| Condition | Gene | Description | Fitness | Cons. |
|---|
| (+) Sodium L-ascorbate | DY961_RS00155 | MarR family transcriptional regulator | -1.9 | |
| (+) Sodium L-ascorbate | DY961_RS01970 | Na(+)-translocating NADH-quinone reductase subunit A | -3.6 | |
| (+) Sodium L-ascorbate | DY961_RS01985 | NADH:ubiquinone reductase (Na(+)-transporting) subunit D | -3.2 | Yes |
| (+) Sodium L-ascorbate | DY961_RS02000 | FAD:protein FMN transferase | -3.7 | |
| (+) Sodium L-ascorbate | DY961_RS03000 | sensor histidine kinase | +6.9 | Yes |
| (+) Sodium L-ascorbate | DY961_RS04200 | Bax inhibitor-1/YccA family protein | -1.2 | |
| (+) Sodium L-ascorbate | DY961_RS07620 | Dps family protein | -1.3 | |
| (+) Sodium L-ascorbate | DY961_RS07770 | nucleoside triphosphate pyrophosphohydrolase | -1.1 | |
| (+) Sodium L-ascorbate | DY961_RS07875 | 30S ribosomal protein S12 methylthiotransferase RimO | -1.6 | |
| (+) Sodium L-ascorbate | DY961_RS07975 | N-succinylarginine dihydrolase | -1.7 | |
| (+) Sodium L-ascorbate | DY961_RS08245 | thioredoxin-disulfide reductase | +1.3 | |
| (+) Sodium L-ascorbate | DY961_RS08625 | carboxy-S-adenosyl-L-methionine synthase CmoA | -1.5 | Yes |
| (+) Sodium L-ascorbate | DY961_RS08695 | L-aspartate oxidase | -1.3 | |
| (+) Sodium L-ascorbate | DY961_RS09355 | tRNA glutamyl-Q(34) synthetase GluQRS | -1.9 | |
| (+) Sodium L-ascorbate | DY961_RS09605 | FCD domain-containing protein | -2.5 | |
| (+) Sodium L-ascorbate | DY961_RS09985 | DUF2333 family protein | -1.6 | |
| (+) Sodium L-ascorbate | DY961_RS10005 | protein-disulfide reductase DsbD | +2.7 | |
| (+) Sodium L-ascorbate | DY961_RS11605 | ABC transporter ATP-binding protein | -1.8 | |
| (+) Sodium L-ascorbate | DY961_RS11610 | ABC transporter substrate-binding protein | +2.1 | Yes |
| (+) Sodium L-ascorbate | DY961_RS11740 | ADP compounds hydrolase NudE | -2.1 | |
| (+) Sodium L-ascorbate | DY961_RS12095 | DedA family protein | +2.8 | |
| (+) Sodium L-ascorbate | DY961_RS12245 | hypothetical protein | +1.1 | |
| (+) Sodium L-ascorbate | DY961_RS12655 | heme-binding protein | -1.2 | |
| (+) Sodium L-ascorbate | DY961_RS12790 | LrgB family protein | -1.8 | Yes |
| (+) Sodium L-ascorbate | DY961_RS13445 | sodium:proton antiporter | +1.9 | Yes |
| (+) Sodium L-ascorbate | DY961_RS13835 | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | -1.3 | Yes |
| (+) Sodium L-ascorbate | DY961_RS14230 | HlyC/CorC family transporter | +1.5 | |
| (+) Sodium L-ascorbate | DY961_RS14830 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | -1.1 | |
| (+) Sodium L-ascorbate | DY961_RS14835 | S-formylglutathione hydrolase | -1.4 | |
| (+) Sodium L-ascorbate | DY961_RS15265 | alginate O-acetyltransferase | -1.9 | |
| (+) Sodium L-ascorbate | DY961_RS15640 | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | -1.1 | |
| (+) Sodium L-ascorbate | DY961_RS16050 | alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ | +1.4 | |
| (+) Sodium L-ascorbate | DY961_RS17295 | tripartite tricarboxylate transporter TctB family protein | -2.5 | Yes |
| (+) Sodium L-ascorbate | DY961_RS17305 | MFS transporter | -2.8 | Yes |
| (+) Sodium L-ascorbate | DY961_RS17330 | L-lyxonate dehydratase | -3.3 | Yes |
| (+) Sodium L-ascorbate | DY961_RS18700 | aminomethyl-transferring glycine dehydrogenase | -1.8 | |
| (+) Sodium L-ascorbate | DY961_RS19030 | sensor histidine kinase | +2.9 | Yes |
| (+) Sodium L-ascorbate | DY961_RS20795 | hydroxyacylglutathione hydrolase | -3.5 | |
| (+) Sodium L-ascorbate | DY961_RS21400 | OprD family porin | +3.2 | Yes |
| (+) Sodium L-ascorbate | DY961_RS21620 | threonine ammonia-lyase biosynthetic | +1.2 | |
| (+) Sodium L-ascorbate | DY961_RS21670 | sulfite exporter TauE/SafE family protein | +5.4 | Yes |
| (+) Sodium L-ascorbate | DY961_RS22850 | YqaE/Pmp3 family membrane protein | +1.4 | |
| (+) Sodium L-ascorbate | DY961_RS22855 | hypothetical protein | +1.3 | |
| (+) Sodium L-ascorbate | DY961_RS23215 | adenosylmethionine decarboxylase | -1.5 | Yes |
| (+) Sodium L-ascorbate | DY961_RS23350 | ferredoxin--NADP reductase | -2.9 | Yes |
| (+) Sodium L-ascorbate | DY961_RS24150 | RNase adapter RapZ | +2.4 | |
| (+) Sodium L-ascorbate | DY961_RS24475 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | +1.4 | |
| (+) Sodium L-ascorbate | DY961_RS25335 | hypothetical protein | -1.3 | |
| (+) Sodium L-ascorbate | DY961_RS25945 | Tim44 domain-containing protein | -2.1 | |
| (+) Sodium L-ascorbate | DY961_RS26620 | type VI secretion system-associated regulator TagR | -1.1 | |
| (+) Sodium L-ascorbate | DY961_RS26625 | type IV secretion associated ABC transporter permease TagS | -1.5 | |
| (+) Sodium L-ascorbate | DY961_RS27080 | LysR family transcriptional regulator | +1.2 | |
| (+) Sodium L-ascorbate | DY961_RS27100 | helix-turn-helix transcriptional regulator | -1.2 | Yes |
| (+) Sodium L-ascorbate | DY961_RS27105 | gamma-glutamyltransferase family protein | -2.4 | Yes |
| (+) Sodium L-ascorbate | DY961_RS27615 | zinc-dependent peptidase | +1.6 | |
| (+) Sodium L-ascorbate | DY961_RS27690 | cobalamin-binding protein | +1.2 | |
| (+) Sodium L-ascorbate | DY961_RS29400 | MFS transporter | +1.4 | |
| (+) Sodium L-ascorbate | DY961_RS29415 | catalase KatA | -2.3 | Yes |
| 2-Deoxy-D-Ribose | DY961_RS16130 | pyrroloquinoline quinone biosynthesis protein PqqE | -1.8 | |
| 2-Deoxy-D-Ribose | DY961_RS19215 | bifunctional isocitrate dehydrogenase kinase/phosphatase | -1.5 | |
| 2-Deoxy-D-Ribose | DY961_RS27275 | NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta | -1.1 | |
| 2-Deoxy-D-Ribose | DY961_RS28930 | quinoprotein ethanol dehydrogenase | -1.5 | Yes |
| 2-Deoxy-D-Ribose | DY961_RS29400 | MFS transporter | -1.5 | |
| 4-Aminobutyric acid | DY961_RS14985 | helix-turn-helix transcriptional regulator | +1.2 | Yes |
| 4-Aminobutyric acid | DY961_RS23025 | alpha/beta hydrolase family protein | +1.2 | |
| 4-Aminobutyric acid | DY961_RS23030 | sensor histidine kinase | -2.1 | Yes |
| 4-Aminobutyric acid | DY961_RS23040 | ABC transporter substrate-binding protein | -1.4 | Yes |
| 4-Aminobutyric acid | DY961_RS23045 | polyamine ABC transporter ATP-binding protein | -2.3 | Yes |
