Specific Phenotypes for Pseudomonas putida KT2440 in carbon source experiments

Condition	Gene	Description	Fitness	Cons.
(-)-alpha-bisabolol	PP_0506	putative ABC efflux transporter, permease protein	-2.2
(-)-alpha-bisabolol	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	-2.4
(-)-alpha-bisabolol	PP_3065	Pyocin R2_PP, tail formation	-1.4
(-)-alpha-bisabolol	PP_3443	putative glyceraldehyde-3-phosphate dehydrogenase	-1.9
(-)-alpha-bisabolol	PP_5200	proline aminopeptidase P II	-1.0
1,2-Propanediol	PP_0612	FAD-dependent glycine/D-amino acid oxidase	-1.5
1,2-Propanediol	PP_1427	RNA polymerase sigma E factor	-1.3
1,2-Propanediol	PP_2671	Sensor histidine kinase	-1.1
1,2-Propanediol	PP_2683	putative sensory box histidine kinase/response regulator	-1.5
1,2-Propanediol	PP_4735	L-lactate permease	-4.9
1,2-Propanediol	PP_4736	L-lactate dehydrogenase	-5.8
1,2-Propanediol	PP_4737	D-lactate dehydrogenase	-1.5
1,3-Butandiol	PP_0248	Probable alpha-L-glutamate ligase	-1.2
1,3-Butandiol	PP_1430	putative periplasmic serine endoprotease DegP-like	variable
1,3-Butandiol	PP_1560	conserved protein of unknown function	variable
1,3-Butandiol	PP_1572	conserved protein of unknown function	variable
1,3-Butandiol	PP_1584	conserved protein of unknown function	variable
1,3-Butandiol	PP_3073	3-hydroxybutyrate dehydrogenase	-3.1
1,3-Butandiol	PP_3075	putative transcriptional regulator	-2.1
1,3-Butandiol	PP_3121	transcriptional regulator, LysR family	-4.0
1,3-Butandiol	PP_3122	acetoacetyl CoA-transferase (subunit A)	-4.1
1,3-Butandiol	PP_3123	acetoacetyl CoA-transferase (subunit B)	-5.4
1,3-Butandiol	PP_3776	putative permease (RarD protein)	-1.6
1,3-Butandiol	PP_3828	Molybdate-binding periplasmic protein	-1.1
1,3-Butandiol	PP_4565	Isocitrate dehydrogenase kinase/phosphatase	-1.2
1,3-Butandiol	PP_4779	AMP nucleosidase	variable
1,3-Butandiol	PP_4923	Outer membrane efflux protein	-1.1
1,3-Butandiol	PP_5161	putative lysophospholipase	-1.6
1,3-Hexanediol	PP_0248	Probable alpha-L-glutamate ligase	-1.8
1,3-Hexanediol	PP_0428	aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase	-1.8
1,3-Hexanediol	PP_0763	Medium-chain-fatty-acid CoA ligase	-5.3
1,3-Hexanediol	PP_0765	putative adhesin (DUF1302) (from data)	+1.2
1,3-Hexanediol	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	+1.2
1,3-Hexanediol	PP_0767	Transcriptional regulator, LuxR family	-4.9
1,3-Hexanediol	PP_1430	putative periplasmic serine endoprotease DegP-like	-1.5
1,3-Hexanediol	PP_2046	Transcriptional regulator, LysR family	+7.4
1,3-Hexanediol	PP_2047	3-hydroxyacyl-CoA dehydrogenase family protein	+7.1
1,3-Hexanediol	PP_2326	Universal stress protein	-1.8
1,3-Hexanediol	PP_2667	ABC transporter	-1.0
1,3-Hexanediol	PP_3731	Transcriptional regulator, TetR family	-1.3
1,3-Hexanediol	PP_3755	3-hydroxybutyryl-CoA dehydrogenase	-2.2
1,3-Hexanediol	PP_4006	Putative arginyl-tRNA--protein transferase	+1.7
1,3-Hexanediol	PP_4055	Glycogen debranching enzyme	-1.0
1,3-Hexanediol	PP_4059	fused trehalose synthase B/maltokinase	+2.5
1,3-Hexanediol	PP_4363	Sensor histidine kinase/response regulator	-1.7
1,3-Hexanediol	PP_4565	Isocitrate dehydrogenase kinase/phosphatase	-5.8
1,3-Hexanediol	PP_4923	Outer membrane efflux protein	-3.3
1,4-Butanediol	PP_0176	putative efflux transporter	+1.2
1,4-Butanediol	PP_0177	conserved protein of unknown function	+1.3
1,4-Butanediol	PP_0178	putative efflux pump	+1.0
1,4-Butanediol	PP_0179	putative efflux transporter	+1.3
1,4-Butanediol	PP_0410	DNA-binding response regulator UhpA	+1.0
1,4-Butanediol	PP_0742	conserved exported protein of unknown function	+2.0
1,4-Butanediol	PP_2047	3-hydroxyacyl-CoA dehydrogenase family protein	-4.1
1,4-Butanediol	PP_2049	Alcohol dehydrogenase, iron-containing	-7.3	Yes
1,4-Butanediol	PP_2082	phosphoenolpyruvate synthetase	-1.2
1,4-Butanediol	PP_2326	Universal stress protein	-3.7
1,4-Butanediol	PP_3074	D-beta-hydroxybutyrate permease	-1.4
1,4-Butanediol	PP_3075	putative transcriptional regulator	-2.1
1,4-Butanediol	PP_4010	DNA replication inhibitor	-1.6
1,4-Butanediol	PP_4050	glycogen synthase	+1.3
1,4-Butanediol	PP_4779	AMP nucleosidase	-2.3
1,5-Pentanediol	PP_1292	Cyclic pyranopterin monophosphate synthase accessory protein	-1.4
1,5-Pentanediol	PP_1400	Alpha-ketoglutarate permease	-2.6
1,5-Pentanediol	PP_1401	C4-dicarboxylate transport transcriptional regulatory protein	-2.9
1,5-Pentanediol	PP_1402	C4-dicarboxylate transport sensor protein	-2.1
1,5-Pentanediol	PP_1761	diguanylate cyclase with phosphodiesterase domain	+1.3
1,5-Pentanediol	PP_2123	molybdenum::molybdopterin ligase	-1.6
1,5-Pentanediol	PP_2326	Universal stress protein	-1.5
1,5-Pentanediol	PP_2671	Sensor histidine kinase	-1.9
1,5-Pentanediol	PP_2674	quinoprotein ethanol dehydrogenase	-1.9
1,5-Pentanediol	PP_2910	L-2-hydroxyglutarate oxidase	-5.5
1,5-Pentanediol	PP_3621	vanillin dehydrogenase, iorA-like component (from data)	-1.2
1,5-Pentanediol	PP_3622	vanillin dehydrogenase, iorB-like component (from data)	-1.4
1,5-Pentanediol	PP_3828	Molybdate-binding periplasmic protein	-1.2
1,5-Pentanediol	PP_4762	Acyl-CoA thioesterase II	-1.6
1-Pentanol	PP_0137	glutamate/aspartate-proton DAACS transporter	+1.3
1-Pentanol	PP_0266	Agmatine deiminase	-1.2
1-Pentanol	PP_0370	Acyl-CoA dehydrogenase family protein	-1.3
1-Pentanol	PP_0567	Biosynthetic arginine decarboxylase	variable
1-Pentanol	PP_0680	ATP-dependent protease-like protein	variable
1-Pentanol	PP_0763	Medium-chain-fatty-acid CoA ligase	-1.5
1-Pentanol	PP_0767	Transcriptional regulator, LuxR family	-1.1
1-Pentanol	PP_1067	Sensor histidine kinase	+1.3
1-Pentanol	PP_1291	PhoH family protein	variable
1-Pentanol	PP_1968	TetR family transcriptional regulator	+1.9
1-Pentanol	PP_2667	ABC transporter	-1.5
1-Pentanol	PP_2669	putative Outer membrane protein	-1.8
1-Pentanol	PP_2671	Sensor histidine kinase	-1.6
1-Pentanol	PP_2672	Transcriptional activator protein ExaE	-1.3
1-Pentanol	PP_2674	quinoprotein ethanol dehydrogenase	-2.3
1-Pentanol	PP_2676	putative Periplasmic binding protein	-1.1
1-Pentanol	PP_2679	quinoprotein ethanol dehydrogenase	-1.9
1-Pentanol	PP_2683	putative sensory box histidine kinase/response regulator	-2.4
1-Pentanol	PP_2932	Amidase family protein	variable
1-Pentanol	PP_3454	putative transcriptional regulatory protein	variable
1-Pentanol	PP_3455	Multidrug efflux RND membrane fusion protein	-2.7
1-Pentanol	PP_3456	Multidrug resistance protein MexB	-2.4
1-Pentanol	PP_3458	Butyrate--CoA ligase	-1.9
1-Pentanol	PP_3459	quinohemoprotein amine dehydrogenase, beta subunit	-1.6
1-Pentanol	PP_3461	quinohemoprotein amine dehydrogenase modification protein	-1.9
1-Pentanol	PP_3467	Sigma-54 dependent transcriptional regulator	-2.4
1-Pentanol	PP_3552	Sensory box histidine kinase	+1.1
1-Pentanol	PP_3761	Sensor histidine kinase/response regulator	variable
1-Pentanol	PP_3819	glutathione reductase (NADPH)	variable
1-Pentanol	PP_3839	short-chain alcohol dehydrogenase	-1.8
1-Pentanol	PP_4959	diguanylate cyclase	variable
1-Pentanol	PP_5161	putative lysophospholipase	-1.3
1-Pentanol	PP_5538	putative ABC transporter, substrate-binding protein	-1.9
1-Pentanol	PP_5602	quinohaemoprotein amine dehydrogenase, alpha subunit	-1.8
2,3-Butanediol	PP_0058	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	-2.0
2,3-Butanediol	PP_0370	Acyl-CoA dehydrogenase family protein	-1.4
2,3-Butanediol	PP_0545	aldehyde dehydrogenase	-1.5
2,3-Butanediol	PP_0553	Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system	-4.3
2,3-Butanediol	PP_0554	Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta	-2.9
2,3-Butanediol	PP_0555	Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	-3.8
2,3-Butanediol	PP_0557	Acetoin catabolism regulatory protein	-4.1
2,3-Butanediol	PP_0598	paraquat-inducible protein A	variable
2,3-Butanediol	PP_0599	paraquat-inducible protein B	variable
2,3-Butanediol	PP_0611	Type IV pili biogenesis protein PilE	-1.5
2,3-Butanediol	PP_0612	FAD-dependent glycine/D-amino acid oxidase	-2.7
2,3-Butanediol	PP_1427	RNA polymerase sigma E factor	-1.4
2,3-Butanediol	PP_1968	TetR family transcriptional regulator	-1.3
2,3-Butanediol	PP_2323	conserved protein of unknown function	-3.6
2,3-Butanediol	PP_3154	lipid A 3-O-deacylase	variable
2,3-Butanediol	PP_3453	putative Sensor protein RstB	variable
2,3-Butanediol	PP_3454	putative transcriptional regulatory protein	-2.6
2,3-Butanediol	PP_3456	Multidrug resistance protein MexB	variable
2,3-Butanediol	PP_3839	short-chain alcohol dehydrogenase	-1.1
2,3-Butanediol	PP_4487	acetyl-CoA synthetase	-3.7
2,3-Butanediol	PP_4549	long-chain-fatty-acid/CoA ligase	variable
2,3-Butanediol	PP_4550	long-chain-fatty-acid/CoA ligase	variable
2,3-Butanediol	PP_4570	conserved protein of unknown function	variable
2,3-Butanediol	PP_4619	Maleylacetoacetate isomerase	variable
2,3-Butanediol	PP_5745	paraquat-inducible protein A	variable
2-Deoxy-D-glucose	PP_0114	methionine ABC transporter ATP-binding protein	-1.4
2-Deoxy-D-glucose	PP_0506	putative ABC efflux transporter, permease protein	-1.3
2-Deoxy-D-glucose	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	-1.9
2-Deoxy-D-glucose	PP_1253	Transcriptional regulator, ArsR family	-1.3
2-Deoxy-D-glucose	PP_5320	two-component system DNA-binding transcriptional dual response regulator PhoB	-1.9
2-Deoxy-D-glucose	PP_5321	two-component system sensory histidine kinase	-1.5
2-Keto-D-gluconic acid hemicalcium salt hydrate	PP_3377	2-ketogluconate transporter, putative	-6.0
2-Methylbutanoic acid	PP_0260	ADP-sugar pyrophosphorylase	-1.3
2-Methylbutanoic acid	PP_2084	Putative regulator of ribonuclease activity	-1.8
2-Methylbutanoic acid	PP_2211	Transcriptional regulator, AraC family	-5.4
2-Methylbutanoic acid	PP_2213	putative acyl-CoA synthetase	-4.8
2-Methylbutanoic acid	PP_2216	short-chain acyl-CoA dehydrogenase	-6.1
2-Methylbutanoic acid	PP_3491	Enoly-coenzyme A hydratase/isomerase family protein	-1.5
2-Methylbutanoic acid	PP_3753	Transcriptional regulator, AraC family	-2.3
2-Methylbutanoic acid	PP_3754	Beta-ketothiolase BktB	-5.1
2-Methylbutanoic acid	PP_3755	3-hydroxybutyryl-CoA dehydrogenase	-2.6
2-Methylbutanoic acid	PP_3756	TetR family transcriptional regulator	-4.6
2-Methylbutanoic acid	PP_4762	Acyl-CoA thioesterase II	-3.0
2-Piperidinone	PP_0157	transcriptional activator of gcdH, LysR family	-2.1
2-Piperidinone	PP_0158	glutaryl-CoA dehydrogenase	-1.9
2-Piperidinone	PP_0159	putative CoA-transferase family III	-2.0
2-Piperidinone	PP_0213	succinate-semialdehyde dehydrogenase (NADP+)	-4.2
2-Piperidinone	PP_2080	NAD-specific glutamate dehydrogenase	variable
2-Piperidinone	PP_2909	glutarate hydroxylase (from data)	-3.4
2-Piperidinone	PP_2910	L-2-hydroxyglutarate oxidase	-4.1
2-Piperidinone	PP_3151	NAD+-dependent succinate semialdehyde dehydrogenase	variable
2-Piperidinone	PP_3514	5-oxoprolinase B	variable
2-Piperidinone	PP_3515	5-oxoprolinase A	variable
2-Piperidinone	PP_3516	Transcriptional regulator, AraC family	variable
2-Piperidinone	PP_3755	3-hydroxybutyryl-CoA dehydrogenase	-1.3
2-Piperidinone	PP_4398	Major facilitator family transporter	+2.5
2-Piperidinone	PP_4422	succinate-semialdehyde dehydrogenase (NADP+)	+1.3
2-Piperidinone	PP_5268	DNA-binding transcriptional repressor PuuR-putrescine	+1.9
2-methyl-1-butanol	PP_0988	glycine dehydrogenase	-1.5
2-methyl-1-butanol	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-1.3
2-methyl-1-butanol	PP_1291	PhoH family protein	-1.8
2-methyl-1-butanol	PP_2211	Transcriptional regulator, AraC family	-1.8
2-methyl-1-butanol	PP_2213	putative acyl-CoA synthetase	-3.4
2-methyl-1-butanol	PP_2216	short-chain acyl-CoA dehydrogenase	-2.2
2-methyl-1-butanol	PP_2664	putative hybrid sensor and regulator, histidine kinase	-1.4
2-methyl-1-butanol	PP_2667	ABC transporter	-1.6
2-methyl-1-butanol	PP_2669	putative Outer membrane protein	-1.4
2-methyl-1-butanol	PP_2671	Sensor histidine kinase	-2.1
2-methyl-1-butanol	PP_2672	Transcriptional activator protein ExaE	-2.6
2-methyl-1-butanol	PP_2674	quinoprotein ethanol dehydrogenase	-2.6
2-methyl-1-butanol	PP_2676	putative Periplasmic binding protein	-1.8
2-methyl-1-butanol	PP_2679	quinoprotein ethanol dehydrogenase	-1.6
2-methyl-1-butanol	PP_3491	Enoly-coenzyme A hydratase/isomerase family protein	-1.6
2-methyl-1-butanol	PP_5538	putative ABC transporter, substrate-binding protein	-1.9
3-Hydroxydecanoic acid	PP_0765	putative adhesin (DUF1302) (from data)	-2.1
3-Hydroxydecanoic acid	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-1.8
3-Hydroxydecanoic acid	PP_0767	Transcriptional regulator, LuxR family	-2.2
3-Hydroxydecanoic acid	PP_1761	diguanylate cyclase with phosphodiesterase domain	+1.9
3-Hydroxydecanoic acid	PP_1968	TetR family transcriptional regulator	-2.1
3-Hydroxydecanoic acid	PP_2019	adhesin-associated MmpL efflux pump (from data)	-1.3
3-Hydroxydecanoic acid	PP_4172	conserved exported protein of unknown function	+1.7
3-Hydroxydecanoic acid	PP_4173	Sensor histidine kinase/response regulator	+1.9
3-Hydroxydecanoic acid	PP_4549	long-chain-fatty-acid/CoA ligase	-2.5
3-Hydroxydecanoic acid	PP_5003	poly(3-hydroxyalkanoate) polymerase 1	+6.3
3-Hydroxydecanoic acid	PP_5005	Poly(3-hydroxyalkanoate) polymerase 2	+2.9
3-Hydroxydecanoic acid	PP_5006	Transcriptional regulator, TetR family	+2.9
3-Hydroxyhexanoic acid	PP_0763	Medium-chain-fatty-acid CoA ligase	-5.8
3-Hydroxyhexanoic acid	PP_0767	Transcriptional regulator, LuxR family	-4.9
3-Hydroxyhexanoic acid	PP_1615	Transcriptional regulator, LysR family	-4.1
3-Hydroxyhexanoic acid	PP_1616	formaldehyde dehydrogenase, glutathione-dependent	-5.1
3-Hydroxyhexanoic acid	PP_1617	S-formylglutathione hydrolase / S-lactoylglutathione hydrolase	-4.6
3-Hydroxyhexanoic acid	PP_2437	putative Acyl-CoA dehydrogenase	+2.0
3-Hydroxyhexanoic acid	PP_2671	Sensor histidine kinase	-1.6
3-Hydroxyhexanoic acid	PP_2672	Transcriptional activator protein ExaE	-2.3
3-Hydroxyhexanoic acid	PP_2674	quinoprotein ethanol dehydrogenase	-2.0
3-Hydroxyhexanoic acid	PP_3806	Hydrolase, isochorismatase family	-4.7
3-Hydroxyhexanoic acid	PP_4565	Isocitrate dehydrogenase kinase/phosphatase	-4.0
3-Hydroxypropionate	PP_0055	transcriptional regulator	-6.8
3-Hydroxypropionate	PP_0056	choline dehydrogenase	-6.4	Yes
3-Hydroxypropionate	PP_0248	Probable alpha-L-glutamate ligase	-2.3
3-Hydroxypropionate	PP_0595	Transcriptional regulator, LysR family	-5.2
3-Hydroxypropionate	PP_0596	Omega-amino acid--pyruvate aminotransferase	-4.0
3-Hydroxypropionate	PP_0597	methylmalonate-semialdehyde dehydrogenase	-5.0
3-Hydroxypropionate	PP_1984	Transcriptional regulator, LysR family	-3.3
