Specific Phenotypes for Paraburkholderia sabiae LMG 24235 in carbon source experiments

Condition Gene Description Fitness Cons.
2-Deoxy-D-Ribose QEN71_RS20190 deoxyribose-phosphate aldolase -3.2  
2-Deoxy-D-Ribose QEN71_RS20195 aldehyde dehydrogenase family protein -2.9 Yes
2-Deoxy-D-Ribose QEN71_RS20200 RbsD/FucU family protein -2.9 Yes
2-Deoxy-D-Ribose QEN71_RS20205 ribokinase -2.3 Yes
2-Deoxy-D-Ribose QEN71_RS23765 acetate--CoA ligase -1.8 Yes
D,L-Malic Acid QEN71_RS04315 hypothetical protein -1.8  
D-Fructose QEN71_RS13095 ABC transporter permease -2.9 Yes
D-Glucose QEN71_RS01580 GntR family transcriptional regulator +1.5  
D-Glucose QEN71_RS02910 GntR family transcriptional regulator +1.6  
D-Glucose QEN71_RS03325 6-phosphogluconolactonase -2.6 Yes
D-Glucose QEN71_RS03335 ABC transporter substrate-binding protein -3.9 Yes
D-Glucose QEN71_RS03340 sugar ABC transporter permease -3.7 Yes
D-Glucose QEN71_RS03345 carbohydrate ABC transporter permease -3.7 Yes
D-Glucose QEN71_RS03350 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -4.1 Yes
D-Sorbitol QEN71_RS02430 pyruvate kinase -1.5  
D-Sorbitol QEN71_RS02585 L-iditol 2-dehydrogenase -4.3 Yes
D-Sorbitol QEN71_RS02590 sugar ABC transporter substrate-binding protein -4.1 Yes
D-Sorbitol QEN71_RS02595 sugar ABC transporter permease -3.9 Yes
D-Sorbitol QEN71_RS02600 carbohydrate ABC transporter permease -4.2 Yes
D-Sorbitol QEN71_RS02610 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -5.1 Yes
D-Sorbitol QEN71_RS07270 LacI family DNA-binding transcriptional regulator -2.7  
D-Sorbitol QEN71_RS09775 substrate-binding domain-containing protein +2.0  
D-Sorbitol QEN71_RS11405 FadR/GntR family transcriptional regulator -1.1  
D-Sorbitol QEN71_RS15820 Fe(3+)-hydroxamate ABC transporter permease FhuB -1.6  
D-Sorbitol QEN71_RS17265 IclR family transcriptional regulator -1.7  
D-Sorbitol QEN71_RS27850 MarC family protein -1.3  
D-Sorbitol QEN71_RS38360 transcriptional regulator NanR -1.9  
D-Xylose QEN71_RS00545 LacI family DNA-binding transcriptional regulator +1.2  
D-Xylose QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein -1.4  
D-Xylose QEN71_RS02625 xylulokinase -2.3 Yes
D-Xylose QEN71_RS07270 LacI family DNA-binding transcriptional regulator +3.4  
D-Xylose QEN71_RS11405 FadR/GntR family transcriptional regulator +1.5  
D-Xylose QEN71_RS16805 FadR/GntR family transcriptional regulator +1.9  
D-Xylose QEN71_RS17265 IclR family transcriptional regulator +2.3  
D-Xylose QEN71_RS17740 DUF3416 domain-containing protein -2.1  
D-Xylose QEN71_RS18405 porin -1.3  
D-Xylose QEN71_RS23555 MFS transporter -1.4  
D-Xylose QEN71_RS25795 YqgE/AlgH family protein -1.2  
D-Xylose QEN71_RS25860 sugar ABC transporter permease -4.8 Yes
D-Xylose QEN71_RS25865 D-xylose ABC transporter ATP-binding protein -6.0 Yes
D-Xylose QEN71_RS25880 DNA-binding transcriptional regulator -5.0 Yes
D-Xylose QEN71_RS25990 ATP-binding protein -1.9  
D-Xylose QEN71_RS26170 EAL domain-containing protein -1.2  
D-Xylose QEN71_RS33920 XRE family transcriptional regulator -2.3  
D-Xylose QEN71_RS37705 LacI family DNA-binding transcriptional regulator +1.2  
Fumaric acid QEN71_RS25230 uroporphyrinogen-III C-methyltransferase -1.9  
L-Aspartic Acid QEN71_RS23840 hemin uptake protein HemP -1.4  
L-Histidine QEN71_RS01805 formyltetrahydrofolate deformylase -2.0  
L-Histidine QEN71_RS07730 ABC transporter permease subunit -1.7  
L-Histidine QEN71_RS07735 ABC transporter permease subunit -1.3 Yes
L-Histidine QEN71_RS19725 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -2.4  
L-Histidine QEN71_RS21240 L,D-transpeptidase +2.7  
L-Histidine QEN71_RS23485 N-formylglutamate deformylase -3.5 Yes
L-Histidine QEN71_RS23490 formimidoylglutamate deiminase -3.9 Yes
L-Histidine QEN71_RS23495 imidazolonepropionase -4.0 Yes
L-Histidine QEN71_RS26925 MurR/RpiR family transcriptional regulator +1.3  
L-Histidine QEN71_RS28680 TraB/GumN family protein +1.5  
L-Histidine QEN71_RS41360 Lrp/AsnC family transcriptional regulator +1.6  
L-Leucine QEN71_RS01065 glyoxylate/hydroxypyruvate reductase A -1.7  
L-Leucine QEN71_RS02410 branched-chain amino acid transaminase -1.1 Yes
L-Leucine QEN71_RS06270 isocitrate lyase -3.5 Yes
L-Leucine QEN71_RS12380 enoyl-CoA hydratase/isomerase family protein -1.2  
L-Leucine QEN71_RS12855 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -3.7 Yes
L-Leucine QEN71_RS12870 isovaleryl-CoA dehydrogenase -3.7 Yes
L-Leucine QEN71_RS29685 indolepyruvate ferredoxin oxidoreductase family protein -3.1 Yes
L-Leucine QEN71_RS39745 LysR family transcriptional regulator -2.4  
L-Rhamnose monohydrate QEN71_RS12600 rhamnose ABC transporter substrate-binding protein -3.4 Yes
L-Rhamnose monohydrate QEN71_RS12605 ABC transporter permease -4.9 Yes
L-Rhamnose monohydrate QEN71_RS12620 amidohydrolase family protein -4.9  
L-Rhamnose monohydrate QEN71_RS12625 L-rhamnose mutarotase -2.3 Yes
L-Rhamnose monohydrate QEN71_RS12630 LysR family transcriptional regulator -4.9 Yes
L-Rhamnose monohydrate QEN71_RS12635 SDR family NAD(P)-dependent oxidoreductase -4.5 Yes
L-Rhamnose monohydrate QEN71_RS12640 L-rhamnonate dehydratase -4.3 Yes
L-Rhamnose monohydrate QEN71_RS12645 MFS transporter -3.6  
L-Rhamnose monohydrate QEN71_RS12650 SDR family NAD(P)-dependent oxidoreductase -2.5 Yes
L-Rhamnose monohydrate QEN71_RS30410 LysR family transcriptional regulator -4.7  
Sodium D,L-Lactate QEN71_RS10145 lactate utilization protein C -1.5 Yes
Sodium D,L-Lactate QEN71_RS10150 LutB/LldF family L-lactate oxidation iron-sulfur protein -1.7 Yes
casamino acids QEN71_RS22210 peptidoglycan editing factor PgeF -1.4 Yes