| 4-Aminobutyric acid | DY961_RS23050 | ABC transporter substrate-binding protein | -2.2 | Yes |
| 4-Aminobutyric acid | DY961_RS23055 | ABC transporter permease | -2.4 | Yes |
| 4-Aminobutyric acid | DY961_RS23060 | ABC transporter permease | -2.7 | Yes |
| 4-Aminobutyric acid | DY961_RS26930 | beta-alanine degradation protein BauB | +2.8 | Yes |
| 5-Aminovaleric acid | DY961_RS01605 | NAD-glutamate dehydrogenase GdhB | -1.5 | Yes |
| 5-Aminovaleric acid | DY961_RS06465 | Yip1 family protein | -1.3 | Yes |
| 5-Aminovaleric acid | DY961_RS07070 | DUF5064 family protein | -1.1 | |
| 5-Aminovaleric acid | DY961_RS08235 | threonine dehydratase | +2.1 | |
| 5-Aminovaleric acid | DY961_RS08310 | DUF3565 domain-containing protein | +1.7 | |
| 5-Aminovaleric acid | DY961_RS10910 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | -1.1 | |
| 5-Aminovaleric acid | DY961_RS11990 | Xaa-Pro aminopeptidase | -1.9 | |
| 5-Aminovaleric acid | DY961_RS13275 | PhoH family protein | -1.5 | |
| 5-Aminovaleric acid | DY961_RS19215 | bifunctional isocitrate dehydrogenase kinase/phosphatase | -2.2 | Yes |
| 5-Aminovaleric acid | DY961_RS22220 | CaiB/BaiF CoA-transferase family protein | -2.8 | Yes |
| 5-Aminovaleric acid | DY961_RS22225 | acyl-CoA dehydrogenase | -3.1 | Yes |
| 5-Aminovaleric acid | DY961_RS22230 | LysR family transcriptional regulator | -3.2 | Yes |
| 5-Aminovaleric acid | DY961_RS22465 | 5-oxoprolinase subunit PxpA | -1.6 | Yes |
| 5-Aminovaleric acid | DY961_RS22665 | aspartate aminotransferase family protein | -1.3 | Yes |
| 5-Aminovaleric acid | DY961_RS22670 | type 1 glutamine amidotransferase | -1.3 | Yes |
| 5-Aminovaleric acid | DY961_RS22695 | XRE family transcriptional regulator | +2.3 | |
| 5-Aminovaleric acid | DY961_RS23030 | sensor histidine kinase | -2.9 | Yes |
| 5-Aminovaleric acid | DY961_RS23045 | polyamine ABC transporter ATP-binding protein | -2.2 | Yes |
| 5-Aminovaleric acid | DY961_RS23050 | ABC transporter substrate-binding protein | -3.0 | Yes |
| 5-Aminovaleric acid | DY961_RS23055 | ABC transporter permease | -2.5 | Yes |
| 5-Aminovaleric acid | DY961_RS23060 | ABC transporter permease | -2.8 | Yes |
| 5-Aminovaleric acid | DY961_RS23565 | ATP-binding protein | -1.3 | Yes |
| 5-Aminovaleric acid | DY961_RS24540 | SDR family oxidoreductase | -2.0 | Yes |
| 5-Aminovaleric acid | DY961_RS25025 | two-component response regulator PprB | +1.6 | |
| Adipic acid | DY961_RS01525 | aminopeptidase N | -1.1 | |
| Adipic acid | DY961_RS02190 | TetR/AcrR family transcriptional regulator | +2.8 | Yes |
| Adipic acid | DY961_RS02195 | radical SAM protein | +1.7 | Yes |
| Adipic acid | DY961_RS02565 | atu genes transcriptional repressor AtuR | -1.6 | Yes |
| Adipic acid | DY961_RS03680 | VWA domain-containing protein | -1.1 | Yes |
| Adipic acid | DY961_RS06285 | TetR/AcrR family transcriptional regulator | -1.5 | |
| Adipic acid | DY961_RS07085 | branched-chain amino acid ABC transporter substrate-binding protein | -2.0 | |
| Adipic acid | DY961_RS07090 | high-affinity branched-chain amino acid ABC transporter permease LivH | -1.5 | Yes |
| Adipic acid | DY961_RS07095 | high-affinity branched-chain amino acid ABC transporter permease LivM | -1.4 | Yes |
| Adipic acid | DY961_RS07350 | SDR family oxidoreductase | -2.2 | Yes |
| Adipic acid | DY961_RS07355 | acyl-CoA dehydrogenase family protein | -2.5 | Yes |
| Adipic acid | DY961_RS07360 | enoyl-CoA hydratase/isomerase family protein | -2.1 | Yes |
| Adipic acid | DY961_RS07365 | acyl-CoA dehydrogenase family protein | -3.0 | Yes |
| Adipic acid | DY961_RS07380 | MaoC/PaaZ C-terminal domain-containing protein | -1.9 | Yes |
| Adipic acid | DY961_RS07385 | acetate--CoA ligase family protein | -3.0 | Yes |
| Adipic acid | DY961_RS07390 | thiolase | -1.7 | Yes |
| Adipic acid | DY961_RS07395 | OB-fold domain-containing protein | -4.0 | |
| Adipic acid | DY961_RS13395 | LysR family transcriptional regulator | -1.1 | Yes |
| Adipic acid | DY961_RS19790 | 3-hydroxyacyl-CoA dehydrogenase | -1.3 | |
| Adipic acid | DY961_RS19805 | acyl-CoA dehydrogenase family protein | -3.3 | Yes |
| Adipic acid | DY961_RS19860 | selenide water dikinase SelD | -1.4 | |
| Adipic acid | DY961_RS20765 | ABC transporter ATP-binding protein | -1.5 | |
| Adipic acid | DY961_RS20775 | microcin C ABC transporter permease YejB | -1.4 | |
| Adipic acid | DY961_RS23565 | ATP-binding protein | -1.6 | Yes |
| Adipic acid | DY961_RS25450 | tryptophan permease | -1.4 | |
| Adipic acid | DY961_RS25715 | sigma-54-dependent response regulator transcription factor AlgB | +2.0 | Yes |
| Adipic acid | DY961_RS26270 | hypothetical protein | +1.5 | |
| Adipic acid | DY961_RS27060 | IclR family transcriptional regulator C-terminal domain-containing protein | -3.0 | Yes |
| Adipic acid | DY961_RS27400 | CoA transferase subunit A | -2.9 | Yes |
| Adipic acid | DY961_RS27405 | CoA-transferase subunit beta | -3.3 | |
| Adipic acid | DY961_RS27415 | MFS family transporter | -1.7 | Yes |
| Adipic acid | DY961_RS28055 | nucleotide 5'-monophosphate nucleosidase PpnN | -2.2 | Yes |
| Adipic acid | DY961_RS28960 | amino acid permease | +1.2 | |
| Beta-alanine | DY961_RS00080 | glutamine synthetase family protein | +1.5 | Yes |
| Beta-alanine | DY961_RS00915 | PHP domain-containing protein | -1.4 | |
| Beta-alanine | DY961_RS01215 | excinuclease ABC subunit UvrB | -1.7 | Yes |
| Beta-alanine | DY961_RS03960 | AI-2E family transporter | -1.4 | |
| Beta-alanine | DY961_RS04105 | NADP-dependent isocitrate dehydrogenase | +1.3 | Yes |
| Beta-alanine | DY961_RS04955 | aldo/keto reductase | -1.8 | |
| Beta-alanine | DY961_RS04960 | LysR family transcriptional regulator | -1.6 | Yes |
| Beta-alanine | DY961_RS05480 | APC family permease | +1.2 | Yes |
| Beta-alanine | DY961_RS05485 | helix-turn-helix transcriptional regulator | +2.4 | Yes |
| Beta-alanine | DY961_RS07780 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | +1.7 | Yes |
| Beta-alanine | DY961_RS07975 | N-succinylarginine dihydrolase | -2.1 | |
| Beta-alanine | DY961_RS08020 | ABC transporter permease | +1.7 | Yes |