3-Hydroxypropionate	PP_3491	Enoly-coenzyme A hydratase/isomerase family protein	-2.0
3-Hydroxypropionate	PP_4565	Isocitrate dehydrogenase kinase/phosphatase	-4.1	Yes
3-Hydroxypropionate	PP_4668	Transcriptional regulator, LysR family	-1.2
3-Methyl-2-Oxobutanoic Acid	PP_0642	conserved membrane protein of unknown function	-2.5
3-Methyl-2-Oxobutanoic Acid	PP_1127	Carboxylesterase	-1.1
3-Methyl-2-Oxobutanoic Acid	PP_3491	Enoly-coenzyme A hydratase/isomerase family protein	-4.8
3-Methyl-2-Oxobutanoic Acid	PP_3492	isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data)	-4.8
3-Methyl-2-Oxobutanoic Acid	PP_3753	Transcriptional regulator, AraC family	-1.5
3-Methyl-2-Oxobutanoic Acid	PP_3754	Beta-ketothiolase BktB	-2.6
3-Methyl-2-Oxobutanoic Acid	PP_3756	TetR family transcriptional regulator	-5.6
3-Methyl-2-Oxobutanoic Acid	PP_4064	isovaleryl-CoA dehydrogenase	-1.2
3-Methyl-2-Oxobutanoic Acid	PP_4065	methylcrotonyl-CoA carboxylase biotin-containing subunit beta	-2.2
3-Methyl-2-Oxobutanoic Acid	PP_4400	Bkd operon transcriptional regulator	-5.8
3-Methyl-2-Oxobutanoic Acid	PP_4401	branched-chain alpha-keto acid dehydrogenase complex, alpha subunit	-5.5
3-Methyl-2-Oxobutanoic Acid	PP_4402	branched-chain alpha-keto acid dehydrogenase complex, beta subunit	-5.0
3-Methyl-2-Oxobutanoic Acid	PP_4403	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	-6.0
3-Methyl-2-Oxobutanoic Acid	PP_4404	dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex	-4.1
3-Methyl-2-Oxobutanoic Acid	PP_4628	conserved protein of unknown function	-1.8
3-Methyl-2-Oxobutanoic Acid	PP_4666	3-hydroxyisobutyrate dehydrogenase	-8.0
3-Methyl-2-Oxobutanoic Acid	PP_4667	methylmalonate-semialdehyde dehydrogenase	-5.6
3-Methyl-2-Oxobutanoic Acid	PP_4668	Transcriptional regulator, LysR family	-5.0
3-Methyl-2-Oxobutanoic Acid	PP_5188	putative transcriptional regulator (AsnC/Lrp family)	-4.2
3-Methyl-2-Oxobutanoic Acid	PP_5452	protein of unknown function	-1.8
3-O-methyl-glucose	PP_0141	putative ABC transporter, ATP-binding protein	-1.5
3-O-methyl-glucose	PP_0506	putative ABC efflux transporter, permease protein	-1.4
3-O-methyl-glucose	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	-2.3
3-O-methyl-glucose	PP_3770	conserved protein of unknown function	+2.2
3-methyl-1-butanol	PP_0012	DNA replication and repair protein	-1.0
3-methyl-1-butanol	PP_0020	hypothetical protein	+1.0
3-methyl-1-butanol	PP_0058	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	variable
3-methyl-1-butanol	PP_0096	oligopeptidase A	variable
3-methyl-1-butanol	PP_0111	Electron transport protein SCO1/SenC	-2.0
3-methyl-1-butanol	PP_0145	Na+/Pi-cotransporter	variable
3-methyl-1-butanol	PP_0234	outer-membrane porin E	variable
3-methyl-1-butanol	PP_0248	Probable alpha-L-glutamate ligase	-1.9
3-methyl-1-butanol	PP_0266	Agmatine deiminase	variable
3-methyl-1-butanol	PP_0324	sarcosine oxidase subunit delta	-2.2
3-methyl-1-butanol	PP_0325	sarcosine oxidase subunit alpha	-2.4
3-methyl-1-butanol	PP_0354	CBS domain protein	+1.2
3-methyl-1-butanol	PP_0482	bacterioferritin	+1.2
3-methyl-1-butanol	PP_0567	Biosynthetic arginine decarboxylase	variable
3-methyl-1-butanol	PP_0680	ATP-dependent protease-like protein	-1.6
3-methyl-1-butanol	PP_0746	Uracil phosphoribosyltransferase	variable
3-methyl-1-butanol	PP_0795	fructose PTS permease - IIBC component	-1.6
3-methyl-1-butanol	PP_0878	dipeptide ABC transporter, binding subunit	variable
3-methyl-1-butanol	PP_0879	dipeptide ABC transporter - putative ATP binding subunit	variable
3-methyl-1-butanol	PP_0880	dipeptide ABC transporter - putative membrane subunit	variable
3-methyl-1-butanol	PP_0881	dipeptide ABC transporter - putative membrane subunit	variable
3-methyl-1-butanol	PP_0901	DNA-binding response regulator	variable
3-methyl-1-butanol	PP_0902	integral membrane sensor signal transduction histidine kinase	variable
3-methyl-1-butanol	PP_0909	conserved exported protein of unknown function	-1.6
3-methyl-1-butanol	PP_0927	aromatic amino acid transport protein	variable
3-methyl-1-butanol	PP_0988	glycine dehydrogenase	-1.3
3-methyl-1-butanol	PP_1007	putative Transmembrane sensor	variable
3-methyl-1-butanol	PP_1009	glyceraldehyde-3-phosphate dehydrogenase	variable
3-methyl-1-butanol	PP_1021	DNA-binding transcriptional regulator	+2.2
3-methyl-1-butanol	PP_1027	Exodeoxyribonuclease 7 large subunit	-1.9
3-methyl-1-butanol	PP_1034	multicopper oxidase	-2.3
3-methyl-1-butanol	PP_1056	putative Iron-chelator utilization protein	variable
3-methyl-1-butanol	PP_1078	putative ABC transporter, ATP-binding protein	variable
3-methyl-1-butanol	PP_1082	bacterioferritin	variable
3-methyl-1-butanol	PP_1084	putative peroxiredoxin	+1.4
3-methyl-1-butanol	PP_1092	DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites	variable
3-methyl-1-butanol	PP_1139	branched chain amino acid transporter - permease subunit	variable
3-methyl-1-butanol	PP_1185	Outer membrane protein H1	variable
3-methyl-1-butanol	PP_1206	basic-amino-acid specific porin OprD	variable
3-methyl-1-butanol	PP_1435	DNA repair protein RecO	-1.4
3-methyl-1-butanol	PP_1505	Phosphoenolpyruvate carboxylase	-3.7
3-methyl-1-butanol	PP_1515	Transcriptional regulator, tetR family	variable
3-methyl-1-butanol	PP_1616	formaldehyde dehydrogenase, glutathione-dependent	variable
3-methyl-1-butanol	PP_1617	S-formylglutathione hydrolase / S-lactoylglutathione hydrolase	-5.0
3-methyl-1-butanol	PP_1695	putative Sodium-solute symporter/sensory box histidine kinase/response regulator	variable
3-methyl-1-butanol	PP_1752	conserved protein of unknown function	variable
3-methyl-1-butanol	PP_1758	putative sulfurtransferase containing rhodanese-like domain	variable
3-methyl-1-butanol	PP_1789	Hydrolase, haloacid dehalogenase-like family	variable
3-methyl-1-butanol	PP_1792	Glycosyl transferase, group 2 family protein	+1.0
3-methyl-1-butanol	PP_1984	Transcriptional regulator, LysR family	variable
3-methyl-1-butanol	PP_2304	putative Peptidyl-prolyl cis-trans isomerase D	variable
3-methyl-1-butanol	PP_2439	peroxiredoxin, alkylhydroperoxide reductase - small subunit	-2.5
3-methyl-1-butanol	PP_2662	conserved exported protein of unknown function	variable
3-methyl-1-butanol	PP_2671	Sensor histidine kinase	variable
3-methyl-1-butanol	PP_2674	quinoprotein ethanol dehydrogenase	variable
3-methyl-1-butanol	PP_3065	Pyocin R2_PP, tail formation	-1.3
3-methyl-1-butanol	PP_3121	transcriptional regulator, LysR family	-3.8
3-methyl-1-butanol	PP_3122	acetoacetyl CoA-transferase (subunit A)	-4.0
3-methyl-1-butanol	PP_3123	acetoacetyl CoA-transferase (subunit B)	-4.7
3-methyl-1-butanol	PP_3455	Multidrug efflux RND membrane fusion protein	variable
3-methyl-1-butanol	PP_3456	Multidrug resistance protein MexB	variable
3-methyl-1-butanol	PP_3587	lipid hydroperoxide peroxidase	variable
3-methyl-1-butanol	PP_3668	Catalase-peroxidase	variable
3-methyl-1-butanol	PP_3819	glutathione reductase (NADPH)	variable
3-methyl-1-butanol	PP_4063	putative Long-chain-fatty-acid-CoA ligase	-3.6
3-methyl-1-butanol	PP_4064	isovaleryl-CoA dehydrogenase	-5.1
3-methyl-1-butanol	PP_4065	methylcrotonyl-CoA carboxylase biotin-containing subunit beta	-6.3
3-methyl-1-butanol	PP_4266	Adenine phosphoribosyltransferase	-5.5
3-methyl-1-butanol	PP_4403	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	-1.4
3-methyl-1-butanol	PP_4487	acetyl-CoA synthetase	-2.6
3-methyl-1-butanol	PP_4489	sigma-54 dependent transcriptional regulator	variable
3-methyl-1-butanol	PP_4490	phenylalanine-4-hydroxylase	variable
3-methyl-1-butanol	PP_4495	aromatic amino acid transport protein	variable
3-methyl-1-butanol	PP_4549	long-chain-fatty-acid/CoA ligase	variable
3-methyl-1-butanol	PP_4565	Isocitrate dehydrogenase kinase/phosphatase	variable
3-methyl-1-butanol	PP_4571	cysteine synthase A	-1.5
3-methyl-1-butanol	PP_4575	Urea amidolyase-related protein	variable
3-methyl-1-butanol	PP_4576	allophanate hydrolase subunit	variable
3-methyl-1-butanol	PP_4577	UPF0271 protein PP_4577	variable
3-methyl-1-butanol	PP_4578	Major facilitator family transporter	+1.5
3-methyl-1-butanol	PP_4579	Transcriptional regulator, LysR family	variable
3-methyl-1-butanol	PP_4611	RNA polymerase sigma-70 factor, ECF subfamily	-1.6
3-methyl-1-butanol	PP_4613	outer membrane ferric citrate porin	-1.4
3-methyl-1-butanol	PP_4619	Maleylacetoacetate isomerase	-1.4
3-methyl-1-butanol	PP_4628	conserved protein of unknown function	variable
3-methyl-1-butanol	PP_4632	dihydrofolate reductase / dihydromonapterin reductase	-2.0
3-methyl-1-butanol	PP_4690	Rieske 2Fe-2S family protein	variable
3-methyl-1-butanol	PP_4737	D-lactate dehydrogenase	variable
3-methyl-1-butanol	PP_4774	divalent cation efflux transporter	variable
3-methyl-1-butanol	PP_4779	AMP nucleosidase	variable
3-methyl-1-butanol	PP_4811	Gamma-glutamyl phosphate reductase	variable
3-methyl-1-butanol	PP_4831	putative cobalt-precorrin-6A synthase	variable
3-methyl-1-butanol	PP_4881	putative Iron ABC transporter, periplasmic iron-binding protein	variable
3-methyl-1-butanol	PP_4882	Iron ABC transporter, permease protein	variable
3-methyl-1-butanol	PP_4896	DNA mismatch repair protein MutL	-1.6
3-methyl-1-butanol	PP_4900	epoxyqueuosine reductase	-1.8
3-methyl-1-butanol	PP_4923	Outer membrane efflux protein	-2.2
3-methyl-1-butanol	PP_4975	Long-chain acyl-CoA thioester hydrolase family protein	-1.2
3-methyl-1-butanol	PP_5024	Amino acid ABC transporter, periplasmic amino acid-binding protein	variable
3-methyl-1-butanol	PP_5139	cadmium translocating P-type ATPase	variable
3-methyl-1-butanol	PP_5161	putative lysophospholipase	variable
3-methyl-1-butanol	PP_5184	glutamylpolyamine synthetase	variable
3-methyl-1-butanol	PP_5196	putative iron(III)|iron ABC transporter, periplasmic iron-binding protein	variable
3-methyl-1-butanol	PP_5212	Oxidoreductase, iron-sulfur-binding	variable
3-methyl-1-butanol	PP_5283	periplasmic dipeptide transport protein	variable
3-methyl-1-butanol	PP_5314	Rubredoxin-NAD(+) reductase	+3.9
3-methyl-1-butanol	PP_5426	conserved protein of unknown function	variable
3-methyl-1-butanol	PP_5538	putative ABC transporter, substrate-binding protein	-1.6
3-methyl-2-oxopentanoic acid	PP_2213	putative acyl-CoA synthetase	-1.3
3-methyl-2-oxopentanoic acid	PP_2216	short-chain acyl-CoA dehydrogenase	-2.0
3-methyl-2-oxopentanoic acid	PP_4400	Bkd operon transcriptional regulator	-2.4
3-methyl-2-oxopentanoic acid	PP_4401	branched-chain alpha-keto acid dehydrogenase complex, alpha subunit	-2.5
3-methyl-2-oxopentanoic acid	PP_4402	branched-chain alpha-keto acid dehydrogenase complex, beta subunit	-2.0
3-methyl-2-oxopentanoic acid	PP_4403	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	-2.1
3-methyl-2-oxopentanoic acid	PP_4404	dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex	-1.2
3-methyl-2-oxopentanoic acid	PP_4640	conserved protein of unknown function	+4.4
3-methyl-2-oxopentanoic acid	PP_4641	putative transporter	+4.6
3-methyl-2-oxopentanoic acid	PP_5365	putative fatty acid methyltransferase	+1.4
3-methyl-3-butenol	PP_1430	putative periplasmic serine endoprotease DegP-like	-2.5
3-methyl-3-butenol	PP_1616	formaldehyde dehydrogenase, glutathione-dependent	-1.9
3-methyl-3-butenol	PP_2084	Putative regulator of ribonuclease activity	variable
3-methyl-3-butenol	PP_2667	ABC transporter	-3.2
3-methyl-3-butenol	PP_2669	putative Outer membrane protein	-2.7
3-methyl-3-butenol	PP_2676	putative Periplasmic binding protein	-1.8
3-methyl-3-butenol	PP_2679	quinoprotein ethanol dehydrogenase	-2.7
3-methyl-3-butenol	PP_2680	aldehyde dehydrogenase	+1.2
3-methyl-3-butenol	PP_3121	transcriptional regulator, LysR family	-2.7
3-methyl-3-butenol	PP_3122	acetoacetyl CoA-transferase (subunit A)	-2.9
3-methyl-3-butenol	PP_3123	acetoacetyl CoA-transferase (subunit B)	-2.9
3-methyl-3-butenol	PP_3458	Butyrate--CoA ligase	-1.4
3-methyl-3-butenol	PP_3459	quinohemoprotein amine dehydrogenase, beta subunit	-1.2
3-methyl-3-butenol	PP_3467	Sigma-54 dependent transcriptional regulator	variable
3-methyl-3-butenol	PP_3583	multidrug efflux transport system - membrane subunit	-1.0
3-methyl-3-butenol	PP_4063	putative Long-chain-fatty-acid-CoA ligase	-1.9
3-methyl-3-butenol	PP_4064	isovaleryl-CoA dehydrogenase	-4.2
3-methyl-3-butenol	PP_4065	methylcrotonyl-CoA carboxylase biotin-containing subunit beta	-6.3
3-methyl-3-butenol	PP_4565	Isocitrate dehydrogenase kinase/phosphatase	-1.2
3-methyl-3-butenol	PP_5538	putative ABC transporter, substrate-binding protein	-3.0
4-Aminobutyric acid	PP_0411	Polyamine ABC transporter, ATP-binding protein	-4.5
4-Aminobutyric acid	PP_0412	Polyamine ABC transporter, periplasmic polyamine-binding protein	-3.1	Yes
4-Aminobutyric acid	PP_0413	Polyamine ABC transporter, permease protein	-2.9
4-Aminobutyric acid	PP_1058	conserved protein of unknown function	+1.5
4-Aminobutyric acid	PP_2543	gamma-aminobutyrate permease	-1.5
4-Aminobutyric acid	PP_2908	DNA-binding transcriptional repressor	+1.9
4-Aminobutyric acid	PP_4947	proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase	+1.2
4-Hydroxybenzoic Acid	PP_0612	FAD-dependent glycine/D-amino acid oxidase	-1.4
4-Hydroxybenzoic Acid	PP_1375	transcription regulatory protein (pca regulon)	-5.8	Yes
4-Hydroxybenzoic Acid	PP_1377	beta-ketoadipyl-CoA thiolase	-6.5	Yes
4-Hydroxybenzoic Acid	PP_1379	3-carboxy-cis,cis-muconate cycloisomerase	-6.8	Yes
4-Hydroxybenzoic Acid	PP_1380	3-oxoadipate enol-lactonase 2	-6.2	Yes
4-Hydroxybenzoic Acid	PP_3537	p-hydroxybenzoate hydroxylase	-3.6	Yes
4-Hydroxybenzoic Acid	PP_3538	transcriptional regulator	-3.8	Yes
4-Hydroxybenzoic Acid	PP_3952	3-oxoadipate CoA-transferase subunit A	-6.8	Yes
4-Hydroxybenzoic Acid	PP_4655	protocatechuate 3,4-dioxygenase alpha chain	-5.2	Yes
4-Hydroxybenzoic Acid	PP_4656	protocatechuate 3,4-dioxygenase beta chain	-4.6	Yes
4-Hydroxyvalerate	PP_0353	Exonuclease	+1.5
4-Hydroxyvalerate	PP_0413	Polyamine ABC transporter, permease protein	-1.9
4-Hydroxyvalerate	PP_0414	Polyamine ABC transporter, permease protein	-2.1
4-Hydroxyvalerate	PP_0742	conserved exported protein of unknown function	+2.0
4-Hydroxyvalerate	PP_1236	putative Glycine cleavage system transcriptional repressor	+2.6
4-Hydroxyvalerate	PP_1351	putative 2-dehydropantoate 2-reductase	-2.0
4-Hydroxyvalerate	PP_1695	putative Sodium-solute symporter/sensory box histidine kinase/response regulator	-1.4
4-Hydroxyvalerate	PP_1761	diguanylate cyclase with phosphodiesterase domain	+1.7
4-Hydroxyvalerate	PP_1968	TetR family transcriptional regulator	-2.3
4-Hydroxyvalerate	PP_2082	phosphoenolpyruvate synthetase	-3.4
