Specific Phenotypes for Pseudomonas sp. S08-1 in carbon source experiments

Condition Gene Description Fitness Cons.
Sodium acetate OH686_11185 Ferric iron ABC transporter, iron-binding protein -1.3  
Sodium octanoate OH686_00620 Glutathione S-transferase, unnamed subgroup -1.3  
Sodium octanoate OH686_01620 UTP--glucose-1-phosphate uridylyltransferase +4.1  
Sodium octanoate OH686_02685 Positive regulator of CheA protein activity (CheW) variable  
Sodium octanoate OH686_02700 Flagellar motor rotation protein MotB +1.0  
Sodium octanoate OH686_02730 RNA polymerase sigma factor for flagellar operon +1.7  
Sodium octanoate OH686_02755 flagellar biosynthetic protein FlhB +2.2  
Sodium octanoate OH686_02815 flagellar export protein FliJ variable  
Sodium octanoate OH686_02875 Flagellar cap protein FliD +2.1  
Sodium octanoate OH686_02895 UDP-glucose 4-epimerase variable  
Sodium octanoate OH686_02900 SAM-dependent methyltransferase variable  
Sodium octanoate OH686_02905 dTDP-4-dehydrorhamnose 3,5-epimerase +1.7  
Sodium octanoate OH686_02915 glucose-1-phosphate cytidylyltransferase +1.8  
Sodium octanoate OH686_02920 hypothetical protein variable  
Sodium octanoate OH686_02925 flagellar hook-associated protein 3 +2.2  
Sodium octanoate OH686_02930 flagellar hook-associated protein FlgK +1.9  
Sodium octanoate OH686_02935 flagellar rod assembly protein/muramidase FlgJ +1.3  
Sodium octanoate OH686_02990 hypothetical protein +1.6  
Sodium octanoate OH686_03505 Putative sterol carrier protein variable  
Sodium octanoate OH686_04205 OmpA family protein -2.2  
Sodium octanoate OH686_04210 putative lipoprotein variable Yes
Sodium octanoate OH686_04270 aminopeptidase N variable Yes
Sodium octanoate OH686_04455 Probable type IV pilus assembly FimV-related transmembrane protein variable  
Sodium octanoate OH686_04540 tRNA-Ala +1.6  
Sodium octanoate OH686_04570 Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system +1.0  
Sodium octanoate OH686_04770 Outer membrane lipoprotein -2.6  
Sodium octanoate OH686_04870 Conserved secreted protein variable  
Sodium octanoate OH686_05230 ATPase associated with various cellular activities variable  
Sodium octanoate OH686_05525 Threonine efflux protein variable  
Sodium octanoate OH686_07845 Transcriptional regulator, MerR family, associated with photolyase variable  
Sodium octanoate OH686_08205 Small-conductance mechanosensitive channel variable  
Sodium octanoate OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -1.5  
Sodium octanoate OH686_09645 hypothetical protein' product='hypothetical protein +2.3  
Sodium octanoate OH686_09840 putative membrane protein -1.4  
Sodium octanoate OH686_09895 Acyl carrier protein +1.4  
Sodium octanoate OH686_09910 Glycosyl transferase variable  
Sodium octanoate OH686_09970 3-oxoacyl-[ACP] reductase FadG2, NOT +1.1  
Sodium octanoate OH686_10110 Polyhydroxyalkanoic acid synthase +1.2 Yes
Sodium octanoate OH686_11220 Z-ring-associated protein ZapA variable  
Sodium octanoate OH686_11505 agmatine deiminase variable  
Sodium octanoate OH686_11975 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase +1.4  
Sodium octanoate OH686_12000 hypothetical protein +2.1  
Sodium octanoate OH686_12005 hypothetical protein +1.4  
Sodium octanoate OH686_12020 hypothetical protein +3.1  
Sodium octanoate OH686_12125 Gate supefamily SpmA/SpmB domains protein -1.9 Yes
Sodium octanoate OH686_12535 TPR domain protein +1.2  
Sodium octanoate OH686_13965 Cytochrome c family protein variable  
Sodium octanoate OH686_14190 hypothetical protein +1.3  
Sodium octanoate OH686_14345 arginine-ornithine antiporter -1.5  
Sodium octanoate OH686_14430 hypothetical protein +2.6  
Sodium octanoate OH686_15795 putative lipoprotein +1.7  
Sodium octanoate OH686_15820 Esterase YqiA -2.4 Yes
Sodium octanoate OH686_16040 Transcriptional regulator, AcrR family variable Yes
Sodium octanoate OH686_16050 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) variable  
Sodium octanoate OH686_16055 Multidrug efflux system, outer membrane factor lipoprotein -2.3  
Sodium octanoate OH686_16415 Multicopper polyphenol oxidase variable Yes
Sodium octanoate OH686_16530 1,6-anhydro-N-acetylmuramyl-L-alanine amidase variable  
Sodium octanoate OH686_16720 CDS -2.2  
Sodium octanoate OH686_17270 Uncharacterized protein.5 -1.7  
Sodium octanoate OH686_17780 ATP-dependent RNA helicase RhlB -1.9  
Sodium octanoate OH686_18195 DNA mismatch repair protein MutS +1.4  
Sodium octanoate OH686_19065 putative lipoprotein -3.3 Yes
Sodium octanoate OH686_19710 Tail-specific protease precursor variable  
Sodium octanoate OH686_20900 hypothetical protein variable  
Sodium octanoate OH686_22205 putative lipoprotein +1.8  
Sodium octanoate OH686_22700 queuine synthase -1.5  
Sodium octanoate OH686_22755 hypothetical protein +2.2  
Sodium octanoate OH686_22760 dTDP-glucose 4,6-dehydratase -1.7  
Sodium octanoate OH686_22770 O antigen biosynthesis rhamnosyltransferase rfbN +1.9  
Sodium octanoate OH686_22780 hypothetical protein +1.7  
Sodium octanoate OH686_22790 hypothetical protein +1.8  
Sodium octanoate OH686_22800 hypothetical protein +1.2  
Sodium octanoate OH686_23465 Transcriptional regulator, HxlR family variable  
Trisodium citrate dihydrate OH686_01055 Ferrichrome-iron receptor -1.3  
Trisodium citrate dihydrate OH686_01070 siderophore-iron reductase FhuF -4.2  
Trisodium citrate dihydrate OH686_01075 Ferric hydroxamate ABC transporter, permease component FhuB -4.1  
Trisodium citrate dihydrate OH686_01080 hypothetical protein -3.9  
Trisodium citrate dihydrate OH686_01085 Ferric hydroxamate ABC transporter, ATP-binding protein FhuC -2.9