| Beta-alanine | DY961_RS08030 | ABC transporter substrate-binding protein | +1.9 | Yes |
| Beta-alanine | DY961_RS08310 | DUF3565 domain-containing protein | -1.3 | |
| Beta-alanine | DY961_RS08545 | sulfite exporter TauE/SafE family protein | +2.1 | Yes |
| Beta-alanine | DY961_RS08550 | amino acid permease | +2.2 | Yes |
| Beta-alanine | DY961_RS08555 | hypothetical protein | -2.9 | |
| Beta-alanine | DY961_RS08560 | transglycosylase domain-containing protein | +1.6 | Yes |
| Beta-alanine | DY961_RS08695 | L-aspartate oxidase | -2.7 | Yes |
| Beta-alanine | DY961_RS09220 | DUF4124 domain-containing protein | -1.6 | |
| Beta-alanine | DY961_RS09355 | tRNA glutamyl-Q(34) synthetase GluQRS | +1.7 | Yes |
| Beta-alanine | DY961_RS09975 | translation initiation factor Sui1 | -1.5 | |
| Beta-alanine | DY961_RS10540 | tRNA epoxyqueuosine(34) reductase QueG | +2.2 | Yes |
| Beta-alanine | DY961_RS11580 | oxidative damage protection protein | -2.3 | |
| Beta-alanine | DY961_RS12095 | DedA family protein | +1.7 | Yes |
| Beta-alanine | DY961_RS12400 | alanine racemase | -3.6 | Yes |
| Beta-alanine | DY961_RS12405 | RidA family protein | -2.1 | |
| Beta-alanine | DY961_RS12420 | YnbE family lipoprotein | -1.5 | |
| Beta-alanine | DY961_RS13030 | Lrp/AsnC family transcriptional regulator | -1.3 | Yes |
| Beta-alanine | DY961_RS13060 | transporter substrate-binding domain-containing protein | -2.1 | Yes |
| Beta-alanine | DY961_RS14420 | LysR family transcriptional regulator | +2.4 | Yes |
| Beta-alanine | DY961_RS14425 | GMC family oxidoreductase | +1.3 | |
| Beta-alanine | DY961_RS14430 | MFS transporter | +1.7 | Yes |
| Beta-alanine | DY961_RS15055 | alpha/beta hydrolase | -1.3 | |
| Beta-alanine | DY961_RS15210 | PTS fructose-like transporter subunit IIB | -2.3 | Yes |
| Beta-alanine | DY961_RS15550 | EamA family transporter RarD | -2.1 | Yes |
| Beta-alanine | DY961_RS19145 | XRE family transcriptional regulator | +1.9 | Yes |
| Beta-alanine | DY961_RS19215 | bifunctional isocitrate dehydrogenase kinase/phosphatase | -2.9 | Yes |
| Beta-alanine | DY961_RS19600 | branched-chain amino acid transport system II carrier protein | +1.5 | |
| Beta-alanine | DY961_RS21950 | YggS family pyridoxal phosphate-dependent enzyme | -2.4 | Yes |
| Beta-alanine | DY961_RS23025 | alpha/beta hydrolase family protein | -1.7 | Yes |
| Beta-alanine | DY961_RS24485 | Nudix family hydrolase | -2.2 | |
| Beta-alanine | DY961_RS25430 | YeeE/YedE family protein | +1.8 | Yes |
| Beta-alanine | DY961_RS26920 | GABA permease | -2.1 | Yes |
| Beta-alanine | DY961_RS26925 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | -3.4 | Yes |
| Beta-alanine | DY961_RS26930 | beta-alanine degradation protein BauB | -1.7 | Yes |
| Beta-alanine | DY961_RS26935 | beta-alanine--pyruvate aminotransferase | -3.2 | Yes |
| Beta-alanine | DY961_RS26940 | HTH-type transcriptional activator BauR | -3.4 | Yes |
| Beta-alanine | DY961_RS26955 | ABC transporter ATP-binding protein | -1.6 | |
| Beta-alanine | DY961_RS27265 | Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha | -2.3 | Yes |
| Beta-alanine | DY961_RS27270 | NAD(P) transhydrogenase subunit alpha | -2.3 | Yes |
| Beta-alanine | DY961_RS27275 | NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta | -1.9 | Yes |
| Beta-alanine | DY961_RS28615 | FAD-dependent oxidoreductase | -3.8 | Yes |
| Beta-alanine | DY961_RS28875 | branched-chain amino acid transport system II carrier protein | +2.7 | Yes |
| Betaine hydrochloride | DY961_RS01810 | molybdenum cofactor guanylyltransferase MobA | -1.5 | Yes |
| Betaine hydrochloride | DY961_RS05375 | GTP 3' 8-cyclase MoaA | -1.8 | |
| Betaine hydrochloride | DY961_RS11760 | formate dehydrogenase accessory sulfurtransferase FdhD | -1.4 | Yes |
| Betaine hydrochloride | DY961_RS11765 | FdhF/YdeP family oxidoreductase | -1.3 | Yes |
| Betaine hydrochloride | DY961_RS11990 | Xaa-Pro aminopeptidase | -1.5 | |
| Betaine hydrochloride | DY961_RS12345 | choline BCCT transporter BetT | -1.6 | Yes |
| Betaine hydrochloride | DY961_RS14835 | S-formylglutathione hydrolase | +1.4 | |
| Betaine hydrochloride | DY961_RS25145 | choline ABC transporter ATP-binding protein | -2.2 | Yes |
| Betaine hydrochloride | DY961_RS25150 | choline ABC transporter permease subunit | -2.6 | Yes |
| Betaine hydrochloride | DY961_RS25155 | choline ABC transporter substrate-binding protein | -1.7 | Yes |
| Betaine hydrochloride | DY961_RS25165 | GlxA family transcriptional regulator | -3.0 | Yes |
| Betaine hydrochloride | DY961_RS25240 | DUF1348 family protein | +1.3 | Yes |
| Betaine hydrochloride | DY961_RS25245 | dipeptidase | -3.4 | Yes |
| Betaine hydrochloride | DY961_RS25250 | DUF5943 domain-containing protein | -2.9 | Yes |
| Betaine hydrochloride | DY961_RS25255 | dimethylglycine demethylation protein DgcA | -2.8 | Yes |
| Betaine hydrochloride | DY961_RS25260 | dimethylglycine demethylation protein DgcB | -3.3 | Yes |
| Betaine hydrochloride | DY961_RS25270 | electron transfer flavoprotein subunit beta/FixA family protein | -3.0 | Yes |
| Betaine hydrochloride | DY961_RS25315 | glycine-betaine demethylase subunit GbcA | -2.6 | Yes |
| Betaine hydrochloride | DY961_RS25320 | glycine-betaine demethylase subunit GbcB | -2.8 | Yes |
| Betaine hydrochloride | DY961_RS25350 | sarcosine oxidase subunit beta | -2.6 | Yes |
| Betaine hydrochloride | DY961_RS25355 | sarcosine oxidase subunit delta family protein | -2.9 | Yes |
| Betaine hydrochloride | DY961_RS25360 | sarcosine oxidase subunit alpha | -3.1 | Yes |
| Betaine hydrochloride | DY961_RS25365 | sarcosine oxidase subunit gamma family protein | -2.4 | Yes |
| Betaine hydrochloride | DY961_RS25375 | formaldehyde dehydrogenase glutathione-independent | -1.2 | Yes |
| Betaine hydrochloride | DY961_RS25775 | homoserine kinase | -2.9 | Yes |
| Carnitine Hydrochloride | DY961_RS08695 | L-aspartate oxidase | -1.3 | |
| Carnitine Hydrochloride | DY961_RS10870 | branched-chain-amino-acid transaminase | -1.9 | Yes |
| Carnitine Hydrochloride | DY961_RS11940 | glycine cleavage system protein GcvH | -1.2 | |