4-Hydroxyvalerate	PP_2326	Universal stress protein	-2.8
4-Hydroxyvalerate	PP_2436	Transcriptional regulator, LysR family	-2.2
4-Hydroxyvalerate	PP_2437	putative Acyl-CoA dehydrogenase	+1.4
4-Hydroxyvalerate	PP_2457	DNA-binding transcriptional repressor	+1.1
4-Hydroxyvalerate	PP_2790	Sigma-54 dependent sensory box protein	-5.6
4-Hydroxyvalerate	PP_2791	4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data)	-4.8
4-Hydroxyvalerate	PP_2797	acetate permease	+1.8
4-Hydroxyvalerate	PP_3555	putative Transmembrane sensor	-1.6
4-Hydroxyvalerate	PP_3731	Transcriptional regulator, TetR family	-1.4
4-Hydroxyvalerate	PP_3753	Transcriptional regulator, AraC family	-2.8
4-Hydroxyvalerate	PP_3754	Beta-ketothiolase BktB	-3.8
4-Hydroxyvalerate	PP_3755	3-hydroxybutyryl-CoA dehydrogenase	-3.4
4-Hydroxyvalerate	PP_3923	Phosphoglycerate mutase	-1.7
4-Hydroxyvalerate	PP_3925	conserved protein of unknown function	-1.0
4-Hydroxyvalerate	PP_4571	cysteine synthase A	-3.6
4-Hydroxyvalerate	PP_4629	Sensory box protein	+2.0
4-Hydroxyvalerate	PP_4762	Acyl-CoA thioesterase II	-5.1
4-Hydroxyvalerate	PP_4907	Thiosulfate sulfurtransferase	+1.6
4-Hydroxyvalerate	PP_5041	glycogen phosphorylase	-1.2
4-Hydroxyvalerate	PP_5210	Alcohol dehydrogenase, zinc-containing	-2.6
4-Methyl-2-oxovaleric acid	PP_0248	Probable alpha-L-glutamate ligase	-1.2
4-Methyl-2-oxovaleric acid	PP_1112	conserved membrane protein of unknown function	-1.5
4-Methyl-2-oxovaleric acid	PP_1137	high-affinity branched-chain amino acid transporter, ATP binding	-1.2
4-Methyl-2-oxovaleric acid	PP_1139	branched chain amino acid transporter - permease subunit	-1.2
4-Methyl-2-oxovaleric acid	PP_1141	branched-chain amino acids ABC transporter - periplasmic leucine binding subunit	-1.1
4-Methyl-2-oxovaleric acid	PP_3122	acetoacetyl CoA-transferase (subunit A)	-2.4
4-Methyl-2-oxovaleric acid	PP_3123	acetoacetyl CoA-transferase (subunit B)	-2.0
4-Methyl-2-oxovaleric acid	PP_4064	isovaleryl-CoA dehydrogenase	-5.3	Yes
4-Methyl-2-oxovaleric acid	PP_4065	methylcrotonyl-CoA carboxylase biotin-containing subunit beta	-5.2	Yes
4-Methyl-2-oxovaleric acid	PP_4179	Chaperone protein HtpG	-1.3
4-Methyl-2-oxovaleric acid	PP_4400	Bkd operon transcriptional regulator	-7.8
4-Methyl-2-oxovaleric acid	PP_4401	branched-chain alpha-keto acid dehydrogenase complex, alpha subunit	-6.5
4-Methyl-2-oxovaleric acid	PP_4402	branched-chain alpha-keto acid dehydrogenase complex, beta subunit	-5.7
4-Methyl-2-oxovaleric acid	PP_4403	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	-6.6
4-Methyl-2-oxovaleric acid	PP_4404	dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex	-2.1
4-Methyl-2-oxovaleric acid	PP_4640	conserved protein of unknown function	-1.2
4-Methyl-2-oxovaleric acid	PP_4641	putative transporter	-1.2
4-vinylphenol	PP_0506	putative ABC efflux transporter, permease protein	-1.3
4-vinylphenol	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	-1.9
4-vinylphenol	PP_1112	conserved membrane protein of unknown function	+1.5
4-vinylphenol	PP_2513	4-oxalomesaconate tautomerase	-2.2
5-Aminovaleric acid	PP_0157	transcriptional activator of gcdH, LysR family	-1.6	Yes
5-Aminovaleric acid	PP_0158	glutaryl-CoA dehydrogenase	-1.9	Yes
5-Aminovaleric acid	PP_0159	putative CoA-transferase family III	-1.4	Yes
5-Aminovaleric acid	PP_0213	succinate-semialdehyde dehydrogenase (NADP+)	-4.0
5-Aminovaleric acid	PP_2909	glutarate hydroxylase (from data)	-2.2
5-Aminovaleric acid	PP_2910	L-2-hydroxyglutarate oxidase	-4.3
5-Aminovaleric acid	PP_2911	gamma-aminobutyrate permease	-1.1
5-Aminovaleric acid	PP_4398	Major facilitator family transporter	+2.0
5-Aminovaleric acid	PP_5268	DNA-binding transcriptional repressor PuuR-putrescine	+1.1
5-Hydroxydodecanoate	PP_0765	putative adhesin (DUF1302) (from data)	-2.3
5-Hydroxydodecanoate	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-2.0
5-Hydroxydodecanoate	PP_0767	Transcriptional regulator, LuxR family	-1.6
5-Hydroxydodecanoate	PP_1112	conserved membrane protein of unknown function	+1.5
5-Hydroxydodecanoate	PP_1351	putative 2-dehydropantoate 2-reductase	-1.8
5-Hydroxydodecanoate	PP_1761	diguanylate cyclase with phosphodiesterase domain	+1.4
5-Hydroxydodecanoate	PP_2436	Transcriptional regulator, LysR family	-1.7
5-Hydroxydodecanoate	PP_2437	putative Acyl-CoA dehydrogenase	+1.6
5-Hydroxydodecanoate	PP_3925	conserved protein of unknown function	-1.3
5-Hydroxydodecanoate	PP_4549	long-chain-fatty-acid/CoA ligase	-4.0
5-Hydroxydodecanoate	PP_4817	MaoC domain protein	-5.6
5-Hydroxydodecanoate	PP_5003	poly(3-hydroxyalkanoate) polymerase 1	+5.3
5-Hydroxydodecanoate	PP_5005	Poly(3-hydroxyalkanoate) polymerase 2	+2.3
5-Hydroxydodecanoate	PP_5006	Transcriptional regulator, TetR family	+3.6
BC Lignin Sorghum	PP_1689	putative Long-chain fatty acid transporter	-1.4
Beta-alanine	PP_0248	Probable alpha-L-glutamate ligase	-1.4
Beta-alanine	PP_0409	Sensory box histidine kinase	-1.7
Beta-alanine	PP_0410	DNA-binding response regulator UhpA	-3.8
Beta-alanine	PP_0411	Polyamine ABC transporter, ATP-binding protein	-5.3
Beta-alanine	PP_0412	Polyamine ABC transporter, periplasmic polyamine-binding protein	-5.7
Beta-alanine	PP_0413	Polyamine ABC transporter, permease protein	-5.2
Beta-alanine	PP_0414	Polyamine ABC transporter, permease protein	-4.9
Beta-alanine	PP_0595	Transcriptional regulator, LysR family	-7.8
Beta-alanine	PP_0596	Omega-amino acid--pyruvate aminotransferase	-6.4	Yes
Beta-alanine	PP_0597	methylmalonate-semialdehyde dehydrogenase	-7.7	Yes
Beta-alanine	PP_0988	glycine dehydrogenase	-1.5
Beta-alanine	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-1.4
Beta-alanine	PP_1984	Transcriptional regulator, LysR family	-1.6
Beta-alanine	PP_4565	Isocitrate dehydrogenase kinase/phosphatase	-1.0
Beta-alanine	PP_4863	high-affinity branched-chain amino acid transporter, ATP-binding	-1.4
Beta-alanine	PP_4864	High-affinity branched-chain amino acid transport ATP-binding protein BraF	-1.3
Beta-alanine	PP_4865	High-affinity branched-chain amino acid transport system permease protein BraE	-1.3
Beta-alanine	PP_4866	High-affinity branched-chain amino acid transport system permease protein BraD	-1.2	Yes
Beta-alanine	PP_4947	proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase	+2.0
Beta-alanine	PP_5270	D-amino-acid:quinone oxidoreductase (deaminating)	-6.1	Yes
Beta-alanine	PP_5271	DNA-binding transcriptional dual regulator, leucine-binding	-6.5	Yes
Bisabolene	PP_0506	putative ABC efflux transporter, permease protein	-1.8
Bisabolene	PP_0507	putative ABC efflux transporter, ATP-binding protein	-2.4
Bisabolene	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	-2.8
Bisabolene	PP_3443	putative glyceraldehyde-3-phosphate dehydrogenase	-2.1
Bisabolene	PP_3786	aminotransferase	-1.1
Butanol	PP_3552	Sensory box histidine kinase	-1.6
Butanol	PP_3553	AMP-binding domain protein	-2.9
Butanol	PP_3554	Acyl-CoA dehydrogenase family protein	-2.6
Butanol	PP_3753	Transcriptional regulator, AraC family	-2.0
Butanol	PP_3754	Beta-ketothiolase BktB	-2.2
Butanol	PP_3755	3-hydroxybutyryl-CoA dehydrogenase	-2.4
Butanol	PP_3756	TetR family transcriptional regulator	-1.8
Butanol	PP_4565	Isocitrate dehydrogenase kinase/phosphatase	-4.0
Butanol	PP_4923	Outer membrane efflux protein	-1.3
Butyl stearate	PP_0765	putative adhesin (DUF1302) (from data)	-3.0
Butyl stearate	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-3.4
Butyl stearate	PP_0767	Transcriptional regulator, LuxR family	-2.4
Butyl stearate	PP_1058	conserved protein of unknown function	+2.3
Butyl stearate	PP_2018	adhesin-associated BNR repeat protein (from data)	-3.5
Butyl stearate	PP_2019	adhesin-associated MmpL efflux pump (from data)	-3.3
Butyl stearate	PP_4549	long-chain-fatty-acid/CoA ligase	-1.7
Butyl stearate	PP_4565	Isocitrate dehydrogenase kinase/phosphatase	-1.5
Cholinium lysinate	PP_0308	putative dipeptidase	-3.2
Cholinium lysinate	PP_0309	conserved protein of unknown function	-3.1
Cholinium lysinate	PP_0310	putative dimethylglycine dehydrogenase subunit	-3.2
Cholinium lysinate	PP_0311	putative dimethylglycine dehydrogenase subunit	-3.2
Cholinium lysinate	PP_0312	electron transfer flavoprotein, alpha subunit	-3.5
Cholinium lysinate	PP_0316	putative glycine-betaine dioxygenase subunit	-1.2
Cholinium lysinate	PP_0322	serine hydroxymethyltransferase	-3.1
Cholinium lysinate	PP_0323	sarcosine oxidase subunit beta	-3.6
Cholinium lysinate	PP_0324	sarcosine oxidase subunit delta	-4.0
Cholinium lysinate	PP_0325	sarcosine oxidase subunit alpha	-3.9
Cholinium lysinate	PP_0326	sarcosine oxidase subunit gamma	-3.7
Cholinium lysinate	PP_1616	formaldehyde dehydrogenase, glutathione-dependent	-1.9
Cholinium lysinate	PP_5063	betaine aldehyde dehydrogenase, NAD-dependent	-1.7
Cholinium lysinate	PP_5064	choline dehydrogenase	-1.5
Cholinium lysinate	PP_5257	L-pipecolate oxidase	-1.0
Cholinium lysinate	PP_5258	L-piperidine-6-carboxylate dehydrogenase	-1.2
Crotonic acid	PP_0612	FAD-dependent glycine/D-amino acid oxidase	-1.7
Crotonic acid	PP_1375	transcription regulatory protein (pca regulon)	-1.8
Crotonic acid	PP_1380	3-oxoadipate enol-lactonase 2	-3.3
Crotonic acid	PP_3952	3-oxoadipate CoA-transferase subunit A	-1.7
Crotonic acid	PP_4488	conserved exported protein of unknown function	+1.6
Crotonic acid	PP_4655	protocatechuate 3,4-dioxygenase alpha chain	-2.2
D-Fructose	PP_0793	Phosphotransferase system, fructose-specific EI/HPr/EIIA components	-5.8	Yes
D-Fructose	PP_0795	fructose PTS permease - IIBC component	-6.0	Yes
D-Fructose	PP_1013	Sensor histidine kinase	-2.0
D-Fructose	PP_1578	conserved protein of unknown function	variable
D-Fructose	PP_3768	putative shikimate 5-dehydrogenase	-2.1
D-Fructose	PP_4779	AMP nucleosidase	variable
D-Fructose	PP_5332	conserved protein of unknown function	-1.3
D-Galacturonic Acid monohydrate	PP_1165	conserved protein of unknown function	-4.7	Yes
D-Galacturonic Acid monohydrate	PP_1167	D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data)	-6.3	Yes
D-Galacturonic Acid monohydrate	PP_1168	D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data)	-5.4	Yes
D-Galacturonic Acid monohydrate	PP_1169	D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data)	-6.3	Yes
D-Galacturonic Acid monohydrate	PP_1170	D-glucaro-1,5-lactonase UxuL (from data)	-6.1	Yes
D-Galacturonic Acid monohydrate	PP_1171	Uronate dehydrogenase (EC 1.1.1.203) (from data)	-6.1	Yes
D-Galacturonic Acid monohydrate	PP_3599	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data)	-6.2	Yes
D-Galacturonic Acid monohydrate	PP_3600	glucarate transporter	-3.7	Yes
D-Galacturonic Acid monohydrate	PP_3601	galactarate dehydratase	-6.2	Yes
D-Glucaric acid	PP_3599	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data)	-5.3
D-Glucaric acid	PP_4757	D-glucarate dehydratase / L-idarate epimerase	-5.1
D-Glucaric acid	PP_4758	Major facilitator family transporter	-5.5
D-Glucaric acid	PP_4759	transcriptional regulator, GntR family	-4.8
D-Glucose	PP_0118	zinc import ATP-binding protein	variable
D-Glucose	PP_0143	conserved membrane protein of unknown function	variable
D-Glucose	PP_0758	conserved protein of unknown function	variable
D-Glucose	PP_1013	Sensor histidine kinase	variable
D-Glucose	PP_1015	mannose/glucose ABC transporter, glucose-binding periplasmic protein	variable	Yes
D-Glucose	PP_1016	mannose/glucose ABC transporter, permease protein	variable	Yes
D-Glucose	PP_1017	mannose/glucose ABC transporter, permease protein	variable	Yes
D-Glucose	PP_1018	mannose/glucose ABC transporter - ATP binding subunit	variable	Yes
D-Glucose	PP_1058	conserved protein of unknown function	variable
D-Glucose	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	variable
D-Glucose	PP_1201	conserved exported protein of unknown function	variable
D-Glucose	PP_1202	putative enzyme involved in modification of phospholipids	variable
D-Glucose	PP_1206	basic-amino-acid specific porin OprD	variable
D-Glucose	PP_1292	Cyclic pyranopterin monophosphate synthase accessory protein	variable
D-Glucose	PP_1294	molybdopterin synthase large subunit	variable
D-Glucose	PP_1377	beta-ketoadipyl-CoA thiolase	variable
D-Glucose	PP_1418	putative Tricarboxylate transport protein TctC	variable
D-Glucose	PP_1420	Transcriptional regulatory protein tctD	variable	Yes
D-Glucose	PP_1421	putative Sensor histidine kinase TctE	variable
D-Glucose	PP_1445	carbohydrate-selective porin	variable
D-Glucose	PP_1563	putative Phage terminase, large subunit	variable
D-Glucose	PP_1564	conserved exported protein of unknown function	variable
D-Glucose	PP_1565	Phage portal protein, HK97 family	variable
D-Glucose	PP_1567	Capsid protein	variable
D-Glucose	PP_1703	assimilatory nitrate reductase/sulfite reductase	variable
D-Glucose	PP_1705	nitrite reductase [NAD(P)H] large subunit	variable
D-Glucose	PP_1706	Nitrite reductase	variable
D-Glucose	PP_2092	Nitrate transporter	variable
D-Glucose	PP_2093	NasT	variable
D-Glucose	PP_2094	putative Nitrate-binding protein NasS	variable
D-Glucose	PP_2123	molybdenum::molybdopterin ligase	variable
D-Glucose	PP_2318	acyl-CoA thioesterase I/protease I/lysophospholipase L1	variable
D-Glucose	PP_2323	conserved protein of unknown function	variable
D-Glucose	PP_2386	conserved protein of unknown function	variable
D-Glucose	PP_2907	DNA-binding response regulator	variable
D-Glucose	PP_3132	putative Polysaccharide transporter	variable
D-Glucose	PP_3443	putative glyceraldehyde-3-phosphate dehydrogenase	variable
D-Glucose	PP_3828	Molybdate-binding periplasmic protein	variable
D-Glucose	PP_3829	Molybdenum transport system permease protein ModB	variable
D-Glucose	PP_3830	Molybdenum import ATP-binding protein ModC	variable
D-Glucose	PP_4597	Cyclic pyranopterin monophosphate synthase	variable
D-Glucose	PP_4611	RNA polymerase sigma-70 factor, ECF subfamily	variable
D-Glucose	PP_4613	outer membrane ferric citrate porin	variable
D-Glucose	PP_4779	AMP nucleosidase	variable	Yes
D-Glucose	PP_4798	putative Membrane-bound lytic murein transglycosylase	variable
D-Glucose	PP_4860	putative Mannose-6-phosphate isomerase	variable
D-Glucose	PP_4954	conserved membrane protein of unknown function	variable
D-Glucose	PP_5025	Glucans biosynthesis glucosyltransferase H	variable
D-Glucose	PP_5320	two-component system DNA-binding transcriptional dual response regulator PhoB	variable
D-Glucose	PP_5321	two-component system sensory histidine kinase	variable
D-Glucose	PP_5385	metal RND efflux outer membrane protein, CzcC family	variable
D-Glucuronic Acid	PP_1167	D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data)	-2.6	Yes
