ABIE40
_RS11000
ABC transporter ATP-binding protein
-2.4
water
ABIE40
_RS11005
carbohydrate ABC transporter permease
-3.0
water
ABIE40
_RS11010
sugar ABC transporter permease
-3.3
water
ABIE40
_RS11015
ABC transporter substrate-binding protein
-4.4
water
ABIE40
_RS16770
Gfo/Idh/MocA family oxidoreductase
-4.3
water
ABIE40
_RS16775
sugar phosphate isomerase/epimerase
-4.0
water
ABIE40
_RS20040
carbohydrate ABC transporter permease
-2.0