| Carnitine Hydrochloride | DY961_RS25145 | choline ABC transporter ATP-binding protein | -1.3 | Yes |
| Carnitine Hydrochloride | DY961_RS25150 | choline ABC transporter permease subunit | -1.4 | Yes |
| Carnitine Hydrochloride | DY961_RS25155 | choline ABC transporter substrate-binding protein | -1.4 | Yes |
| Carnitine Hydrochloride | DY961_RS25165 | GlxA family transcriptional regulator | -2.5 | Yes |
| Carnitine Hydrochloride | DY961_RS25190 | thioesterase family protein | -2.7 | Yes |
| Carnitine Hydrochloride | DY961_RS25195 | L-carnitine dehydrogenase | -2.9 | Yes |
| Carnitine Hydrochloride | DY961_RS25200 | 3-keto-5-aminohexanoate cleavage protein | -2.9 | Yes |
| Carnitine Hydrochloride | DY961_RS25205 | choline ABC transporter substrate-binding protein | -1.7 | Yes |
| Carnitine Hydrochloride | DY961_RS25210 | HTH-type transcriptional regulator CdhR | -2.1 | Yes |
| Carnitine Hydrochloride | DY961_RS25240 | DUF1348 family protein | +1.2 | Yes |
| Carnitine Hydrochloride | DY961_RS25245 | dipeptidase | -2.7 | Yes |
| Carnitine Hydrochloride | DY961_RS25250 | DUF5943 domain-containing protein | -2.5 | Yes |
| Carnitine Hydrochloride | DY961_RS25255 | dimethylglycine demethylation protein DgcA | -3.4 | Yes |
| Carnitine Hydrochloride | DY961_RS25260 | dimethylglycine demethylation protein DgcB | -3.4 | Yes |
| Carnitine Hydrochloride | DY961_RS25270 | electron transfer flavoprotein subunit beta/FixA family protein | -3.3 | Yes |
| Carnitine Hydrochloride | DY961_RS25315 | glycine-betaine demethylase subunit GbcA | -2.8 | Yes |
| Carnitine Hydrochloride | DY961_RS25320 | glycine-betaine demethylase subunit GbcB | -2.9 | Yes |
| Carnitine Hydrochloride | DY961_RS25350 | sarcosine oxidase subunit beta | -3.3 | Yes |
| Carnitine Hydrochloride | DY961_RS25355 | sarcosine oxidase subunit delta family protein | -2.7 | Yes |
| Carnitine Hydrochloride | DY961_RS25360 | sarcosine oxidase subunit alpha | -3.4 | Yes |
| Carnitine Hydrochloride | DY961_RS25365 | sarcosine oxidase subunit gamma family protein | -3.3 | Yes |
| Carnitine Hydrochloride | DY961_RS25775 | homoserine kinase | -3.2 | Yes |
| Choline chloride | DY961_RS12630 | HU family DNA-binding protein | -1.3 | |
| Choline chloride | DY961_RS13195 | choline BCCT transporter BetT | -1.3 | Yes |
| Choline chloride | DY961_RS15620 | N-acetylglutaminylglutamine synthetase | +1.6 | Yes |
| Choline chloride | DY961_RS15625 | N-acetylglutaminylglutamine amidotransferase | +1.4 | Yes |
| Choline chloride | DY961_RS25120 | choline dehydrogenase | -3.0 | Yes |
| Choline chloride | DY961_RS25140 | BCCT family transporter | -2.2 | |
| Choline chloride | DY961_RS25145 | choline ABC transporter ATP-binding protein | -3.0 | Yes |
| Choline chloride | DY961_RS25150 | choline ABC transporter permease subunit | -2.7 | Yes |
| Choline chloride | DY961_RS25155 | choline ABC transporter substrate-binding protein | -2.7 | Yes |
| Choline chloride | DY961_RS25165 | GlxA family transcriptional regulator | -3.0 | Yes |
| Choline chloride | DY961_RS25245 | dipeptidase | -3.1 | Yes |
| Choline chloride | DY961_RS25250 | DUF5943 domain-containing protein | -2.4 | Yes |
| Choline chloride | DY961_RS25255 | dimethylglycine demethylation protein DgcA | -3.0 | Yes |
| Choline chloride | DY961_RS25260 | dimethylglycine demethylation protein DgcB | -3.2 | Yes |
| Choline chloride | DY961_RS25270 | electron transfer flavoprotein subunit beta/FixA family protein | -2.8 | Yes |
| Choline chloride | DY961_RS25315 | glycine-betaine demethylase subunit GbcA | -2.8 | Yes |
| Choline chloride | DY961_RS25320 | glycine-betaine demethylase subunit GbcB | -3.0 | Yes |
| Choline chloride | DY961_RS25350 | sarcosine oxidase subunit beta | -2.9 | Yes |
| Choline chloride | DY961_RS25355 | sarcosine oxidase subunit delta family protein | -2.8 | Yes |
| Choline chloride | DY961_RS25360 | sarcosine oxidase subunit alpha | -3.0 | Yes |
| Choline chloride | DY961_RS25365 | sarcosine oxidase subunit gamma family protein | -2.9 | Yes |
| Choline chloride | DY961_RS25775 | homoserine kinase | -2.9 | Yes |
| Citric Acid | DY961_RS04250 | AAA family ATPase | -1.7 | |
| Citric Acid | DY961_RS06600 | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | -1.5 | |
| Citric Acid | DY961_RS07085 | branched-chain amino acid ABC transporter substrate-binding protein | -1.5 | |
| Citric Acid | DY961_RS07090 | high-affinity branched-chain amino acid ABC transporter permease LivH | -1.8 | |
| Citric Acid | DY961_RS07095 | high-affinity branched-chain amino acid ABC transporter permease LivM | -1.6 | |
| Citric Acid | DY961_RS07100 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG | -1.9 | Yes |
| Citric Acid | DY961_RS07110 | hypothetical protein | -1.1 | |
| Citric Acid | DY961_RS07865 | potassium transporter Kup | -3.6 | Yes |
| Citric Acid | DY961_RS08025 | ABC transporter permease | +1.3 | |
| Citric Acid | DY961_RS08655 | DUF4845 domain-containing protein | -1.2 | |
| Citric Acid | DY961_RS08720 | sensor histidine kinase | -4.5 | Yes |
| Citric Acid | DY961_RS08725 | response regulator | -3.8 | Yes |
| Citric Acid | DY961_RS08735 | tripartite tricarboxylate transporter substrate binding protein | -3.6 | Yes |
| Citric Acid | DY961_RS08745 | tripartite tricarboxylate transporter permease | -1.2 | Yes |
| Citric Acid | DY961_RS15055 | alpha/beta hydrolase | +1.2 | |
| Citric Acid | DY961_RS19805 | acyl-CoA dehydrogenase family protein | -1.6 | |
| Citric Acid | DY961_RS20825 | amino acid permease | +1.2 | Yes |
| Citric Acid | DY961_RS22955 | SpoVR family protein | -1.1 | |
| Citric Acid | DY961_RS23215 | adenosylmethionine decarboxylase | -1.4 | Yes |
| Citric Acid | DY961_RS25630 | CitMHS family transporter | -1.5 | Yes |
| Citric Acid | DY961_RS25670 | GNAT family N-acetyltransferase | -2.1 | |
| Citric Acid | DY961_RS25680 | MFS transporter | -3.3 | Yes |
| Citric Acid | DY961_RS25685 | DUF5924 family protein | +2.4 | Yes |
| Citric Acid | DY961_RS25715 | sigma-54-dependent response regulator transcription factor AlgB | +1.5 | Yes |
| Citric Acid | DY961_RS26270 | hypothetical protein | +1.7 | |