D-Glucuronic Acid	PP_1168	D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data)	-2.8	Yes
D-Glucuronic Acid	PP_1169	D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data)	-2.6	Yes
D-Glucuronic Acid	PP_1170	D-glucaro-1,5-lactonase UxuL (from data)	-2.5	Yes
D-Glucuronic Acid	PP_1171	Uronate dehydrogenase (EC 1.1.1.203) (from data)	-2.7	Yes
D-Glucuronic Acid	PP_2910	L-2-hydroxyglutarate oxidase	-1.5	Yes
D-Glucuronic Acid	PP_3599	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data)	-3.5	Yes
D-Glucuronic Acid	PP_4757	D-glucarate dehydratase / L-idarate epimerase	-3.1	Yes
D-Glucuronic Acid	PP_4758	Major facilitator family transporter	-2.6	Yes
D-Glucuronic Acid	PP_4759	transcriptional regulator, GntR family	-2.3
D-Glucuronic acid gamma lactone	PP_1165	conserved protein of unknown function	-1.2
D-Glucuronic acid gamma lactone	PP_1167	D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data)	-5.5
D-Glucuronic acid gamma lactone	PP_1168	D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data)	-4.8
D-Glucuronic acid gamma lactone	PP_1169	D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data)	-6.0
D-Glucuronic acid gamma lactone	PP_1170	D-glucaro-1,5-lactonase UxuL (from data)	-4.9
D-Glucuronic acid gamma lactone	PP_1171	Uronate dehydrogenase (EC 1.1.1.203) (from data)	-6.0
D-Glucuronic acid gamma lactone	PP_2669	putative Outer membrane protein	-1.1
D-Glucuronic acid gamma lactone	PP_3599	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data)	-5.8
D-Glucuronic acid gamma lactone	PP_4757	D-glucarate dehydratase / L-idarate epimerase	-6.2
D-Glucuronic acid gamma lactone	PP_4758	Major facilitator family transporter	-6.1
D-Glucuronic acid gamma lactone	PP_4759	transcriptional regulator, GntR family	-5.9
D-Lysine	PP_0155	pyridine nucleotide transhydrogenase, beta subunit	-1.4
D-Lysine	PP_0382	5-aminopentanamidase	-1.3
D-Lysine	PP_0383	Lysine 2-monooxygenase	-1.5
D-Lysine	PP_1058	conserved protein of unknown function	+1.9
D-Lysine	PP_1968	TetR family transcriptional regulator	+1.5
D-Lysine	PP_3592	Transcriptional regulator, RpiR family	-5.2
D-Lysine	PP_3593	L-lysine and D-lysine ABC transporter, substrate-binding component (from data)	-5.1
D-Lysine	PP_3594	L-lysine and D-lysine ABC transporter, permease component 1 (from data)	-5.5
D-Lysine	PP_3595	L-lysine and D-lysine ABC transporter, permease component 2 (from data)	-5.0
D-Lysine	PP_3596	D-lysine oxidase	-3.9
D-Lysine	PP_3597	L-lysine and D-lysine ABC transporter, ATPase component (from data)	-4.3
D-Lysine	PP_4108	2-aminoadipate transaminase (EC 2.6.1.39) (from data)	-5.9
D-Lysine	PP_4295	TetR family transcriptional regulator	+1.4
D-Lysine	PP_4493	D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data)	-5.4
D-Lysine	PP_4666	3-hydroxyisobutyrate dehydrogenase	-1.2
D-Lysine	PP_4860	putative Mannose-6-phosphate isomerase	-1.3
D-Lysine	PP_5257	L-pipecolate oxidase	-4.7
D-Lysine	PP_5258	L-piperidine-6-carboxylate dehydrogenase	-4.5
D-Lysine	PP_5260	2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data)	-3.6
D-Mannose	PP_0793	Phosphotransferase system, fructose-specific EI/HPr/EIIA components	-5.1	Yes
D-Mannose	PP_0795	fructose PTS permease - IIBC component	-5.5	Yes
D-Mannose	PP_1013	Sensor histidine kinase	+1.5	Yes
D-Mannose	PP_1014	aldose-ketose isomerase	-1.3	Yes
D-Mannose	PP_1015	mannose/glucose ABC transporter, glucose-binding periplasmic protein	+2.0	Yes
D-Mannose	PP_1016	mannose/glucose ABC transporter, permease protein	+2.1	Yes
D-Mannose	PP_1017	mannose/glucose ABC transporter, permease protein	+2.0	Yes
D-Mannose	PP_1018	mannose/glucose ABC transporter - ATP binding subunit	+2.1	Yes
D-Mannose	PP_1291	PhoH family protein	-1.3
D-Mannose	PP_3368	Major facilitator family transporter	-1.1
D-Mannose	PP_3443	putative glyceraldehyde-3-phosphate dehydrogenase	-1.7	Yes
D-Mannose	PP_4779	AMP nucleosidase	-2.9
D-Mannose	PP_5332	conserved protein of unknown function	-1.8	Yes
D-Xylose	PP_0506	putative ABC efflux transporter, permease protein	-1.0
D-Xylose	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	-2.8
D-Xylose	PP_3443	putative glyceraldehyde-3-phosphate dehydrogenase	-1.5
DL-2-Aminoadipic acid	PP_0901	DNA-binding response regulator	-1.5
DL-2-Aminoadipic acid	PP_0902	integral membrane sensor signal transduction histidine kinase	-1.7
DL-2-Aminoadipic acid	PP_1430	putative periplasmic serine endoprotease DegP-like	-1.5
DL-2-Aminoadipic acid	PP_1728	conserved membrane protein of unknown function	-1.5
DL-2-Aminoadipic acid	PP_2666	conserved exported protein of unknown function	+2.1
DL-2-Aminoadipic acid	PP_2671	Sensor histidine kinase	+1.8
DL-2-Aminoadipic acid	PP_2672	Transcriptional activator protein ExaE	+1.7
DL-2-Aminoadipic acid	PP_2674	quinoprotein ethanol dehydrogenase	+2.2
DL-2-Aminoadipic acid	PP_2683	putative sensory box histidine kinase/response regulator	+1.9
DL-2-Aminoadipic acid	PP_3839	short-chain alcohol dehydrogenase	-2.5
DL-2-Aminoadipic acid	PP_4487	acetyl-CoA synthetase	-2.6
DL-2-Aminoadipic acid	PP_4493	D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data)	-1.3
DL-3-Hydroxybutyric acid sodium salt	PP_0055	transcriptional regulator	-1.4
DL-3-Hydroxybutyric acid sodium salt	PP_0056	choline dehydrogenase	-1.7
DL-3-Hydroxybutyric acid sodium salt	PP_0057	major facilitator family transporter	-2.4
DL-3-Hydroxybutyric acid sodium salt	PP_2084	Putative regulator of ribonuclease activity	-1.3
DL-3-Hydroxybutyric acid sodium salt	PP_2806	Transcriptional regulator, TetR family	-1.8
DL-3-Hydroxybutyric acid sodium salt	PP_3073	3-hydroxybutyrate dehydrogenase	-4.5
DL-3-Hydroxybutyric acid sodium salt	PP_3074	D-beta-hydroxybutyrate permease	-3.8
DL-3-Hydroxybutyric acid sodium salt	PP_3076	putative ABC transporter permease protein	-1.2
DL-3-Hydroxybutyric acid sodium salt	PP_3122	acetoacetyl CoA-transferase (subunit A)	-3.8
DL-3-Hydroxybutyric acid sodium salt	PP_3123	acetoacetyl CoA-transferase (subunit B)	-6.6
DL-3-Hydroxyisobutyric acid sodium salt	PP_0055	transcriptional regulator	-7.1
DL-3-Hydroxyisobutyric acid sodium salt	PP_0056	choline dehydrogenase	-5.7
DL-3-Hydroxyisobutyric acid sodium salt	PP_0057	major facilitator family transporter	-6.3
DL-3-Hydroxyisobutyric acid sodium salt	PP_0595	Transcriptional regulator, LysR family	-4.3
DL-3-Hydroxyisobutyric acid sodium salt	PP_0596	Omega-amino acid--pyruvate aminotransferase	-3.6
DL-3-Hydroxyisobutyric acid sodium salt	PP_0597	methylmalonate-semialdehyde dehydrogenase	-5.7
DL-3-Hydroxyisobutyric acid sodium salt	PP_3491	Enoly-coenzyme A hydratase/isomerase family protein	-1.1
DL-3-Hydroxyisobutyric acid sodium salt	PP_4628	conserved protein of unknown function	-3.8
DL-3-Hydroxyisobutyric acid sodium salt	PP_4666	3-hydroxyisobutyrate dehydrogenase	-4.7
DL-3-Hydroxyisobutyric acid sodium salt	PP_4667	methylmalonate-semialdehyde dehydrogenase	-5.0
DL-3-Hydroxyisobutyric acid sodium salt	PP_4668	Transcriptional regulator, LysR family	-3.1
Decanoic acid	PP_0137	glutamate/aspartate-proton DAACS transporter	+1.5
Decanoic acid	PP_0266	Agmatine deiminase	-1.1
Decanoic acid	PP_0370	Acyl-CoA dehydrogenase family protein	-1.2
Decanoic acid	PP_0567	Biosynthetic arginine decarboxylase	variable
Decanoic acid	PP_1067	Sensor histidine kinase	+1.2
Decanoic acid	PP_1918	septation protein	-2.0
Decanoic acid	PP_2130	putative Soluble lytic transglycosylase	-1.4
Decanoic acid	PP_2892	conserved exported protein of unknown function	-1.1
Decanoic acid	PP_2893	conserved exported protein of unknown function	variable
Decanoic acid	PP_2932	Amidase family protein	-2.1
Decanoic acid	PP_3154	lipid A 3-O-deacylase	variable
Decanoic acid	PP_3456	Multidrug resistance protein MexB	+1.0
Decanoic acid	PP_3627	conserved protein of unknown function	-2.3
Decanoic acid	PP_4148	putative inner membrane ABC transporter permease protein	+1.4
Decanoic acid	PP_4149	putative inner membrane ABC transporter permease protein	variable
Decanoic acid	PP_4548	putative Oxidoreductase	-1.2
Decanoic acid	PP_4549	long-chain-fatty-acid/CoA ligase	-5.0
Decanoic acid	PP_4550	long-chain-fatty-acid/CoA ligase	-1.8
Decanoic acid	PP_4798	putative Membrane-bound lytic murein transglycosylase	-1.3
Decanoic acid	PP_4817	MaoC domain protein	+1.6
Decanoic acid	PP_5003	poly(3-hydroxyalkanoate) polymerase 1	+2.0
Decanoic acid	PP_5005	Poly(3-hydroxyalkanoate) polymerase 2	+1.2
Decanoic acid	PP_5006	Transcriptional regulator, TetR family	+1.5
Decanoic acid	PP_5057	Peptidase, M23/M37 family	variable
Decanoic acid	PP_5109	membrane component of the ABC transporter FtsEX involved in cellular division	variable
Delta-Decalactone	PP_0248	Probable alpha-L-glutamate ligase	-1.4
Delta-Decalactone	PP_0370	Acyl-CoA dehydrogenase family protein	-1.6
Delta-Decalactone	PP_0413	Polyamine ABC transporter, permease protein	-1.9
Delta-Decalactone	PP_0428	aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase	-1.3
Delta-Decalactone	PP_0598	paraquat-inducible protein A	+1.6
Delta-Decalactone	PP_0599	paraquat-inducible protein B	+1.5
Delta-Decalactone	PP_0672	Sensory box protein	+1.4
Delta-Decalactone	PP_0680	ATP-dependent protease-like protein	-1.3
Delta-Decalactone	PP_0763	Medium-chain-fatty-acid CoA ligase	-3.0
Delta-Decalactone	PP_0765	putative adhesin (DUF1302) (from data)	-1.3
Delta-Decalactone	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-2.1
Delta-Decalactone	PP_0767	Transcriptional regulator, LuxR family	-4.2
Delta-Decalactone	PP_0988	glycine dehydrogenase	-2.1
Delta-Decalactone	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-2.3
Delta-Decalactone	PP_1080	putative oxidoreductase molybdopterin-binding	+1.1
Delta-Decalactone	PP_1238	putative Lipoprotein	+1.6
Delta-Decalactone	PP_1301	quality control serine endoprotease DegS	-1.2
Delta-Decalactone	PP_1427	RNA polymerase sigma E factor	-1.6
Delta-Decalactone	PP_1737	conserved protein of unknown function	-1.1
Delta-Decalactone	PP_1761	diguanylate cyclase with phosphodiesterase domain	+2.2
Delta-Decalactone	PP_1816	Alcohol dehydrogenase, zinc-containing	+1.0
Delta-Decalactone	PP_1875	Sensor histidine kinase/response regulator	+1.6
Delta-Decalactone	PP_1968	TetR family transcriptional regulator	+1.5
Delta-Decalactone	PP_2019	adhesin-associated MmpL efflux pump (from data)	-2.3
Delta-Decalactone	PP_2082	phosphoenolpyruvate synthetase	+1.6
Delta-Decalactone	PP_2304	putative Peptidyl-prolyl cis-trans isomerase D	-2.7
Delta-Decalactone	PP_2305	conserved protein of unknown function	-1.3
Delta-Decalactone	PP_2436	Transcriptional regulator, LysR family	-5.5
Delta-Decalactone	PP_2662	conserved exported protein of unknown function	+3.5
Delta-Decalactone	PP_2663	conserved protein of unknown function	+4.2
Delta-Decalactone	PP_2664	putative hybrid sensor and regulator, histidine kinase	+4.0
Delta-Decalactone	PP_2666	conserved exported protein of unknown function	+3.1
Delta-Decalactone	PP_2680	aldehyde dehydrogenase	-2.5
Delta-Decalactone	PP_2683	putative sensory box histidine kinase/response regulator	+3.5
Delta-Decalactone	PP_3300	Transcriptional regulator, tetR family	-1.9
Delta-Decalactone	PP_3923	Phosphoglycerate mutase	-3.7
Delta-Decalactone	PP_3925	conserved protein of unknown function	-4.3
Delta-Decalactone	PP_4147	microcin C transporter - periplasmic binding protein	+1.4
Delta-Decalactone	PP_4149	putative inner membrane ABC transporter permease protein	+1.2
Delta-Decalactone	PP_4150	microcin C transporter - ATP binding subunit	+1.4
Delta-Decalactone	PP_4164	Alpha/beta hydrolase	-1.9
Delta-Decalactone	PP_4550	long-chain-fatty-acid/CoA ligase	-1.7
Delta-Decalactone	PP_4762	Acyl-CoA thioesterase II	+1.8
Delta-Decalactone	PP_4798	putative Membrane-bound lytic murein transglycosylase	-1.4
Delta-Decalactone	PP_4948	Acyl-CoA dehydrogenase family protein	-3.0
Delta-Decalactone	PP_5003	poly(3-hydroxyalkanoate) polymerase 1	+1.4
Delta-Decalactone	PP_5057	Peptidase, M23/M37 family	-2.1
Delta-Decalactone	PP_5109	membrane component of the ABC transporter FtsEX involved in cellular division	-2.6
Delta-Decalactone	PP_5745	paraquat-inducible protein A	+1.5
Delta-Dodecalactone	PP_0248	Probable alpha-L-glutamate ligase	-1.8
Delta-Dodecalactone	PP_0413	Polyamine ABC transporter, permease protein	-1.6
Delta-Dodecalactone	PP_0765	putative adhesin (DUF1302) (from data)	-5.2
Delta-Dodecalactone	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-5.7
Delta-Dodecalactone	PP_0767	Transcriptional regulator, LuxR family	-5.2
Delta-Dodecalactone	PP_0901	DNA-binding response regulator	-2.6
Delta-Dodecalactone	PP_0902	integral membrane sensor signal transduction histidine kinase	-2.0
Delta-Dodecalactone	PP_0988	glycine dehydrogenase	-1.5
Delta-Dodecalactone	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-1.5
Delta-Dodecalactone	PP_1112	conserved membrane protein of unknown function	+1.5
Delta-Dodecalactone	PP_1182	Sensor histidine kinase	-2.0
Delta-Dodecalactone	PP_1351	putative 2-dehydropantoate 2-reductase	-1.1
Delta-Dodecalactone	PP_1714	FKBP-type peptidyl-prolyl cis-trans isomerase	-1.3
Delta-Dodecalactone	PP_1761	diguanylate cyclase with phosphodiesterase domain	+2.0
Delta-Dodecalactone	PP_1875	Sensor histidine kinase/response regulator	+1.1
Delta-Dodecalactone	PP_2018	adhesin-associated BNR repeat protein (from data)	-4.5
Delta-Dodecalactone	PP_2019	adhesin-associated MmpL efflux pump (from data)	-5.0
Delta-Dodecalactone	PP_2806	Transcriptional regulator, TetR family	-2.8
Delta-Dodecalactone	PP_3819	glutathione reductase (NADPH)	-1.3
Delta-Dodecalactone	PP_3925	conserved protein of unknown function	-1.2
Delta-Dodecalactone	PP_4549	long-chain-fatty-acid/CoA ligase	-4.2
Delta-Dodecalactone	PP_4779	AMP nucleosidase	-1.8
Delta-Dodecalactone	PP_4817	MaoC domain protein	-5.1
Delta-Dodecalactone	PP_5003	poly(3-hydroxyalkanoate) polymerase 1	+5.5
Delta-Dodecalactone	PP_5005	Poly(3-hydroxyalkanoate) polymerase 2	+1.8
Delta-Dodecalactone	PP_5006	Transcriptional regulator, TetR family	+2.8
Delta-Nonalactone	PP_0058	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	+1.6
Delta-Nonalactone	PP_0088	putative alkanal monooxygenase	+1.0
Delta-Nonalactone	PP_0118	zinc import ATP-binding protein	+1.4
Delta-Nonalactone	PP_0133	Alginate biosynthesis transcriptional regulatory protein AlgB	+1.1
Delta-Nonalactone	PP_0137	glutamate/aspartate-proton DAACS transporter	+1.3
Delta-Nonalactone	PP_0370	Acyl-CoA dehydrogenase family protein	-3.4
Delta-Nonalactone	PP_0413	Polyamine ABC transporter, permease protein	-1.9
Delta-Nonalactone	PP_0428	aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase	-2.0