| D,L-Malic Acid | DY961_RS08060 | CaiB/BaiF CoA-transferase family protein | +1.3 | |
| D,L-Malic Acid | DY961_RS15665 | malate:quinone oxidoreductase | -1.5 | Yes |
| D-(+)-Gluconic acid gamma-lactone | DY961_RS10280 | aromatic acid/H+ symport family MFS transporter | +1.8 | |
| D-(+)-Gluconic acid gamma-lactone | DY961_RS10290 | LysR family transcriptional regulator | +1.4 | |
| D-(+)-Gluconic acid gamma-lactone | DY961_RS17710 | GMC family oxidoreductase | -2.8 | Yes |
| D-(+)-Gluconic acid gamma-lactone | DY961_RS17715 | cytochrome c | -2.7 | Yes |
| D-(+)-Gluconic acid gamma-lactone | DY961_RS22695 | XRE family transcriptional regulator | +1.6 | |
| D-Gluconic Acid sodium salt | DY961_RS01700 | ribosome modulation factor | +1.5 | |
| D-Gluconic Acid sodium salt | DY961_RS17710 | GMC family oxidoreductase | -1.9 | Yes |
| D-Gluconic Acid sodium salt | DY961_RS17715 | cytochrome c | -2.1 | Yes |
| D-Gluconic Acid sodium salt | DY961_RS22695 | XRE family transcriptional regulator | +2.0 | |
| D-Gluconic Acid sodium salt | DY961_RS24945 | glycosyltransferase family 1 protein | +1.3 | |
| D-Glucose | DY961_RS15210 | PTS fructose-like transporter subunit IIB | -1.4 | Yes |
| D-Glucose | DY961_RS17830 | TonB-dependent receptor | -1.6 | |
| D-Glucose | DY961_RS17840 | glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase | -2.1 | Yes |
| D-Glucose | DY961_RS22695 | XRE family transcriptional regulator | +1.6 | |
| D-Glucose | DY961_RS28330 | Rrf2 family transcriptional regulator | variable | |
| D-Mannitol | DY961_RS15210 | PTS fructose-like transporter subunit IIB | -1.8 | Yes |
| D-Mannitol | DY961_RS18080 | AraC family transcriptional regulator | -3.3 | Yes |
| D-Mannitol | DY961_RS18085 | sugar ABC transporter substrate-binding protein | -2.9 | Yes |
| D-Mannitol | DY961_RS18095 | carbohydrate ABC transporter permease | -2.8 | Yes |
| D-Mannitol | DY961_RS18105 | mannitol dehydrogenase family protein | -2.9 | Yes |
| D-Mannitol | DY961_RS24945 | glycosyltransferase family 1 protein | +1.2 | |
| D-Mannitol | DY961_RS25570 | glycosyltransferase | -2.0 | |
| DL-Histidine monohydrochloride monohydrate | DY961_RS11280 | N-formylglutamate deformylase | -3.7 | Yes |
| DL-Histidine monohydrochloride monohydrate | DY961_RS11285 | imidazolonepropionase | -3.8 | Yes |
| DL-Histidine monohydrochloride monohydrate | DY961_RS11310 | amino acid permease | -3.4 | Yes |
| DL-Histidine monohydrochloride monohydrate | DY961_RS11320 | cytosine permease | -1.5 | Yes |
| DL-Histidine monohydrochloride monohydrate | DY961_RS11325 | urocanate hydratase | -3.4 | Yes |
| DL-Histidine monohydrochloride monohydrate | DY961_RS11350 | histidine utilization repressor | +2.1 | |
| DL-Histidine monohydrochloride monohydrate | DY961_RS11355 | formimidoylglutamate deiminase | -1.3 | Yes |
| DL-Histidine monohydrochloride monohydrate | DY961_RS28760 | LacI family DNA-binding transcriptional regulator | -2.1 | |
| Ethanol | DY961_RS19215 | bifunctional isocitrate dehydrogenase kinase/phosphatase | -1.5 | Yes |
| Ethanol | DY961_RS27270 | NAD(P) transhydrogenase subunit alpha | -1.3 | |
| Ethanol | DY961_RS27275 | NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta | -1.0 | Yes |
| Ethanol | DY961_RS28930 | quinoprotein ethanol dehydrogenase | -1.4 | Yes |
| Glycerol | DY961_RS01865 | ATP-binding cassette domain-containing protein | variable | |
| Glycerol | DY961_RS03915 | hypothetical protein | variable | |
| Glycerol | DY961_RS15080 | glycerol kinase GlpK | -2.9 | Yes |
| Glycerol | DY961_RS21495 | alpha/beta hydrolase | -1.2 | Yes |
| Hydroxy-L-Proline | DY961_RS06075 | D-hydroxyproline dehydrogenase subunit beta LhpB | -3.2 | Yes |
| Hydroxy-L-Proline | DY961_RS06085 | FAD/NAD(P)-binding oxidoreductase | -3.3 | Yes |
| Hydroxy-L-Proline | DY961_RS06120 | transporter substrate-binding domain-containing protein | -2.8 | Yes |
| Hydroxy-L-Proline | DY961_RS06125 | aconitase family protein | -2.4 | Yes |
| Hydroxy-L-Proline | DY961_RS06130 | amino acid ABC transporter permease | -1.8 | Yes |
| Hydroxy-L-Proline | DY961_RS06150 | dihydrodipicolinate synthase family protein | -3.5 | Yes |
| Hydroxy-L-Proline | DY961_RS06155 | aldehyde dehydrogenase (NADP(+)) | -2.5 | Yes |
| Hydroxy-L-Proline | DY961_RS08205 | BolA/IbaG family iron-sulfur metabolism protein | -1.6 | |
| Hydroxy-L-Proline | DY961_RS12260 | iron donor protein CyaY | -2.6 | |
| Hydroxy-L-Proline | DY961_RS30180 | hypothetical protein | -1.4 | |
| Itaconic Acid | DY961_RS07085 | branched-chain amino acid ABC transporter substrate-binding protein | -1.7 | |
| Itaconic Acid | DY961_RS07090 | high-affinity branched-chain amino acid ABC transporter permease LivH | -1.3 | Yes |
| Itaconic Acid | DY961_RS07865 | potassium transporter Kup | -2.8 | Yes |
| Itaconic Acid | DY961_RS08025 | ABC transporter permease | +1.4 | |
| Itaconic Acid | DY961_RS08045 | TRAP transporter small permease | variable | Yes |
| Itaconic Acid | DY961_RS08050 | TRAP transporter substrate-binding protein | -1.1 | Yes |
| Itaconic Acid | DY961_RS08060 | CaiB/BaiF CoA-transferase family protein | -4.2 | Yes |
| Itaconic Acid | DY961_RS08085 | LysR substrate-binding domain-containing protein | -3.6 | Yes |
| Itaconic Acid | DY961_RS08315 | acetate kinase | -3.0 | |
| Itaconic Acid | DY961_RS11995 | YecA family protein | -1.2 | |
| Itaconic Acid | DY961_RS19545 | START domain-containing protein | -1.1 | |
| Itaconic Acid | DY961_RS19805 | acyl-CoA dehydrogenase family protein | -2.0 | Yes |
| Itaconic Acid | DY961_RS25450 | tryptophan permease | -1.7 | |
| Itaconic Acid | DY961_RS26270 | hypothetical protein | +1.6 | |
| L-Arginine | DY961_RS01605 | NAD-glutamate dehydrogenase GdhB | -2.7 | Yes |
| L-Arginine | DY961_RS07975 | N-succinylarginine dihydrolase | -3.3 | Yes |
| L-Arginine | DY961_RS07980 | succinylglutamate-semialdehyde dehydrogenase | -3.4 | Yes |
| L-Arginine | DY961_RS07985 | arginine N-succinyltransferase | -3.4 | Yes |
| L-Arginine | DY961_RS08015 | M14 family metallopeptidase | +1.7 | Yes |
| L-Arginine | DY961_RS08020 | ABC transporter permease | -1.5 | Yes |
| L-Arginine | DY961_RS08030 | ABC transporter substrate-binding protein | -2.2 | Yes |
| L-Arginine | DY961_RS09650 | Cu(I)-responsive transcriptional regulator | -2.3 | |
| L-Arginine | DY961_RS10700 | amino acid permease | -1.3 | Yes |
| L-Arginine | DY961_RS10705 | ATP-binding protein | -1.6 | Yes |
| L-Arginine | DY961_RS10710 | transporter substrate-binding domain-containing protein | -1.1 | Yes |
| L-Arginine | DY961_RS10715 | two-component system response regulator AruR | -1.5 | |
| L-Arginine | DY961_RS11605 | ABC transporter ATP-binding protein | -1.6 | Yes |
| L-Arginine | DY961_RS11615 | ABC transporter permease | -1.1 | Yes |
| L-Arginine | DY961_RS11620 | ABC transporter permease | -1.0 | Yes |
| L-Arginine | DY961_RS12325 | ammonium transporter | +1.3 | |
| L-Arginine | DY961_RS18970 | threonine ammonia-lyase biosynthetic | -1.5 | |
| L-Arginine | DY961_RS19630 | molecular chaperone HtpG | +1.1 | |
| L-Arginine | DY961_RS20420 | GNAT family N-acetyltransferase | -1.0 | |
| L-Arginine | DY961_RS21405 | agmatine deiminase | -2.3 | Yes |
| L-Arginine | DY961_RS22695 | XRE family transcriptional regulator | variable | |
| L-Arginine | DY961_RS24585 | response regulator transcription factor | +1.9 | |
| L-Asparagine monohydrate | DY961_RS17635 | transcriptional regulator | -1.9 | |
| L-Asparagine monohydrate | DY961_RS17640 | sodium:alanine symporter family protein | -1.7 | Yes |
| L-Asparagine monohydrate | DY961_RS19030 | sensor histidine kinase | +2.1 | Yes |
| L-Aspartic acid sodium salt monohydrate | DY961_RS14480 | TetR/AcrR family transcriptional regulator | -1.3 | Yes |
| L-Aspartic acid sodium salt monohydrate | DY961_RS25055 | methyl-accepting chemotaxis protein | +1.4 | |
| L-Glutamic acid monopotassium salt monohydrate | DY961_RS03000 | sensor histidine kinase | +1.4 | |
| L-Glutamic acid monopotassium salt monohydrate | DY961_RS07435 | glycine cleavage system protein R | +1.3 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | DY961_RS09310 | alanine transaminase | +2.3 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | DY961_RS11610 | ABC transporter substrate-binding protein | +2.1 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | DY961_RS16050 | alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ | +2.2 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | DY961_RS19030 | sensor histidine kinase | +4.6 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | DY961_RS21995 | bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR | +2.8 | Yes |
| L-Glutamine | DY961_RS19030 | sensor histidine kinase | +1.7 | Yes |
| L-Histidine monohydrochloride monohydrate | DY961_RS11280 | N-formylglutamate deformylase | -2.7 | Yes |
| L-Histidine monohydrochloride monohydrate | DY961_RS11285 | imidazolonepropionase | -3.1 | Yes |
| L-Histidine monohydrochloride monohydrate | DY961_RS11310 | amino acid permease | -1.9 | Yes |
| L-Histidine monohydrochloride monohydrate | DY961_RS11320 | cytosine permease | -1.3 | Yes |
| L-Histidine monohydrochloride monohydrate | DY961_RS11325 | urocanate hydratase | -2.6 | Yes |
| L-Histidine monohydrochloride monohydrate | DY961_RS11350 | histidine utilization repressor | +1.7 | |
| L-Histidine monohydrochloride monohydrate | DY961_RS11355 | formimidoylglutamate deiminase | -1.2 | Yes |
| L-Pyroglutamic acid | DY961_RS00680 | M18 family aminopeptidase | -1.5 | |
| L-Pyroglutamic acid | DY961_RS01445 | GspL family type II secretion system protein XcpY | variable | Yes |
| L-Pyroglutamic acid | DY961_RS12165 | heme biosynthesis protein HemY | -1.3 | Yes |
| L-Pyroglutamic acid | DY961_RS14830 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | variable | |
| L-Pyroglutamic acid | DY961_RS14835 | S-formylglutathione hydrolase | -1.1 | |
| L-Pyroglutamic acid | DY961_RS15060 | GlpM family protein | -1.4 | |
| L-Pyroglutamic acid | DY961_RS16775 | allophanate hydrolase subunit 1 | variable | Yes |
| L-Pyroglutamic acid | DY961_RS16790 | MFS transporter | -2.1 | Yes |
| L-Pyroglutamic acid | DY961_RS16795 | LysR family transcriptional regulator | -3.2 | Yes |
| L-Pyroglutamic acid | DY961_RS23910 | lipid A hydroxylase LpxO | variable | Yes |
| L-Pyroglutamic acid | DY961_RS24670 | ACT domain-containing protein | -1.6 | Yes |
| L-Pyroglutamic acid | DY961_RS25790 | zinc ABC transporter substrate-binding protein | -1.4 | |
| L-Pyroglutamic acid | DY961_RS26035 | C17 cyclopropane fatty acid synthase CfaB | variable | Yes |
| L-Pyroglutamic acid | DY961_RS27815 | dTDP-4-dehydrorhamnose reductase | -1.5 | |
| L-Pyroglutamic acid | DY961_RS28750 | sugar ABC transporter ATP-binding protein | +1.4 | Yes |
| L-Pyroglutamic acid | DY961_RS29060 | uracil phosphoribosyltransferase | -1.1 | |
| L-ascorbic acid | DY961_RS01810 | molybdenum cofactor guanylyltransferase MobA | -1.9 | |
| L-ascorbic acid | DY961_RS05375 | GTP 3' 8-cyclase MoaA | -2.3 | |
| L-ascorbic acid | DY961_RS09605 | FCD domain-containing protein | -2.5 | |
| L-ascorbic acid | DY961_RS09650 | Cu(I)-responsive transcriptional regulator | -1.9 | |
| L-ascorbic acid | DY961_RS09805 | L-seryl-tRNA(Sec) selenium transferase | -1.3 | Yes |
| L-ascorbic acid | DY961_RS09820 | formate dehydrogenase subunit beta | -1.2 | |
| L-ascorbic acid | DY961_RS11605 | ABC transporter ATP-binding protein | -1.3 | Yes |
| L-ascorbic acid | DY961_RS11610 | ABC transporter substrate-binding protein | +1.3 | |
| L-ascorbic acid | DY961_RS12655 | heme-binding protein | -1.2 | |
| L-ascorbic acid | DY961_RS12790 | LrgB family protein | -2.7 | Yes |
| L-ascorbic acid | DY961_RS17305 | MFS transporter | -2.6 | Yes |
| L-ascorbic acid | DY961_RS17330 | L-lyxonate dehydratase | -2.3 | Yes |
| L-ascorbic acid | DY961_RS17335 | GguC family protein | -3.0 | Yes |
| L-ascorbic acid | DY961_RS18700 | aminomethyl-transferring glycine dehydrogenase | -2.0 | |
| L-ascorbic acid | DY961_RS19030 | sensor histidine kinase | +1.8 | |
| L-ascorbic acid | DY961_RS19860 | selenide water dikinase SelD | -1.5 | |
| L-ascorbic acid | DY961_RS20795 | hydroxyacylglutathione hydrolase | -3.3 | Yes |
| L-ascorbic acid | DY961_RS26975 | alkyl hydroperoxide reductase subunit C | -1.3 | |