Delta-Nonalactone	PP_0598	paraquat-inducible protein A	+1.8
Delta-Nonalactone	PP_0599	paraquat-inducible protein B	+1.6
Delta-Nonalactone	PP_0680	ATP-dependent protease-like protein	-1.9
Delta-Nonalactone	PP_0763	Medium-chain-fatty-acid CoA ligase	-2.1
Delta-Nonalactone	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-1.4
Delta-Nonalactone	PP_0767	Transcriptional regulator, LuxR family	-4.0
Delta-Nonalactone	PP_0878	dipeptide ABC transporter, binding subunit	+1.6
Delta-Nonalactone	PP_0887	Sensor histidine kinase	-1.7
Delta-Nonalactone	PP_0988	glycine dehydrogenase	-3.9
Delta-Nonalactone	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-4.5
Delta-Nonalactone	PP_1074	DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate	+5.1
Delta-Nonalactone	PP_1119	conserved protein of unknown function	+1.3
Delta-Nonalactone	PP_1204	putative Lipoprotein	+1.8
Delta-Nonalactone	PP_1206	basic-amino-acid specific porin OprD	+2.5
Delta-Nonalactone	PP_1238	putative Lipoprotein	+2.1
Delta-Nonalactone	PP_1351	putative 2-dehydropantoate 2-reductase	-1.1
Delta-Nonalactone	PP_1453	putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity	+2.2
Delta-Nonalactone	PP_1621	Protein-L-isoaspartate O-methyltransferase	+1.2
Delta-Nonalactone	PP_1761	diguanylate cyclase with phosphodiesterase domain	+1.6
Delta-Nonalactone	PP_1917	4-amino-4-deoxychorismate lyase	+1.5
Delta-Nonalactone	PP_1993	putative motility protein fimV	-1.3
Delta-Nonalactone	PP_2013	conserved protein of unknown function	-1.5
Delta-Nonalactone	PP_2019	adhesin-associated MmpL efflux pump (from data)	-1.8
Delta-Nonalactone	PP_2082	phosphoenolpyruvate synthetase	+2.6
Delta-Nonalactone	PP_2148	transcription-repair coupling factor	+2.5
Delta-Nonalactone	PP_2436	Transcriptional regulator, LysR family	-3.8
Delta-Nonalactone	PP_2662	conserved exported protein of unknown function	+2.5
Delta-Nonalactone	PP_2663	conserved protein of unknown function	+2.8
Delta-Nonalactone	PP_2664	putative hybrid sensor and regulator, histidine kinase	+2.3
Delta-Nonalactone	PP_2666	conserved exported protein of unknown function	+2.1
Delta-Nonalactone	PP_2683	putative sensory box histidine kinase/response regulator	+2.0
Delta-Nonalactone	PP_3300	Transcriptional regulator, tetR family	-2.1
Delta-Nonalactone	PP_3754	Beta-ketothiolase BktB	-2.0
Delta-Nonalactone	PP_3755	3-hydroxybutyryl-CoA dehydrogenase	-1.5
Delta-Nonalactone	PP_3925	conserved protein of unknown function	-2.9
Delta-Nonalactone	PP_4147	microcin C transporter - periplasmic binding protein	+2.5
Delta-Nonalactone	PP_4148	putative inner membrane ABC transporter permease protein	+1.9
Delta-Nonalactone	PP_4149	putative inner membrane ABC transporter permease protein	+2.4
Delta-Nonalactone	PP_4150	microcin C transporter - ATP binding subunit	+2.6
Delta-Nonalactone	PP_4164	Alpha/beta hydrolase	-4.5
Delta-Nonalactone	PP_4277	Transcriptional regulator, GntR family	-1.3
Delta-Nonalactone	PP_4477	N-succinylarginine dihydrolase	-1.7
Delta-Nonalactone	PP_4574	conserved protein of unknown function	+1.1
Delta-Nonalactone	PP_4629	Sensory box protein	+1.6
Delta-Nonalactone	PP_4762	Acyl-CoA thioesterase II	+9.3
Delta-Nonalactone	PP_4840	D-alanine, beta-alanine, D-serine, glycine permease	-1.5
Delta-Nonalactone	PP_4933	conserved protein of unknown function	+1.7
Delta-Nonalactone	PP_4948	Acyl-CoA dehydrogenase family protein	-3.2
Delta-Nonalactone	PP_5057	Peptidase, M23/M37 family	-3.4
Delta-Nonalactone	PP_5109	membrane component of the ABC transporter FtsEX involved in cellular division	-4.8
Delta-Nonalactone	PP_5158	conserved protein of unknown function	-1.0
Delta-Nonalactone	PP_5160	conserved exported protein of unknown function	-1.4
Delta-Nonalactone	PP_5178	spermidine/putrescine ABC transporter - inner membrane subunit	-2.0
Delta-Nonalactone	PP_5179	spermidine/putrescine ABC transporter - ATP binding subunit	-2.0
Delta-Nonalactone	PP_5270	D-amino-acid:quinone oxidoreductase (deaminating)	+1.3
Delta-Nonalactone	PP_5358	conserved protein of unknown function	+2.2
Delta-Nonalactone	PP_5380	copper resistance protein A	+1.8
Delta-Nonalactone	PP_5745	paraquat-inducible protein A	+1.8
Delta-Undecalactone	PP_0133	Alginate biosynthesis transcriptional regulatory protein AlgB	+1.1
Delta-Undecalactone	PP_0145	Na+/Pi-cotransporter	-1.3
Delta-Undecalactone	PP_0248	Probable alpha-L-glutamate ligase	-1.8
Delta-Undecalactone	PP_0370	Acyl-CoA dehydrogenase family protein	-4.5
Delta-Undecalactone	PP_0413	Polyamine ABC transporter, permease protein	-2.5
Delta-Undecalactone	PP_0414	Polyamine ABC transporter, permease protein	-2.1
Delta-Undecalactone	PP_0763	Medium-chain-fatty-acid CoA ligase	-2.7
Delta-Undecalactone	PP_0765	putative adhesin (DUF1302) (from data)	-4.1
Delta-Undecalactone	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-3.7
Delta-Undecalactone	PP_0767	Transcriptional regulator, LuxR family	-6.5
Delta-Undecalactone	PP_0901	DNA-binding response regulator	-3.8
Delta-Undecalactone	PP_0902	integral membrane sensor signal transduction histidine kinase	-1.7
Delta-Undecalactone	PP_0986	aminomethyltransferase	-3.5
Delta-Undecalactone	PP_0988	glycine dehydrogenase	-2.1
Delta-Undecalactone	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-1.9
Delta-Undecalactone	PP_1181	DNA-binding response regulator	-1.6
Delta-Undecalactone	PP_1291	PhoH family protein	+1.9
Delta-Undecalactone	PP_1430	putative periplasmic serine endoprotease DegP-like	-2.0
Delta-Undecalactone	PP_1761	diguanylate cyclase with phosphodiesterase domain	+1.4
Delta-Undecalactone	PP_1875	Sensor histidine kinase/response regulator	+1.5
Delta-Undecalactone	PP_2018	adhesin-associated BNR repeat protein (from data)	-3.4
Delta-Undecalactone	PP_2019	adhesin-associated MmpL efflux pump (from data)	-4.0
Delta-Undecalactone	PP_2436	Transcriptional regulator, LysR family	-6.6
Delta-Undecalactone	PP_2662	conserved exported protein of unknown function	+2.6
Delta-Undecalactone	PP_2663	conserved protein of unknown function	+2.8
Delta-Undecalactone	PP_2664	putative hybrid sensor and regulator, histidine kinase	+2.8
Delta-Undecalactone	PP_2666	conserved exported protein of unknown function	+2.4
Delta-Undecalactone	PP_2667	ABC transporter	+1.2
Delta-Undecalactone	PP_2669	putative Outer membrane protein	+1.1
Delta-Undecalactone	PP_2679	quinoprotein ethanol dehydrogenase	+1.1
Delta-Undecalactone	PP_2683	putative sensory box histidine kinase/response regulator	+2.3
Delta-Undecalactone	PP_2806	Transcriptional regulator, TetR family	-3.9
Delta-Undecalactone	PP_2817	Multidrug efflux RND membrane fusion protein MexC	-2.5
Delta-Undecalactone	PP_2818	Multidrug efflux RND transporter MexD	-2.3
Delta-Undecalactone	PP_3200	conserved exported protein of unknown function	+1.7
Delta-Undecalactone	PP_3300	Transcriptional regulator, tetR family	-1.4
Delta-Undecalactone	PP_3453	putative Sensor protein RstB	-1.1
Delta-Undecalactone	PP_3455	Multidrug efflux RND membrane fusion protein	+1.4
Delta-Undecalactone	PP_3456	Multidrug resistance protein MexB	+1.1
Delta-Undecalactone	PP_3555	putative Transmembrane sensor	-1.7
Delta-Undecalactone	PP_3638	putative Acyl-CoA dehydrogenase	-1.0
Delta-Undecalactone	PP_3731	Transcriptional regulator, TetR family	-1.6
Delta-Undecalactone	PP_3925	conserved protein of unknown function	-5.7
Delta-Undecalactone	PP_4172	conserved exported protein of unknown function	-2.4
Delta-Undecalactone	PP_4173	Sensor histidine kinase/response regulator	-2.1
Delta-Undecalactone	PP_4549	long-chain-fatty-acid/CoA ligase	-1.4
Delta-Undecalactone	PP_4779	AMP nucleosidase	-2.2
Delta-Undecalactone	PP_4817	MaoC domain protein	-6.5
Delta-Undecalactone	PP_4948	Acyl-CoA dehydrogenase family protein	-2.1
Delta-Undecalactone	PP_5278	4-guanidinobutyraldehyde dehydrogenase	+1.5
Ethanol	PP_1058	conserved protein of unknown function	+1.7
Ethanol	PP_4487	acetyl-CoA synthetase	-2.5	Yes
Ethyl decanoate	PP_0765	putative adhesin (DUF1302) (from data)	-2.8
Ethyl decanoate	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-2.8
Ethyl decanoate	PP_0767	Transcriptional regulator, LuxR family	-2.6
Ethyl decanoate	PP_0940	putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD	variable
Ethyl decanoate	PP_1761	diguanylate cyclase with phosphodiesterase domain	+1.3
Ethyl decanoate	PP_1968	TetR family transcriptional regulator	-5.5
Ethyl decanoate	PP_2671	Sensor histidine kinase	-3.4
Ethyl decanoate	PP_2672	Transcriptional activator protein ExaE	variable
Ethyl decanoate	PP_2674	quinoprotein ethanol dehydrogenase	variable
Ethyl decanoate	PP_2806	Transcriptional regulator, TetR family	+3.3
Ethyl decanoate	PP_4923	Outer membrane efflux protein	variable
Ethyl decanoate	PP_5003	poly(3-hydroxyalkanoate) polymerase 1	+1.5
Ferulic Acid	PP_0118	zinc import ATP-binding protein	-1.4
Ferulic Acid	PP_0902	integral membrane sensor signal transduction histidine kinase	variable
Ferulic Acid	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-1.2
Ferulic Acid	PP_1150	putative Membrane protein	-2.6
Ferulic Acid	PP_1151	conserved protein of unknown function	variable
Ferulic Acid	PP_1152	putative membrane fusion efflux protein	-3.5
Ferulic Acid	PP_1375	transcription regulatory protein (pca regulon)	-5.4
Ferulic Acid	PP_1377	beta-ketoadipyl-CoA thiolase	-7.7	Yes
Ferulic Acid	PP_1379	3-carboxy-cis,cis-muconate cycloisomerase	-6.1
Ferulic Acid	PP_1380	3-oxoadipate enol-lactonase 2	-5.7	Yes
Ferulic Acid	PP_1615	Transcriptional regulator, LysR family	-2.8	Yes
Ferulic Acid	PP_1616	formaldehyde dehydrogenase, glutathione-dependent	-4.5	Yes
Ferulic Acid	PP_3356	p-coumarate CoA-ligase (EC 6.2.1.12) (from data)	-4.1
Ferulic Acid	PP_3357	p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data)	-3.6
Ferulic Acid	PP_3358	hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data)	-2.9
Ferulic Acid	PP_3493	Transcriptional regulator, LysR family	variable
Ferulic Acid	PP_3736	vanillate O-demethylase oxygenase subunit	-6.2	Yes
Ferulic Acid	PP_3737	vanillate O-demethylase oxidoreductase	-4.4	Yes
Ferulic Acid	PP_3952	3-oxoadipate CoA-transferase subunit A	-7.0	Yes
Ferulic Acid	PP_4655	protocatechuate 3,4-dioxygenase alpha chain	-5.0	Yes
Ferulic Acid	PP_4656	protocatechuate 3,4-dioxygenase beta chain	-6.1
Glutaric acid	PP_1400	Alpha-ketoglutarate permease	-4.8
Glutaric acid	PP_1401	C4-dicarboxylate transport transcriptional regulatory protein	-5.2
Glutaric acid	PP_1402	C4-dicarboxylate transport sensor protein	-4.6
Glutaric acid	PP_1403	periplasmic beta-D-glucoside glucohydrolase	-1.5
Glutaric acid	PP_2909	glutarate hydroxylase (from data)	-5.2
Glutaric acid	PP_2910	L-2-hydroxyglutarate oxidase	-5.0
Glycerol	PP_0506	putative ABC efflux transporter, permease protein	variable
Glycerol	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	-2.1
Glycerol	PP_1789	Hydrolase, haloacid dehalogenase-like family	-1.6
Glycerol	PP_3443	putative glyceraldehyde-3-phosphate dehydrogenase	-1.4	Yes
Glycerol	PP_4980	ATP-dependent RNA helicase	variable
Glycerol	PP_5157	conserved exported protein of unknown function	variable
Glycerol	PP_5320	two-component system DNA-binding transcriptional dual response regulator PhoB	-1.6
Heptanoic acid	PP_0370	Acyl-CoA dehydrogenase family protein	-3.2
Heptanoic acid	PP_4549	long-chain-fatty-acid/CoA ligase	-3.7
Hexanoic acid	PP_0176	putative efflux transporter	+3.9
Hexanoic acid	PP_0177	conserved protein of unknown function	+3.8
Hexanoic acid	PP_0178	putative efflux pump	+3.8
Hexanoic acid	PP_0179	putative efflux transporter	+3.5
Hexanoic acid	PP_0370	Acyl-CoA dehydrogenase family protein	-2.4
Hexanoic acid	PP_0763	Medium-chain-fatty-acid CoA ligase	-3.1
Hexanoic acid	PP_0767	Transcriptional regulator, LuxR family	-2.8
Hexanoic acid	PP_0859	putative ketoglutaramate omega-amidase	+2.1
Hexanoic acid	PP_1968	TetR family transcriptional regulator	+5.6
Hexanoic acid	PP_2326	Universal stress protein	-1.6
Hexanoic acid	PP_2437	putative Acyl-CoA dehydrogenase	+1.8
Hexanoic acid	PP_3554	Acyl-CoA dehydrogenase family protein	-1.3
Hexanoic acid	PP_3656	putative Aromatic compound-specific porin	+1.5
Hexanoic acid	PP_3657	P-nitrobenzoate reductase NfnB	+1.4
Hexanoic acid	PP_3658	putative Aromatic compound MFS transporter	+1.4
Hexanoic acid	PP_3659	transcriptional regulator, AraC family	+1.5
Hexanoic acid	PP_4147	microcin C transporter - periplasmic binding protein	+1.0
Hexanoic acid	PP_4548	putative Oxidoreductase	-1.0
Hexanoic acid	PP_4549	long-chain-fatty-acid/CoA ligase	-3.3
Hexanoic acid	PP_5358	conserved protein of unknown function	+1.3
Hydroxy-L-Proline	PP_0988	glycine dehydrogenase	-1.3
Hydroxy-L-Proline	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-1.1
Hydroxy-L-Proline	PP_1255	putative cis-4-hydroxy-D-proline oxidase	-8.6	Yes
Hydroxy-L-Proline	PP_1256	putative alpha-ketoglutarate semialdehyde dehydrogenase	-6.4	Yes
Hydroxy-L-Proline	PP_1257	putative 1-pyrroline-4-hydroxy-2-carboxylate deaminase	-7.9	Yes
Hydroxy-L-Proline	PP_1258	4-hydroxyproline epimerase	-7.0	Yes
Hydroxy-L-Proline	PP_1259	Aspartate-proton symporter	-7.7	Yes
Hydroxy-L-Proline	PP_4602	Transcriptional regulator, AraC family	-7.2	Yes
L-Alanine	PP_0495	type 1 L-asparaginase	+3.5
L-Alanine	PP_0659	Cystathionine gamma-synthase	+1.4
L-Alanine	PP_0697	ribosomal-protein-S18-alanine N-acetyltransferase	+1.5
L-Alanine	PP_0878	dipeptide ABC transporter, binding subunit	-2.2
L-Alanine	PP_0879	dipeptide ABC transporter - putative ATP binding subunit	-2.2
L-Alanine	PP_0881	dipeptide ABC transporter - putative membrane subunit	-1.9
L-Alanine	PP_1059	Uncharacterized amino acid permease YtnA	-1.2	Yes
L-Alanine	PP_1137	high-affinity branched-chain amino acid transporter, ATP binding	-2.2
L-Alanine	PP_1139	branched chain amino acid transporter - permease subunit	-2.0	Yes
L-Alanine	PP_1140	branched chain amino acid transporter - permease subunit	-1.6
L-Alanine	PP_1298	putative amino acid ABC transporter - permease subunit	-1.1	Yes
L-Alanine	PP_1313	Transcriptional regulator, AraC family	+3.4
L-Alanine	PP_1522	major cold shock protein	+1.3
L-Alanine	PP_2389	conserved protein of unknown function	+2.2
L-Alanine	PP_2908	DNA-binding transcriptional repressor	+4.1
L-Alanine	PP_4173	Sensor histidine kinase/response regulator	+1.5
L-Alanine	PP_4406	conserved protein of unknown function	+2.5
L-Alanine	PP_4483	histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit	+1.2
L-Alanine	PP_4484	histidine / lysine / arginine / ornithine ABC transporter - permease subunit	+1.9
L-Alanine	PP_4485	histidine / lysine / arginine / ornithine ABC transporter - permease subunit	+1.9
L-Alanine	PP_4486	lysine / arginine / ornithine ABC transporter - periplasmic binding protein	+1.5
L-Alanine	PP_4622	Hmg transcriptional repressor	+1.3
L-Alanine	PP_4776	AsnC family transcriptional regulator	+3.3
L-Alanine	PP_4863	high-affinity branched-chain amino acid transporter, ATP-binding	-1.5
L-Alanine	PP_4864	High-affinity branched-chain amino acid transport ATP-binding protein BraF	-1.6	Yes
L-Alanine	PP_4865	High-affinity branched-chain amino acid transport system permease protein BraE	-1.6
L-Alanine	PP_4866	High-affinity branched-chain amino acid transport system permease protein BraD	-1.7	Yes
L-Alanine	PP_4867	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like)	-1.2
L-Alanine	PP_4896	DNA mismatch repair protein MutL	+1.4
L-Alanine	PP_4923	Outer membrane efflux protein	-1.0
L-Alanine	PP_4947	proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase	+8.4
L-Alanine	PP_5270	D-amino-acid:quinone oxidoreductase (deaminating)	-2.5	Yes
L-Alanine	PP_5271	DNA-binding transcriptional dual regulator, leucine-binding	-2.9	Yes
L-Arginine	PP_0738	conserved protein of unknown function	-1.4
L-Arginine	PP_1393	putative transcriptional regulator	-1.4
L-Arginine	PP_1394	putative Acetolactate synthase, large subunit	-1.2
L-Arginine	PP_3721	arginine:pyruvate transaminase AruH (EC 2.6.1.84) (from data)	-1.2
L-Arginine	PP_3727	Amino-acid permease RocE	-1.2
L-Arginine	PP_3728	Sensor histidine kinase/response regulator	-1.4
L-Arginine	PP_3729	Periplasmic amino acid-binding protein-related protein	-1.5
L-Arginine	PP_3731	Transcriptional regulator, TetR family	+1.4
L-Arginine	PP_4477	N-succinylarginine dihydrolase	-5.6
L-Arginine	PP_4478	N-succinylglutamate 5-semialdehyde dehydrogenase	-4.2	Yes
L-Arginine	PP_4479	arginine N-succinyltransferase, subunit beta	-3.5
L-Arginine	PP_4483	histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit	-2.1	Yes
L-Arginine	PP_4484	histidine / lysine / arginine / ornithine ABC transporter - permease subunit	-2.2	Yes
L-Arginine	PP_4485	histidine / lysine / arginine / ornithine ABC transporter - permease subunit	-3.1	Yes
L-Arginine	PP_4486	lysine / arginine / ornithine ABC transporter - periplasmic binding protein	-2.7	Yes
L-Arginine	PP_4522	Transcriptional regulator, LysR family	-1.3
L-Arginine	PP_4523	putative Agmatinase	-1.5
L-Arginine	PP_5278	4-guanidinobutyraldehyde dehydrogenase	-1.6
L-Glutamic acid monopotassium salt monohydrate	PP_0058	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	-1.6
L-Glutamic acid monopotassium salt monohydrate	PP_0137	glutamate/aspartate-proton DAACS transporter	-3.9	Yes
L-Glutamic acid monopotassium salt monohydrate	PP_0594	Transcriptional regulator, TetR family	-2.4
L-Glutamic acid monopotassium salt monohydrate	PP_0785	putative cysZ protein, required for sulfate transport	+1.8
L-Glutamic acid monopotassium salt monohydrate	PP_1066	C4-dicarboxylate transport transcriptional regulatory protein	-4.4	Yes
L-Glutamic acid monopotassium salt monohydrate	PP_1067	Sensor histidine kinase	-4.4	Yes
L-Glutamic acid monopotassium salt monohydrate	PP_1068	glutamate / aspartate ABC transporter - ATP binding subunit	-3.4
L-Glutamic acid monopotassium salt monohydrate	PP_1069	glutamate / aspartate ABC transporter - permease subunit	-4.4	Yes
L-Glutamic acid monopotassium salt monohydrate	PP_1070	glutamate / aspartate ABC transporter - permease subunit	-4.6	Yes
L-Glutamic acid monopotassium salt monohydrate	PP_1071	glutamate / aspartate ABC transporter - periplasmic binding protein	-4.2	Yes
L-Glutamic acid monopotassium salt monohydrate	PP_1313	Transcriptional regulator, AraC family	+1.1
L-Glutamic acid monopotassium salt monohydrate	PP_1972	aromatic-amino-acid aminotransferase	-1.2
L-Glutamic acid monopotassium salt monohydrate	PP_2876	Beta-lactamase	+1.3
L-Glutamic acid monopotassium salt monohydrate	PP_3691	DNA helicase-related protein	+1.0
L-Glutamic acid monopotassium salt monohydrate	PP_4289	conserved membrane protein of unknown function	-1.8
L-Glutamic acid monopotassium salt monohydrate	PP_4576	allophanate hydrolase subunit	-1.6
L-Glutamic acid monopotassium salt monohydrate	PP_4578	Major facilitator family transporter	-1.0
L-Glutamic acid monopotassium salt monohydrate	PP_4579	Transcriptional regulator, LysR family	-1.2
L-Glutamine	PP_0118	zinc import ATP-binding protein	+1.2
L-Glutamine	PP_0137	glutamate/aspartate-proton DAACS transporter	-2.8	Yes
L-Glutamine	PP_0594	Transcriptional regulator, TetR family	-1.8
L-Glutamine	PP_0785	putative cysZ protein, required for sulfate transport	+1.1
L-Glutamine	PP_1066	C4-dicarboxylate transport transcriptional regulatory protein	-3.2	Yes
L-Glutamine	PP_1067	Sensor histidine kinase	-3.2	Yes
L-Glutamine	PP_1069	glutamate / aspartate ABC transporter - permease subunit	-2.3	Yes
L-Glutamine	PP_1070	glutamate / aspartate ABC transporter - permease subunit	-2.3	Yes
L-Glutamine	PP_1071	glutamate / aspartate ABC transporter - periplasmic binding protein	-3.1	Yes
L-Glutamine	PP_1972	aromatic-amino-acid aminotransferase	-1.1
L-Glutamine	PP_4860	putative Mannose-6-phosphate isomerase	-1.5	Yes
L-Histidine	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	-1.3
L-Histidine	PP_1367	formyltetrahydrofolate hydrolase	-2.7
L-Histidine	PP_5029	N-formylglutamate deformylase	-5.8	Yes
L-Histidine	PP_5030	Imidazolonepropionase	-4.9	Yes
L-Histidine	PP_5031	proline (histidine) APC transporter	-4.5	Yes
L-Histidine	PP_5032	Histidine ammonia-lyase	-4.7	Yes
L-Histidine	PP_5033	Urocanate hydratase	-5.6	Yes
L-Histidine	PP_5036	probable formiminoglutamate deiminase	-5.9	Yes
L-Isoleucine	PP_0878	dipeptide ABC transporter, binding subunit	-1.9
L-Isoleucine	PP_0879	dipeptide ABC transporter - putative ATP binding subunit	-2.2
L-Isoleucine	PP_0880	dipeptide ABC transporter - putative membrane subunit	-2.1
L-Isoleucine	PP_0881	dipeptide ABC transporter - putative membrane subunit	-2.5
L-Isoleucine	PP_1137	high-affinity branched-chain amino acid transporter, ATP binding	-2.4	Yes
L-Isoleucine	PP_1138	branched chain amino acid transporter - ATP binding subunit	-3.5
L-Isoleucine	PP_1139	branched chain amino acid transporter - permease subunit	-2.7	Yes
L-Isoleucine	PP_1140	branched chain amino acid transporter - permease subunit	-2.3	Yes
L-Isoleucine	PP_1141	branched-chain amino acids ABC transporter - periplasmic leucine binding subunit	-2.4	Yes
L-Isoleucine	PP_2211	Transcriptional regulator, AraC family	-3.6	Yes
L-Isoleucine	PP_2213	putative acyl-CoA synthetase	-3.2	Yes
L-Isoleucine	PP_2216	short-chain acyl-CoA dehydrogenase	-4.8	Yes
L-Isoleucine	PP_2389	conserved protein of unknown function	+1.6
L-Isoleucine	PP_4400	Bkd operon transcriptional regulator	-7.3	Yes
L-Isoleucine	PP_4401	branched-chain alpha-keto acid dehydrogenase complex, alpha subunit	-6.7	Yes
L-Isoleucine	PP_4402	branched-chain alpha-keto acid dehydrogenase complex, beta subunit	-5.8	Yes
L-Isoleucine	PP_4403	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	-6.7	Yes
L-Isoleucine	PP_4404	dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex	-3.3	Yes
L-Isoleucine	PP_4666	3-hydroxyisobutyrate dehydrogenase	-2.1	Yes
L-Isoleucine	PP_4667	methylmalonate-semialdehyde dehydrogenase	-1.8	Yes
L-Isoleucine	PP_4754	Transcriptional regulator, TetR family	+1.6
L-Isoleucine	PP_4863	high-affinity branched-chain amino acid transporter, ATP-binding	-2.0
L-Isoleucine	PP_4864	High-affinity branched-chain amino acid transport ATP-binding protein BraF	-1.8	Yes
L-Isoleucine	PP_4865	High-affinity branched-chain amino acid transport system permease protein BraE	-1.8	Yes
L-Isoleucine	PP_4866	High-affinity branched-chain amino acid transport system permease protein BraD	-1.8	Yes
L-Isoleucine	PP_4867	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like)	-1.6	Yes
L-Isoleucine	PP_4947	proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase	+1.5	Yes
L-Leucine	PP_0118	zinc import ATP-binding protein	+2.8
L-Leucine	PP_0510	Thioredoxin	+1.2
L-Leucine	PP_0540	conserved inner membrane protein	+2.2
L-Leucine	PP_0596	Omega-amino acid--pyruvate aminotransferase	+1.2
L-Leucine	PP_0625	Chaperone protein ClpB	-1.5
L-Leucine	PP_0881	dipeptide ABC transporter - putative membrane subunit	-1.8
L-Leucine	PP_1137	high-affinity branched-chain amino acid transporter, ATP binding	-2.0	Yes
L-Leucine	PP_1139	branched chain amino acid transporter - permease subunit	-1.8	Yes
L-Leucine	PP_1140	branched chain amino acid transporter - permease subunit	-1.9	Yes
L-Leucine	PP_1141	branched-chain amino acids ABC transporter - periplasmic leucine binding subunit	-3.1	Yes
L-Leucine	PP_2080	NAD-specific glutamate dehydrogenase	-1.5	Yes
L-Leucine	PP_2082	phosphoenolpyruvate synthetase	+1.2
L-Leucine	PP_2101	DNA-binding response regulator in two-component regulatory system with EvgS	+4.2
L-Leucine	PP_2245	Transcriptional regulator, Cro/CI family	+3.3
L-Leucine	PP_2430	Transcriptional regulator, AraC family	+3.4	Yes
L-Leucine	PP_2856	conserved exported protein of unknown function	+1.2
L-Leucine	PP_4006	Putative arginyl-tRNA--protein transferase	+2.3
L-Leucine	PP_4064	isovaleryl-CoA dehydrogenase	-3.7	Yes
L-Leucine	PP_4065	methylcrotonyl-CoA carboxylase biotin-containing subunit beta	-4.5	Yes
L-Leucine	PP_4179	Chaperone protein HtpG	-1.9
L-Leucine	PP_4197	Transcriptional regulator, GntR family	+1.5	Yes
L-Leucine	PP_4289	conserved membrane protein of unknown function	+1.4
L-Leucine	PP_4400	Bkd operon transcriptional regulator	-4.2	Yes
L-Leucine	PP_4401	branched-chain alpha-keto acid dehydrogenase complex, alpha subunit	-3.5	Yes
L-Leucine	PP_4402	branched-chain alpha-keto acid dehydrogenase complex, beta subunit	-3.8	Yes
L-Leucine	PP_4403	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	-4.3	Yes
L-Leucine	PP_4404	dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex	+1.6	Yes
L-Leucine	PP_4621	Homogentisate 1,2-dioxygenase	+1.0
L-Leucine	PP_4622	Hmg transcriptional repressor	+1.5
L-Leucine	PP_4729	factor used in recombination and DNA repair	+1.9
L-Leucine	PP_4754	Transcriptional regulator, TetR family	+4.0
L-Leucine	PP_4776	AsnC family transcriptional regulator	+3.3
L-Leucine	PP_4820	tRNA-dihydrouridine synthase B	+1.9
L-Leucine	PP_4863	high-affinity branched-chain amino acid transporter, ATP-binding	-1.6	Yes
L-Leucine	PP_4864	High-affinity branched-chain amino acid transport ATP-binding protein BraF	-1.8	Yes
L-Leucine	PP_4865	High-affinity branched-chain amino acid transport system permease protein BraE	-1.6	Yes
L-Leucine	PP_4866	High-affinity branched-chain amino acid transport system permease protein BraD	-1.7	Yes
L-Leucine	PP_4867	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like)	-1.2	Yes
L-Leucine	PP_4947	proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase	+2.9	Yes
L-Lysine	PP_0213	succinate-semialdehyde dehydrogenase (NADP+)	-3.6
L-Lysine	PP_0323	sarcosine oxidase subunit beta	+1.1
L-Lysine	PP_0382	5-aminopentanamidase	-4.6	Yes
L-Lysine	PP_0383	Lysine 2-monooxygenase	-5.6	Yes
L-Lysine	PP_0384	Transcriptional regulator, AsnC family	-5.7	Yes
L-Lysine	PP_1236	putative Glycine cleavage system transcriptional repressor	-1.7
L-Lysine	PP_2326	Universal stress protein	-2.7
L-Lysine	PP_2884	XRE family transcriptional regulator	variable
L-Lysine	PP_2910	L-2-hydroxyglutarate oxidase	-7.0
L-Lysine	PP_3591	Delta 1-piperideine-2-carboxylate reductase	-6.7
L-Lysine	PP_3592	Transcriptional regulator, RpiR family	-6.7
L-Lysine	PP_3593	L-lysine and D-lysine ABC transporter, substrate-binding component (from data)	-6.3
L-Lysine	PP_3594	L-lysine and D-lysine ABC transporter, permease component 1 (from data)	-6.6	Yes
L-Lysine	PP_3595	L-lysine and D-lysine ABC transporter, permease component 2 (from data)	-6.2	Yes
L-Lysine	PP_3596	D-lysine oxidase	-6.5
L-Lysine	PP_3597	L-lysine and D-lysine ABC transporter, ATPase component (from data)	-6.6
L-Lysine	PP_3727	Amino-acid permease RocE	-1.3
L-Lysine	PP_3731	Transcriptional regulator, TetR family	+2.6
L-Lysine	PP_4493	D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data)	-5.2
L-Lysine	PP_4494	putative LysR-type transcriptional activator protein	-1.2
L-Lysine	PP_4576	allophanate hydrolase subunit	-1.5
L-Lysine	PP_5181	spermidine/putrescine ABC transporter - periplasmic subunit	-1.2	Yes
L-Lysine	PP_5212	Oxidoreductase, iron-sulfur-binding	+1.9
L-Lysine	PP_5257	L-pipecolate oxidase	-7.4	Yes
L-Lysine	PP_5258	L-piperidine-6-carboxylate dehydrogenase	-5.7	Yes
L-Lysine	PP_5260	2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data)	-7.4	Yes
L-Lysine	PP_5358	conserved protein of unknown function	+1.2
L-Phenylalanine	PP_1377	beta-ketoadipyl-CoA thiolase	-3.8
L-Phenylalanine	PP_1878	conserved protein of unknown function	-1.4
L-Phenylalanine	PP_3080	tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase	-2.9
L-Phenylalanine	PP_3122	acetoacetyl CoA-transferase (subunit A)	-3.1
L-Phenylalanine	PP_3123	acetoacetyl CoA-transferase (subunit B)	-4.1	Yes
L-Phenylalanine	PP_3433	4-hydroxyphenylpyruvate dioxygenase	-5.9	Yes
L-Phenylalanine	PP_3527	Transcriptional regulator, TetR family	-1.9
L-Phenylalanine	PP_3555	putative Transmembrane sensor	-1.7
L-Phenylalanine	PP_3952	3-oxoadipate CoA-transferase subunit A	-3.6
L-Phenylalanine	PP_4333	CheW domain protein	-1.7
L-Phenylalanine	PP_4489	sigma-54 dependent transcriptional regulator	-2.8	Yes
L-Phenylalanine	PP_4495	aromatic amino acid transport protein	-2.7	Yes
L-Phenylalanine	PP_4619	Maleylacetoacetate isomerase	-5.1	Yes
L-Phenylalanine	PP_4621	Homogentisate 1,2-dioxygenase	-4.6	Yes
L-Phenylalanine	PP_5212	Oxidoreductase, iron-sulfur-binding	-1.6
L-Phenylalanine	PP_5236	conserved protein of unknown function	-1.5
L-Phenylalanine	PP_5426	conserved protein of unknown function	-1.5
L-Proline	PP_4947	proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase	-2.6	Yes
L-Valine	PP_0642	conserved membrane protein of unknown function	+2.0
L-Valine	PP_0940	putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD	+1.0
L-Valine	PP_0942	regulatory protease	+1.0
L-Valine	PP_1074	DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate	+1.8
L-Valine	PP_1127	Carboxylesterase	-1.7
L-Valine	PP_2457	DNA-binding transcriptional repressor	+1.2
L-Valine	PP_3491	Enoly-coenzyme A hydratase/isomerase family protein	-5.0	Yes
L-Valine	PP_3492	isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data)	-2.1	Yes
L-Valine	PP_3756	TetR family transcriptional regulator	-2.5
L-Valine	PP_4050	glycogen synthase	+1.1
L-Valine	PP_4064	isovaleryl-CoA dehydrogenase	-2.0	Yes