| L-ascorbic acid | DY961_RS27100 | helix-turn-helix transcriptional regulator | -1.0 | |
| L-ascorbic acid | DY961_RS27105 | gamma-glutamyltransferase family protein | -1.2 | |
| L-tyrosine disodium salt | DY961_RS08115 | sigma-54-dependent phenylalanine hydroxylase transcriptional regulator PhhR | -2.8 | Yes |
| L-tyrosine disodium salt | DY961_RS08130 | amino acid aminotransferase | -1.8 | Yes |
| L-tyrosine disodium salt | DY961_RS08150 | amino acid permease | -1.3 | Yes |
| L-tyrosine disodium salt | DY961_RS08155 | 4-hydroxyphenylpyruvate dioxygenase | -3.1 | Yes |
| L-tyrosine disodium salt | DY961_RS08165 | helix-turn-helix transcriptional regulator | -1.2 | Yes |
| L-tyrosine disodium salt | DY961_RS16230 | homogentisate 1 2-dioxygenase | -2.7 | Yes |
| L-tyrosine disodium salt | DY961_RS27430 | 4-carboxymuconolactone decarboxylase | -1.3 | |
| L-tyrosine disodium salt | DY961_RS28760 | LacI family DNA-binding transcriptional regulator | -1.7 | |
| N,N-Dimethylglycine hydrochloride | DY961_RS00735 | glycine betaine ABC transporter substrate-binding protein | -1.9 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS04580 | LysR family transcriptional regulator | +1.3 | |
| N,N-Dimethylglycine hydrochloride | DY961_RS15620 | N-acetylglutaminylglutamine synthetase | +1.5 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS15625 | N-acetylglutaminylglutamine amidotransferase | +1.3 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25145 | choline ABC transporter ATP-binding protein | -2.2 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25155 | choline ABC transporter substrate-binding protein | -1.3 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25165 | GlxA family transcriptional regulator | -2.2 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25240 | DUF1348 family protein | +1.3 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25245 | dipeptidase | -2.8 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25250 | DUF5943 domain-containing protein | -2.2 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25255 | dimethylglycine demethylation protein DgcA | -2.8 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25260 | dimethylglycine demethylation protein DgcB | -2.6 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25350 | sarcosine oxidase subunit beta | -2.9 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25355 | sarcosine oxidase subunit delta family protein | -2.3 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25360 | sarcosine oxidase subunit alpha | -2.5 | Yes |
| N,N-Dimethylglycine hydrochloride | DY961_RS25775 | homoserine kinase | -2.7 | Yes |
| N-Acetyl-L-Glutamic Acid | DY961_RS00740 | DUF485 domain-containing protein | -2.6 | Yes |
| N-Acetyl-L-Glutamic Acid | DY961_RS00745 | cation acetate symporter | -2.2 | Yes |
| N-Acetyl-L-Glutamic Acid | DY961_RS00755 | 3'-5' exonuclease | -2.2 | Yes |
| N-Acetyl-L-Glutamic Acid | DY961_RS01765 | porin OpdQ | -1.5 | |
| N-Acetyl-L-Glutamic Acid | DY961_RS03165 | M20/M25/M40 family metallo-hydrolase | -2.3 | Yes |
| N-Acetyl-L-Glutamic Acid | DY961_RS03170 | GAF domain-containing protein | +1.7 | Yes |
| N-Acetyl-L-Glutamic Acid | DY961_RS06335 | class I SAM-dependent methyltransferase | -1.6 | |
| N-Acetyl-L-Glutamic Acid | DY961_RS07865 | potassium transporter Kup | -1.9 | Yes |
| N-Acetyl-L-Glutamic Acid | DY961_RS12095 | DedA family protein | -1.5 | Yes |
| N-Acetyl-L-Glutamic Acid | DY961_RS19030 | sensor histidine kinase | -2.4 | Yes |
| N-Acetyl-L-Glutamic Acid | DY961_RS23060 | ABC transporter permease | -1.5 | |
| N-Acetyl-L-Glutamic Acid | DY961_RS26270 | hypothetical protein | +1.5 | |
| N-aceyl-L-glutamine | DY961_RS00740 | DUF485 domain-containing protein | -1.8 | Yes |
| N-aceyl-L-glutamine | DY961_RS00745 | cation acetate symporter | -1.7 | Yes |
| N-aceyl-L-glutamine | DY961_RS00755 | 3'-5' exonuclease | -1.5 | Yes |
| N-aceyl-L-glutamine | DY961_RS03165 | M20/M25/M40 family metallo-hydrolase | -2.3 | Yes |
| N-aceyl-L-glutamine | DY961_RS03170 | GAF domain-containing protein | +3.0 | Yes |
| N-aceyl-L-glutamine | DY961_RS19035 | asparaginase | -1.8 | Yes |
| Pimelic acid | DY961_RS00355 | HlyD family secretion protein | +1.4 | Yes |
| Pimelic acid | DY961_RS00370 | alpha/beta hydrolase | +1.3 | Yes |
| Pimelic acid | DY961_RS07400 | IclR family transcriptional regulator | +13.4 | Yes |
| Pimelic acid | DY961_RS07405 | 1 2-glucosyltransferase WapB | +4.7 | Yes |
| Pimelic acid | DY961_RS19790 | 3-hydroxyacyl-CoA dehydrogenase | +1.3 | Yes |
| Pimelic acid | DY961_RS19805 | acyl-CoA dehydrogenase family protein | +1.5 | Yes |
| Potassium acetate | DY961_RS08015 | M14 family metallopeptidase | -1.7 | |
| Potassium acetate | DY961_RS19850 | patatin-like phospholipase family protein | +1.6 | |
| Potassium acetate | DY961_RS25515 | acetyl-CoA hydrolase/transferase family protein | -1.6 | Yes |
| Putrescine Dihydrochloride | DY961_RS03220 | FAD-binding oxidoreductase | -2.1 | Yes |
| Putrescine Dihydrochloride | DY961_RS03345 | PACE efflux transporter | -1.4 | Yes |
| Putrescine Dihydrochloride | DY961_RS16380 | glutamine synthetase family protein | -1.6 | Yes |
| Putrescine Dihydrochloride | DY961_RS16385 | APC family permease | -2.5 | Yes |
| Putrescine Dihydrochloride | DY961_RS19075 | RimK family alpha-L-glutamate ligase | +6.6 | Yes |
| Putrescine Dihydrochloride | DY961_RS20385 | amidotransferase | -2.8 | Yes |
| Putrescine Dihydrochloride | DY961_RS21440 | putrescine--pyruvate aminotransferase | -2.5 | Yes |
| Putrescine Dihydrochloride | DY961_RS21450 | spermidine-binding protein SpuE | +1.6 | Yes |
| Putrescine Dihydrochloride | DY961_RS21455 | polyamine ABC transporter ATP-binding protein | -3.2 | Yes |
| Putrescine Dihydrochloride | DY961_RS21460 | ABC transporter permease subunit | -2.9 | Yes |
| Putrescine Dihydrochloride | DY961_RS21465 | ABC transporter permease subunit | -3.0 | Yes |
| Putrescine Dihydrochloride | DY961_RS28730 | GNAT family N-acetyltransferase/peptidase C39 family protein | +5.3 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS00115 | chemotaxis protein CheV | -1.1 | |