L-Valine	PP_4065	methylcrotonyl-CoA carboxylase biotin-containing subunit beta	-3.1	Yes
L-Valine	PP_4400	Bkd operon transcriptional regulator	-6.2	Yes
L-Valine	PP_4401	branched-chain alpha-keto acid dehydrogenase complex, alpha subunit	-4.5	Yes
L-Valine	PP_4402	branched-chain alpha-keto acid dehydrogenase complex, beta subunit	-4.0	Yes
L-Valine	PP_4403	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	-4.4	Yes
L-Valine	PP_4404	dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex	-4.2	Yes
L-Valine	PP_4666	3-hydroxyisobutyrate dehydrogenase	-8.0	Yes
L-Valine	PP_4667	methylmalonate-semialdehyde dehydrogenase	-5.7	Yes
L-Valine	PP_4668	Transcriptional regulator, LysR family	-5.1	Yes
L-Valine	PP_4681	conserved protein of unknown function	-1.6
L-Valine	PP_4754	Transcriptional regulator, TetR family	-1.7
L-Valine	PP_5149	threonine deaminase	-1.9
L-Valine	PP_5188	putative transcriptional regulator (AsnC/Lrp family)	-2.6	Yes
L-Valine	PP_5452	protein of unknown function	+1.7
L-tyrosine disodium salt	PP_0540	conserved inner membrane protein	-4.0	Yes
L-tyrosine disodium salt	PP_1416	putative Tricarboxylate transport protein TctA	-2.3
L-tyrosine disodium salt	PP_1420	Transcriptional regulatory protein tctD	-3.9
L-tyrosine disodium salt	PP_1421	putative Sensor histidine kinase TctE	-3.9
L-tyrosine disodium salt	PP_3527	Transcriptional regulator, TetR family	-1.2
L-tyrosine disodium salt	PP_4197	Transcriptional regulator, GntR family	-1.1
Lauric acid	PP_0370	Acyl-CoA dehydrogenase family protein	-1.5
Lauric acid	PP_1112	conserved membrane protein of unknown function	variable
Lauric acid	PP_1560	conserved protein of unknown function	variable
Lauric acid	PP_1563	putative Phage terminase, large subunit	variable
Lauric acid	PP_1564	conserved exported protein of unknown function	+1.2
Lauric acid	PP_1565	Phage portal protein, HK97 family	variable
Lauric acid	PP_1566	Peptidase U35	variable
Lauric acid	PP_1567	Capsid protein	+1.2
Lauric acid	PP_1689	putative Long-chain fatty acid transporter	-1.7
Lauric acid	PP_4549	long-chain-fatty-acid/CoA ligase	-4.5
Levulinic Acid	PP_0353	Exonuclease	+1.7
Levulinic Acid	PP_0354	CBS domain protein	+1.7
Levulinic Acid	PP_0680	ATP-dependent protease-like protein	-1.1
Levulinic Acid	PP_0859	putative ketoglutaramate omega-amidase	+1.2
Levulinic Acid	PP_1262	LysR family transcriptional regulator	-1.3
Levulinic Acid	PP_1291	PhoH family protein	-2.8
Levulinic Acid	PP_1635	DNA-binding response regulator	-3.4
Levulinic Acid	PP_1695	putative Sodium-solute symporter/sensory box histidine kinase/response regulator	-3.1
Levulinic Acid	PP_1766	methylthioribose-1-phosphate isomerase	-1.2
Levulinic Acid	PP_2333	GntR family transcriptional regulator	-5.1
Levulinic Acid	PP_2790	Sigma-54 dependent sensory box protein	-4.7
Levulinic Acid	PP_2791	4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data)	-6.0
Levulinic Acid	PP_3121	transcriptional regulator, LysR family	-4.1
Levulinic Acid	PP_3122	acetoacetyl CoA-transferase (subunit A)	-3.5
Levulinic Acid	PP_3123	acetoacetyl CoA-transferase (subunit B)	-3.3
Levulinic Acid	PP_3753	Transcriptional regulator, AraC family	-5.2
Levulinic Acid	PP_3754	Beta-ketothiolase BktB	-6.0
Levulinic Acid	PP_3755	3-hydroxybutyryl-CoA dehydrogenase	-3.8
Levulinic Acid	PP_3925	conserved protein of unknown function	-2.2
Levulinic Acid	PP_4628	conserved protein of unknown function	-3.9
Levulinic Acid	PP_4776	AsnC family transcriptional regulator	-1.4
Levulinic Acid	PP_4779	AMP nucleosidase	variable
Levulinic Acid	PP_4975	Long-chain acyl-CoA thioester hydrolase family protein	+1.0
Levulinic Acid	PP_5149	threonine deaminase	-1.1
Lignin Monomers	PP_0058	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	+3.4
Lignin Monomers	PP_0639	conserved protein of unknown function	+3.8
Lignin Monomers	PP_0640	conserved protein of unknown function	+3.7
Lignin Monomers	PP_0927	aromatic amino acid transport protein	-2.1
Lignin Monomers	PP_1689	putative Long-chain fatty acid transporter	-2.3
Lignin Monomers	PP_1752	conserved protein of unknown function	+1.2
Lignin Monomers	PP_1789	Hydrolase, haloacid dehalogenase-like family	+4.0
Lignin Monomers	PP_1968	TetR family transcriptional regulator	+1.7
Lignin Monomers	PP_4277	Transcriptional regulator, GntR family	-1.2
Lignin Monomers	PP_4628	conserved protein of unknown function	+1.8
Lignin Monomers	PP_4690	Rieske 2Fe-2S family protein	+1.5
Lignin Monomers	PP_4779	AMP nucleosidase	-1.9
Lignin Monomers	PP_4896	DNA mismatch repair protein MutL	+1.3
Lignin Monomers	PP_4975	Long-chain acyl-CoA thioester hydrolase family protein	+1.4
Lignin Monomers	PP_5212	Oxidoreductase, iron-sulfur-binding	+1.1
Lignin Monomers	PP_5314	Rubredoxin-NAD(+) reductase	variable
Mucic acid	PP_0612	FAD-dependent glycine/D-amino acid oxidase	-1.5
Mucic acid	PP_0901	DNA-binding response regulator	-4.0
Mucic acid	PP_0902	integral membrane sensor signal transduction histidine kinase	-3.5
Mucic acid	PP_3599	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data)	-6.0
Mucic acid	PP_3600	glucarate transporter	-4.6
Mucic acid	PP_3601	galactarate dehydratase	-5.1
Mucic acid	PP_3602	2,5-dioxovalerate dehydrogenase	-1.3
Mucic acid	PP_4813	PAP2 family protein/DedA family protein	-3.3
Myristic acid	PP_0370	Acyl-CoA dehydrogenase family protein	-1.7
Myristic acid	PP_1561	putative Phage holin	variable
Myristic acid	PP_1563	putative Phage terminase, large subunit	+1.2
Myristic acid	PP_1565	Phage portal protein, HK97 family	+1.3
Myristic acid	PP_1567	Capsid protein	+1.3
Myristic acid	PP_1572	conserved protein of unknown function	+1.0
Myristic acid	PP_1577	Phage tail tape meausure protein, lambda family	+1.0
Myristic acid	PP_1689	putative Long-chain fatty acid transporter	-1.5
Myristic acid	PP_4172	conserved exported protein of unknown function	+2.0
Myristic acid	PP_4173	Sensor histidine kinase/response regulator	+1.7
Myristic acid	PP_4493	D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data)	-1.1
Myristic acid	PP_4549	long-chain-fatty-acid/CoA ligase	-4.7	Yes
Myristic acid	PP_5003	poly(3-hydroxyalkanoate) polymerase 1	+1.4
Nonanoic acid	PP_0370	Acyl-CoA dehydrogenase family protein	-1.3
Nonanoic acid	PP_4549	long-chain-fatty-acid/CoA ligase	-4.5
Nonanoic acid	PP_4550	long-chain-fatty-acid/CoA ligase	-2.0
Nonanoic acid	PP_5003	poly(3-hydroxyalkanoate) polymerase 1	+1.6
Nonanoic acid	PP_5005	Poly(3-hydroxyalkanoate) polymerase 2	+1.2
Octanoic acid	PP_0370	Acyl-CoA dehydrogenase family protein	-2.6
Octanoic acid	PP_4549	long-chain-fatty-acid/CoA ligase	-4.5
Octanoic acid	PP_4550	long-chain-fatty-acid/CoA ligase	-1.8
Octanoic acid	PP_5003	poly(3-hydroxyalkanoate) polymerase 1	+1.3
Octanoic acid	PP_5005	Poly(3-hydroxyalkanoate) polymerase 2	+1.2
Oleic acid	PP_1063	DNA-binding transcriptional regulator, homocysteine-binding	-1.1
Oleic acid	PP_1845	Enoyl-CoA hydratase/isomerase family protein	-3.4
Oleic acid	PP_3776	putative permease (RarD protein)	-1.2
Oleic acid	PP_4549	long-chain-fatty-acid/CoA ligase	-4.2
Phenylacetic acid	PP_0176	putative efflux transporter	-1.1
Phenylacetic acid	PP_0178	putative efflux pump	-1.1
Phenylacetic acid	PP_0179	putative efflux transporter	-1.2
Phenylacetic acid	PP_0988	glycine dehydrogenase	-1.2
Phenylacetic acid	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-1.2
Phenylacetic acid	PP_3270	oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase	-6.2	Yes
Phenylacetic acid	PP_3271	phenylacetic acid-specific porin	-2.1
Phenylacetic acid	PP_3272	acetate permease	-6.5
Phenylacetic acid	PP_3273	conserved protein of unknown function	-3.8
Phenylacetic acid	PP_3274	ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit	-6.0	Yes
Phenylacetic acid	PP_3276	ring 1,2-phenylacetyl-CoA epoxidase beta subunit	-7.3	Yes
Phenylacetic acid	PP_3277	ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit	-6.1
Phenylacetic acid	PP_3278	ring 1,2-phenylacetyl-CoA epoxidase alpha subunit	-5.8	Yes
Phenylacetic acid	PP_3279	phenylacetate-CoA ligase	-7.2	Yes
Phenylacetic acid	PP_3280	3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase	-6.4	Yes
Phenylacetic acid	PP_3281	hydroxyphenylacetyl-CoA thioesterase	-3.2	Yes
Phenylacetic acid	PP_3282	3-hydroxyadipyl-CoA dehydrogenase	-7.6	Yes
Phenylacetic acid	PP_3283	1,2-epoxyphenylacetyl-CoA isomerase	-6.4	Yes
Phenylacetic acid	PP_3284	enoyl-CoA hydratase-isomerase	-7.8	Yes
Phenylacetic acid	PP_3285	detoxifying thioesterase of the phenylacetate degradation pathway	-7.4
Phenylacetic acid	PP_3493	Transcriptional regulator, LysR family	-3.8
Phenylacetic acid	PP_3494	conserved exported protein of unknown function	-3.5
Phenylacetic acid	PP_4172	conserved exported protein of unknown function	+1.4
Potassium acetate	PP_0154	Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data)	-1.5	Yes
Potassium acetate	PP_0353	Exonuclease	-1.6
Potassium acetate	PP_0354	CBS domain protein	+1.1
Potassium acetate	PP_0820	GCN5-related N-acetyltransferase	-1.4
Potassium acetate	PP_1695	putative Sodium-solute symporter/sensory box histidine kinase/response regulator	-4.8	Yes
Potassium acetate	PP_1743	acetate permease	-2.1
Potassium acetate	PP_2084	Putative regulator of ribonuclease activity	-1.3	Yes
Potassium acetate	PP_4487	acetyl-CoA synthetase	-4.8	Yes
Protocatechuic Acid	PP_1375	transcription regulatory protein (pca regulon)	-6.9	Yes
Protocatechuic Acid	PP_1376	4-hydroxybenzoate transporter	-4.1
Protocatechuic Acid	PP_1377	beta-ketoadipyl-CoA thiolase	-7.1	Yes
Protocatechuic Acid	PP_1378	alpha-ketoglutarate permease	-1.8
Protocatechuic Acid	PP_1379	3-carboxy-cis,cis-muconate cycloisomerase	-7.0	Yes
Protocatechuic Acid	PP_1380	3-oxoadipate enol-lactonase 2	-6.9	Yes
Protocatechuic Acid	PP_3952	3-oxoadipate CoA-transferase subunit A	-7.7	Yes
Protocatechuic Acid	PP_4655	protocatechuate 3,4-dioxygenase alpha chain	-6.3	Yes
Protocatechuic Acid	PP_4656	protocatechuate 3,4-dioxygenase beta chain	-7.0	Yes
Quinic Acid	PP_0927	aromatic amino acid transport protein	-1.0
Quinic Acid	PP_1375	transcription regulatory protein (pca regulon)	-2.3
Quinic Acid	PP_1377	beta-ketoadipyl-CoA thiolase	-5.9	Yes
Quinic Acid	PP_1378	alpha-ketoglutarate permease	-1.8
Quinic Acid	PP_1379	3-carboxy-cis,cis-muconate cycloisomerase	-4.8
Quinic Acid	PP_1380	3-oxoadipate enol-lactonase 2	-5.0	Yes
Quinic Acid	PP_2406	putative quinate/shikimate dehydrogenase	-2.1	Yes
Quinic Acid	PP_2553	Major facilitator family transporter	-2.5
Quinic Acid	PP_2554	putative 3-dehydroshikimate dehydratase	-2.7	Yes
Quinic Acid	PP_3952	3-oxoadipate CoA-transferase subunit A	-5.5	Yes
Quinic Acid	PP_4655	protocatechuate 3,4-dioxygenase alpha chain	-3.0	Yes
Quinic Acid	PP_4656	protocatechuate 3,4-dioxygenase beta chain	-2.9	Yes
Rhamnogalacturonan - from potato	PP_1165	conserved protein of unknown function	-1.5
Rhamnogalacturonan - from potato	PP_1167	D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data)	-1.7
Rhamnogalacturonan - from potato	PP_1168	D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data)	-1.7
Rhamnogalacturonan - from potato	PP_1169	D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data)	-1.9
Rhamnogalacturonan - from potato	PP_1170	D-glucaro-1,5-lactonase UxuL (from data)	-2.2
Rhamnogalacturonan - from potato	PP_1171	Uronate dehydrogenase (EC 1.1.1.203) (from data)	-1.7	Yes
Rhamnogalacturonan - from potato	PP_3599	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data)	-2.1	Yes
Rhamnogalacturonan - from potato	PP_3600	glucarate transporter	-1.7
Rhamnogalacturonan - from potato	PP_3601	galactarate dehydratase	-2.0
Sebacic acid	PP_2806	Transcriptional regulator, TetR family	+1.6
Sebacic acid	PP_4363	Sensor histidine kinase/response regulator	-1.6
Sodium acetate	PP_0154	Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data)	-2.4	Yes
Sodium acetate	PP_1635	DNA-binding response regulator	-7.7	Yes
Sodium acetate	PP_1695	putative Sodium-solute symporter/sensory box histidine kinase/response regulator	-4.9	Yes
Sodium acetate	PP_4487	acetyl-CoA synthetase	variable
Sodium butyrate	PP_0353	Exonuclease	+1.2
Sodium butyrate	PP_1262	LysR family transcriptional regulator	-1.3	Yes
Sodium butyrate	PP_1695	putative Sodium-solute symporter/sensory box histidine kinase/response regulator	-1.6
Sodium butyrate	PP_2326	Universal stress protein	-2.3
Sodium butyrate	PP_2806	Transcriptional regulator, TetR family	variable
Sodium butyrate	PP_3123	acetoacetyl CoA-transferase (subunit B)	-1.5
Sodium butyrate	PP_3380	2-ketogluconate utilization repressor	variable
Sodium butyrate	PP_3552	Sensory box histidine kinase	-3.5
Sodium butyrate	PP_3553	AMP-binding domain protein	-5.8
Sodium butyrate	PP_3554	Acyl-CoA dehydrogenase family protein	-3.2
Sodium butyrate	PP_3731	Transcriptional regulator, TetR family	-1.4
Sodium butyrate	PP_3753	Transcriptional regulator, AraC family	-2.8
Sodium butyrate	PP_3754	Beta-ketothiolase BktB	-5.4
Sodium butyrate	PP_3755	3-hydroxybutyryl-CoA dehydrogenase	-3.0
Sodium butyrate	PP_3756	TetR family transcriptional regulator	-4.7
Sodium butyrate	PP_4488	conserved exported protein of unknown function	-2.6	Yes
Sodium ferulate	PP_0413	Polyamine ABC transporter, permease protein	-2.5
Sodium ferulate	PP_0495	type 1 L-asparaginase	-2.2
Sodium ferulate	PP_0596	Omega-amino acid--pyruvate aminotransferase	-2.7
Sodium ferulate	PP_0612	FAD-dependent glycine/D-amino acid oxidase	-2.9
Sodium ferulate	PP_0904	InaA protein	-2.6
Sodium ferulate	PP_1058	conserved protein of unknown function	-1.4
Sodium ferulate	PP_1150	putative Membrane protein	-4.9
Sodium ferulate	PP_1151	conserved protein of unknown function	-3.8
Sodium ferulate	PP_1152	putative membrane fusion efflux protein	-4.5
Sodium ferulate	PP_1367	formyltetrahydrofolate hydrolase	-3.8
Sodium ferulate	PP_1375	transcription regulatory protein (pca regulon)	-4.0
Sodium ferulate	PP_1377	beta-ketoadipyl-CoA thiolase	-4.1
Sodium ferulate	PP_1378	alpha-ketoglutarate permease	-1.6
Sodium ferulate	PP_1379	3-carboxy-cis,cis-muconate cycloisomerase	-4.7
Sodium ferulate	PP_1380	3-oxoadipate enol-lactonase 2	-5.4
Sodium ferulate	PP_1616	formaldehyde dehydrogenase, glutathione-dependent	-2.8
Sodium ferulate	PP_1689	putative Long-chain fatty acid transporter	-1.3
Sodium ferulate	PP_1838	conserved membrane protein of unknown function	-1.2
Sodium ferulate	PP_2019	adhesin-associated MmpL efflux pump (from data)	-1.1
Sodium ferulate	PP_2326	Universal stress protein	-1.8
Sodium ferulate	PP_2806	Transcriptional regulator, TetR family	-3.8
Sodium ferulate	PP_3356	p-coumarate CoA-ligase (EC 6.2.1.12) (from data)	-4.5
Sodium ferulate	PP_3357	p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data)	-5.9
Sodium ferulate	PP_3358	hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data)	-5.0
Sodium ferulate	PP_3736	vanillate O-demethylase oxygenase subunit	-5.3
Sodium ferulate	PP_3737	vanillate O-demethylase oxidoreductase	-3.9
Sodium ferulate	PP_3819	glutathione reductase (NADPH)	-1.8
Sodium ferulate	PP_3952	3-oxoadipate CoA-transferase subunit A	-3.9
Sodium ferulate	PP_4260	conserved protein of unknown function	-2.3
Sodium ferulate	PP_4398	Major facilitator family transporter	+1.6
Sodium ferulate	PP_4514	putative esterase of the alpha-beta hydrolase superfamily	-1.3
Sodium ferulate	PP_4570	conserved protein of unknown function	-1.7
Sodium ferulate	PP_4655	protocatechuate 3,4-dioxygenase alpha chain	-4.2
Sodium ferulate	PP_4656	protocatechuate 3,4-dioxygenase beta chain	-4.3
Sodium ferulate	PP_4860	putative Mannose-6-phosphate isomerase	-2.0
Sodium ferulate	PP_4923	Outer membrane efflux protein	-2.1
Sodium ferulate	PP_5025	Glucans biosynthesis glucosyltransferase H	-2.5
Sodium ferulate	PP_5026	Glucans biosynthesis protein G	-3.2
Sodium ferulate	PP_5236	conserved protein of unknown function	-2.2
Sodium gluconate	PP_3377	2-ketogluconate transporter, putative	-1.6
Sodium gluconate	PP_3415	Transcriptional regulator, LacI family	+1.8
Sodium propionate	PP_1695	putative Sodium-solute symporter/sensory box histidine kinase/response regulator	-2.2	Yes
Sodium propionate	PP_2082	phosphoenolpyruvate synthetase	-1.4
Sodium propionate	PP_2216	short-chain acyl-CoA dehydrogenase	+2.7
Sodium propionate	PP_2333	GntR family transcriptional regulator	-3.2	Yes
Sodium propionate	PP_4628	conserved protein of unknown function	-4.7	Yes
Sodium pyruvate	PP_0540	conserved inner membrane protein	+1.6
Sodium pyruvate	PP_1563	putative Phage terminase, large subunit	+1.3
Sodium pyruvate	PP_1565	Phage portal protein, HK97 family	+1.2
Sodium pyruvate	PP_1743	acetate permease	-1.2	Yes
Sodium pyruvate	PP_3132	putative Polysaccharide transporter	+1.3
Sodium pyruvate	PP_4639	P-loop guanosine triphosphatase-dependent zinc chaperone	-1.2	Yes
Sodium pyruvate	PP_4640	conserved protein of unknown function	-2.5	Yes
Sodium pyruvate	PP_4641	putative transporter	-2.3	Yes
Sodium succinate dibasic hexahydrate	PP_0263	C4-dicarboxylate transport transcriptional regulatory protein	-1.8	Yes
Sodium succinate dibasic hexahydrate	PP_1188	C4-dicarboxylate transport protein	-2.8	Yes
Sorghum Hydrolysate	PP_0672	Sensory box protein	-1.6
Succinic Acid	PP_0263	C4-dicarboxylate transport transcriptional regulatory protein	-2.9
Succinic Acid	PP_0264	Sensor histidine kinase	-1.6
Succinic Acid	PP_1188	C4-dicarboxylate transport protein	-3.1	Yes
Trisodium citrate dihydrate	PP_0147	Citrate transporter	-1.5	Yes
Trisodium citrate dihydrate	PP_0908	conserved exported protein of unknown function	variable	Yes
Trisodium citrate dihydrate	PP_1034	multicopper oxidase	variable	Yes
Trisodium citrate dihydrate	PP_1291	PhoH family protein	variable	Yes
Trisodium citrate dihydrate	PP_1292	Cyclic pyranopterin monophosphate synthase accessory protein	variable
Trisodium citrate dihydrate	PP_1294	molybdopterin synthase large subunit	variable
Trisodium citrate dihydrate	PP_1416	putative Tricarboxylate transport protein TctA	-2.9	Yes
Trisodium citrate dihydrate	PP_1417	putative Tricarboxylate transport protein TctB	-2.1	Yes
Trisodium citrate dihydrate	PP_1418	putative Tricarboxylate transport protein TctC	-4.6	Yes
Trisodium citrate dihydrate	PP_1419	tricarboxylate-specific outer membrane porin	-2.9	Yes
Trisodium citrate dihydrate	PP_1420	Transcriptional regulatory protein tctD	-5.2	Yes
Trisodium citrate dihydrate	PP_1421	putative Sensor histidine kinase TctE	-5.8	Yes
Trisodium citrate dihydrate	PP_1703	assimilatory nitrate reductase/sulfite reductase	variable
Trisodium citrate dihydrate	PP_1705	nitrite reductase [NAD(P)H] large subunit	variable
Trisodium citrate dihydrate	PP_1706	Nitrite reductase	variable
Trisodium citrate dihydrate	PP_2092	Nitrate transporter	variable
Trisodium citrate dihydrate	PP_2093	NasT	variable
Trisodium citrate dihydrate	PP_2123	molybdenum::molybdopterin ligase	variable
Trisodium citrate dihydrate	PP_3828	Molybdate-binding periplasmic protein	-1.7
Trisodium citrate dihydrate	PP_3829	Molybdenum transport system permease protein ModB	variable
Trisodium citrate dihydrate	PP_4611	RNA polymerase sigma-70 factor, ECF subfamily	-1.3	Yes
Trisodium citrate dihydrate	PP_4613	outer membrane ferric citrate porin	-1.3	Yes
Trisodium citrate dihydrate	PP_4779	AMP nucleosidase	variable
Tween 20	PP_0370	Acyl-CoA dehydrogenase family protein	-1.4	Yes
Tween 20	PP_0765	putative adhesin (DUF1302) (from data)	-4.1	Yes
Tween 20	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-3.6	Yes
Tween 20	PP_0767	Transcriptional regulator, LuxR family	-3.0	Yes
Tween 20	PP_1560	conserved protein of unknown function	+1.3
Tween 20	PP_2018	adhesin-associated BNR repeat protein (from data)	-5.1
Tween 20	PP_2019	adhesin-associated MmpL efflux pump (from data)	-4.5	Yes
Tween 20	PP_4549	long-chain-fatty-acid/CoA ligase	-3.5	Yes
Valeric acid	PP_0176	putative efflux transporter	+1.2
Valeric acid	PP_0177	conserved protein of unknown function	+1.2
Valeric acid	PP_0179	putative efflux transporter	+1.2
Valeric acid	PP_0370	Acyl-CoA dehydrogenase family protein	-1.5
Valeric acid	PP_0763	Medium-chain-fatty-acid CoA ligase	-3.5
Valeric acid	PP_0767	Transcriptional regulator, LuxR family	-2.3
Valeric acid	PP_1560	conserved protein of unknown function	variable
Valeric acid	PP_1563	putative Phage terminase, large subunit	variable
Valeric acid	PP_1565	Phage portal protein, HK97 family	variable
Valeric acid	PP_1574	conserved protein of unknown function	variable
Valeric acid	PP_1577	Phage tail tape meausure protein, lambda family	variable
Valeric acid	PP_1968	TetR family transcriptional regulator	+3.6
Valeric acid	PP_2210	LysR family transcriptional regulator	+1.5
Valeric acid	PP_2437	putative Acyl-CoA dehydrogenase	+1.7
Valeric acid	PP_3132	putative Polysaccharide transporter	variable
Valeric acid	PP_3651	Sensor histidine kinase/response regulator	+1.0
Valeric acid	PP_5587	conserved protein of unknown function	+1.2
Valerolactone	PP_0409	Sensory box histidine kinase	-1.9
Valerolactone	PP_0575	conserved membrane protein of unknown function	+2.1
Valerolactone	PP_1058	conserved protein of unknown function	+1.4
Valerolactone	PP_1301	quality control serine endoprotease DegS	-2.2
Valerolactone	PP_1400	Alpha-ketoglutarate permease	-1.8
Valerolactone	PP_1401	C4-dicarboxylate transport transcriptional regulatory protein	-2.2
Valerolactone	PP_1402	C4-dicarboxylate transport sensor protein	-1.7
Valerolactone	PP_1761	diguanylate cyclase with phosphodiesterase domain	+1.9
Valerolactone	PP_2680	aldehyde dehydrogenase	+1.3
Valerolactone	PP_2910	L-2-hydroxyglutarate oxidase	-2.2
Valerolactone	PP_4172	conserved exported protein of unknown function	+2.0
Valerolactone	PP_4173	Sensor histidine kinase/response regulator	+2.1
Valerolactone	PP_4893	GTPase HflX	+1.1
Vanillic Acid	PP_1375	transcription regulatory protein (pca regulon)	-7.0
Vanillic Acid	PP_1377	beta-ketoadipyl-CoA thiolase	-6.6
Vanillic Acid	PP_1378	alpha-ketoglutarate permease	-1.6
Vanillic Acid	PP_1379	3-carboxy-cis,cis-muconate cycloisomerase	-7.6
Vanillic Acid	PP_1380	3-oxoadipate enol-lactonase 2	-5.3
Vanillic Acid	PP_1615	Transcriptional regulator, LysR family	-2.2	Yes
Vanillic Acid	PP_1616	formaldehyde dehydrogenase, glutathione-dependent	-4.2
Vanillic Acid	PP_3493	Transcriptional regulator, LysR family	-1.4
Vanillic Acid	PP_3494	conserved exported protein of unknown function	-1.5
Vanillic Acid	PP_3736	vanillate O-demethylase oxygenase subunit	-6.4	Yes
Vanillic Acid	PP_3737	vanillate O-demethylase oxidoreductase	-6.0	Yes
Vanillic Acid	PP_3739	porin-like protein	+1.4
Vanillic Acid	PP_3952	3-oxoadipate CoA-transferase subunit A	-6.6
Vanillic Acid	PP_4655	protocatechuate 3,4-dioxygenase alpha chain	-5.1
Vanillic Acid	PP_4656	protocatechuate 3,4-dioxygenase beta chain	-6.8
Vanillin	PP_0621	conserved protein of unknown function	-1.5
Vanillin	PP_0909	conserved exported protein of unknown function	-1.2
Vanillin	PP_0988	glycine dehydrogenase	-1.3
Vanillin	PP_1236	putative Glycine cleavage system transcriptional repressor	-1.3
Vanillin	PP_1292	Cyclic pyranopterin monophosphate synthase accessory protein	-6.0
Vanillin	PP_1294	molybdopterin synthase large subunit	-5.0
Vanillin	PP_1375	transcription regulatory protein (pca regulon)	-6.2
Vanillin	PP_1377	beta-ketoadipyl-CoA thiolase	-7.5
Vanillin	PP_1378	alpha-ketoglutarate permease	-1.5
Vanillin	PP_1379	3-carboxy-cis,cis-muconate cycloisomerase	-7.5
Vanillin	PP_1380	3-oxoadipate enol-lactonase 2	-7.1
Vanillin	PP_1395	Transcriptional regulator, AraC family	-1.4
Vanillin	PP_1615	Transcriptional regulator, LysR family	-2.2
Vanillin	PP_1616	formaldehyde dehydrogenase, glutathione-dependent	-4.9
Vanillin	PP_1617	S-formylglutathione hydrolase / S-lactoylglutathione hydrolase	-1.1
Vanillin	PP_1789	Hydrolase, haloacid dehalogenase-like family	variable
Vanillin	PP_2123	molybdenum::molybdopterin ligase	-5.1
Vanillin	PP_3455	Multidrug efflux RND membrane fusion protein	-2.3
Vanillin	PP_3456	Multidrug resistance protein MexB	-2.4
Vanillin	PP_3493	Transcriptional regulator, LysR family	-1.5
Vanillin	PP_3621	vanillin dehydrogenase, iorA-like component (from data)	-3.6
Vanillin	PP_3622	vanillin dehydrogenase, iorB-like component (from data)	-3.3
Vanillin	PP_3623	vanillin dehydrogenase, cytochrome c component (from data)	-2.1
Vanillin	PP_3736	vanillate O-demethylase oxygenase subunit	-7.2
Vanillin	PP_3737	vanillate O-demethylase oxidoreductase	-6.0
Vanillin	PP_3828	Molybdate-binding periplasmic protein	-4.2
Vanillin	PP_3829	Molybdenum transport system permease protein ModB	-6.9
Vanillin	PP_3830	Molybdenum import ATP-binding protein ModC	-3.2
Vanillin	PP_3952	3-oxoadipate CoA-transferase subunit A	-8.2
Vanillin	PP_4231	putative Xanthine dehydrogenase accessory factor	-2.5
Vanillin	PP_4597	Cyclic pyranopterin monophosphate synthase	-2.9
Vanillin	PP_4622	Hmg transcriptional repressor	-2.1
Vanillin	PP_4655	protocatechuate 3,4-dioxygenase alpha chain	-6.4
Vanillin	PP_4656	protocatechuate 3,4-dioxygenase beta chain	-8.0
Vanillin	PP_4779	AMP nucleosidase	-1.3
Vanillin	PP_5161	putative lysophospholipase	variable
a-Ketoglutaric acid disodium salt hydrate	PP_0386	Sensory box protein	+1.1
a-Ketoglutaric acid disodium salt hydrate	PP_0765	putative adhesin (DUF1302) (from data)	-1.2
a-Ketoglutaric acid disodium salt hydrate	PP_0766	adhesin-associated sorting protein (DUF1329) (from data)	-1.4
a-Ketoglutaric acid disodium salt hydrate	PP_1400	Alpha-ketoglutarate permease	-2.8	Yes
a-Ketoglutaric acid disodium salt hydrate	PP_1401	C4-dicarboxylate transport transcriptional regulatory protein	-2.6	Yes
a-Ketoglutaric acid disodium salt hydrate	PP_1402	C4-dicarboxylate transport sensor protein	-2.6	Yes
a-Ketoglutaric acid disodium salt hydrate	PP_2019	adhesin-associated MmpL efflux pump (from data)	-1.3
a-Ketoglutaric acid disodium salt hydrate	PP_5645	conserved protein of unknown function	+1.2
benzoic acid	PP_0988	glycine dehydrogenase	-1.4
benzoic acid	PP_0997	Sigma-54 dependent transcriptional regulator/sensory box protein	-1.5
benzoic acid	PP_1375	transcription regulatory protein (pca regulon)	-6.8
benzoic acid	PP_1377	beta-ketoadipyl-CoA thiolase	-6.6
benzoic acid	PP_1378	alpha-ketoglutarate permease	-2.0
benzoic acid	PP_1380	3-oxoadipate enol-lactonase 2	-6.4
benzoic acid	PP_3159	BenABC operon transcriptional activator	-3.2
benzoic acid	PP_3161	benzoate 1,2-dioxygenase subunit alpha	-2.9
benzoic acid	PP_3162	benzoate 1,2-dioxygenase subunit beta	-4.0
benzoic acid	PP_3163	benzoate 1,2-dioxygenase electron transfer component	-3.7
benzoic acid	PP_3164	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	-7.9
benzoic acid	PP_3166	catechol 1,2-dioxygenase	-1.0
benzoic acid	PP_3493	Transcriptional regulator, LysR family	-1.8
benzoic acid	PP_3713	Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data)	-1.4
benzoic acid	PP_3714	Muconolactone Delta-isomerase	-6.7
benzoic acid	PP_3715	Muconate cycloisomerase 1	-6.9
benzoic acid	PP_3716	HTH-type transcriptional regulator	-6.0
benzoic acid	PP_3952	3-oxoadipate CoA-transferase subunit A	-8.0
p-Coumaric acid	PP_0428	aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase	-1.8
p-Coumaric acid	PP_0901	DNA-binding response regulator	variable
p-Coumaric acid	PP_1150	putative Membrane protein	-1.1	Yes
p-Coumaric acid	PP_1375	transcription regulatory protein (pca regulon)	-5.4
p-Coumaric acid	PP_1377	beta-ketoadipyl-CoA thiolase	-7.6	Yes
p-Coumaric acid	PP_1378	alpha-ketoglutarate permease	-1.7
p-Coumaric acid	PP_1379	3-carboxy-cis,cis-muconate cycloisomerase	-6.9
p-Coumaric acid	PP_1380	3-oxoadipate enol-lactonase 2	-6.0	Yes
p-Coumaric acid	PP_3356	p-coumarate CoA-ligase (EC 6.2.1.12) (from data)	-6.1	Yes
p-Coumaric acid	PP_3357	p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data)	-6.3	Yes
p-Coumaric acid	PP_3358	hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data)	-5.4
p-Coumaric acid	PP_3537	p-hydroxybenzoate hydroxylase	-4.8	Yes
p-Coumaric acid	PP_3538	transcriptional regulator	-4.7	Yes
p-Coumaric acid	PP_3952	3-oxoadipate CoA-transferase subunit A	-7.6	Yes
p-Coumaric acid	PP_4144	Hydroxyacylglutathione hydrolase	variable
p-Coumaric acid	PP_4655	protocatechuate 3,4-dioxygenase alpha chain	-4.9	Yes
p-Coumaric acid	PP_4656	protocatechuate 3,4-dioxygenase beta chain	-6.8
rac-3-Hydroxypentanoic Acid	PP_0178	putative efflux pump	+1.0
rac-3-Hydroxypentanoic Acid	PP_0428	aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase	-1.0
rac-3-Hydroxypentanoic Acid	PP_0763	Medium-chain-fatty-acid CoA ligase	-1.1
rac-3-Hydroxypentanoic Acid	PP_1615	Transcriptional regulator, LysR family	-3.0
rac-3-Hydroxypentanoic Acid	PP_1616	formaldehyde dehydrogenase, glutathione-dependent	-4.0
rac-3-Hydroxypentanoic Acid	PP_1617	S-formylglutathione hydrolase / S-lactoylglutathione hydrolase	-3.2
rac-3-Hydroxypentanoic Acid	PP_2671	Sensor histidine kinase	-1.1
rac-3-Hydroxypentanoic Acid	PP_2672	Transcriptional activator protein ExaE	-1.5
rac-3-Hydroxypentanoic Acid	PP_2674	quinoprotein ethanol dehydrogenase	-1.4
rac-3-Hydroxypentanoic Acid	PP_3121	transcriptional regulator, LysR family	-3.4
rac-3-Hydroxypentanoic Acid	PP_3122	acetoacetyl CoA-transferase (subunit A)	-4.0
rac-3-Hydroxypentanoic Acid	PP_3123	acetoacetyl CoA-transferase (subunit B)	-4.9