| Sodium 4-Hydroxybenzoate | DY961_RS00345 | FUSC family protein | +1.1 | |
| Sodium 4-Hydroxybenzoate | DY961_RS00355 | HlyD family secretion protein | +1.3 | |
| Sodium 4-Hydroxybenzoate | DY961_RS00945 | type I glyceraldehyde-3-phosphate dehydrogenase | +1.6 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS01035 | NUDIX hydrolase | -1.5 | |
| Sodium 4-Hydroxybenzoate | DY961_RS01315 | LysR family transcriptional regulator | -1.7 | |
| Sodium 4-Hydroxybenzoate | DY961_RS01970 | Na(+)-translocating NADH-quinone reductase subunit A | +1.6 | |
| Sodium 4-Hydroxybenzoate | DY961_RS02190 | TetR/AcrR family transcriptional regulator | +2.8 | |
| Sodium 4-Hydroxybenzoate | DY961_RS02565 | atu genes transcriptional repressor AtuR | -1.5 | |
| Sodium 4-Hydroxybenzoate | DY961_RS04095 | NUDIX hydrolase | +1.4 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS05295 | aromatic acid/H+ symport family MFS transporter | -2.2 | |
| Sodium 4-Hydroxybenzoate | DY961_RS08465 | hypothetical protein | -1.5 | |
| Sodium 4-Hydroxybenzoate | DY961_RS08730 | OprD family porin | -1.2 | |
| Sodium 4-Hydroxybenzoate | DY961_RS10275 | aldehyde dehydrogenase family protein | -2.0 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS10280 | aromatic acid/H+ symport family MFS transporter | -3.1 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS10290 | LysR family transcriptional regulator | -2.5 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS11980 | hotdog fold domain-containing protein | +1.1 | |
| Sodium 4-Hydroxybenzoate | DY961_RS12055 | 2Fe-2S iron-sulfur cluster-binding protein | +1.5 | |
| Sodium 4-Hydroxybenzoate | DY961_RS12690 | hypothetical protein | +1.3 | |
| Sodium 4-Hydroxybenzoate | DY961_RS14535 | hypothetical protein | +1.5 | |
| Sodium 4-Hydroxybenzoate | DY961_RS14770 | alanine/glycine:cation symporter family protein | +1.4 | |
| Sodium 4-Hydroxybenzoate | DY961_RS19235 | xanthine dehydrogenase molybdopterin binding subunit | -1.0 | |
| Sodium 4-Hydroxybenzoate | DY961_RS19785 | FadR/GntR family transcriptional regulator | -1.5 | |
| Sodium 4-Hydroxybenzoate | DY961_RS20470 | aminodeoxychorismate synthase component I | -2.0 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS23705 | glycine oxidase ThiO | -1.5 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS25120 | choline dehydrogenase | -1.0 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS25685 | DUF5924 family protein | +1.0 | |
| Sodium 4-Hydroxybenzoate | DY961_RS25715 | sigma-54-dependent response regulator transcription factor AlgB | +1.5 | |
| Sodium 4-Hydroxybenzoate | DY961_RS26695 | type VI secretion system accessory protein TagJ | -1.4 | |
| Sodium 4-Hydroxybenzoate | DY961_RS27040 | pca operon transcription factor PcaQ | -2.9 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS27045 | protocatechuate 3 4-dioxygenase subunit beta | -2.5 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS27050 | protocatechuate 3 4-dioxygenase subunit alpha | -2.5 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS27265 | Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha | -1.5 | |
| Sodium 4-Hydroxybenzoate | DY961_RS27270 | NAD(P) transhydrogenase subunit alpha | -2.0 | |
| Sodium 4-Hydroxybenzoate | DY961_RS27275 | NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta | -1.5 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS27400 | CoA transferase subunit A | -3.1 | Yes |
| Sodium 4-Hydroxybenzoate | DY961_RS27430 | 4-carboxymuconolactone decarboxylase | -3.0 | |
| Sodium 4-Hydroxybenzoate | DY961_RS27475 | MFS transporter | -1.9 | |
| Sodium 4-Hydroxybenzoate | DY961_RS27485 | TetR/AcrR family transcriptional regulator | -1.2 | |
| Sodium 4-Hydroxybenzoate | DY961_RS27500 | MDR family MFS transporter | +1.5 | Yes |
| Sodium Benzoate | DY961_RS00545 | GNAT family protein | -1.7 | Yes |
| Sodium Benzoate | DY961_RS01865 | ATP-binding cassette domain-containing protein | variable | |
| Sodium Benzoate | DY961_RS01970 | Na(+)-translocating NADH-quinone reductase subunit A | +1.8 | |
| Sodium Benzoate | DY961_RS01985 | NADH:ubiquinone reductase (Na(+)-transporting) subunit D | +1.7 | |
| Sodium Benzoate | DY961_RS02190 | TetR/AcrR family transcriptional regulator | +2.6 | |
| Sodium Benzoate | DY961_RS02195 | radical SAM protein | +1.1 | |
| Sodium Benzoate | DY961_RS02980 | transglutaminase family protein | +1.1 | |
| Sodium Benzoate | DY961_RS04055 | secretin N-terminal domain-containing protein | +1.7 | Yes |
| Sodium Benzoate | DY961_RS04105 | NADP-dependent isocitrate dehydrogenase | +1.8 | Yes |
| Sodium Benzoate | DY961_RS05050 | AraC family transcriptional regulator | -2.5 | Yes |
| Sodium Benzoate | DY961_RS05055 | benzoate 1 2-dioxygenase large subunit | -3.6 | Yes |
| Sodium Benzoate | DY961_RS05060 | benzoate 1 2-dioxygenase small subunit | -2.7 | Yes |
| Sodium Benzoate | DY961_RS05065 | benzoate 1 2-dioxygenase electron transfer component BenC | -3.1 | Yes |
| Sodium Benzoate | DY961_RS05120 | catechol 1 2-dioxygenase | -3.6 | Yes |
| Sodium Benzoate | DY961_RS08695 | L-aspartate oxidase | -1.8 | |
| Sodium Benzoate | DY961_RS08745 | tripartite tricarboxylate transporter permease | -1.2 | |
| Sodium Benzoate | DY961_RS09395 | aspartate 1-decarboxylase | -1.2 | Yes |
| Sodium Benzoate | DY961_RS10915 | acyl-CoA dehydrogenase | -1.1 | |
| Sodium Benzoate | DY961_RS12165 | heme biosynthesis protein HemY | -1.2 | |
| Sodium Benzoate | DY961_RS12690 | hypothetical protein | -1.4 | Yes |
| Sodium Benzoate | DY961_RS13060 | transporter substrate-binding domain-containing protein | +1.7 | |
| Sodium Benzoate | DY961_RS14590 | multidrug efflux RND transporter periplasmic adaptor subunit MexJ | variable | |
| Sodium Benzoate | DY961_RS14690 | type I methionyl aminopeptidase | -2.1 | Yes |
| Sodium Benzoate | DY961_RS16050 | alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ | -1.6 | |
| Sodium Benzoate | DY961_RS18780 | hydroxyisourate hydrolase | -1.6 | |
| Sodium Benzoate | DY961_RS19540 | YkgJ family cysteine cluster protein | -1.9 | |
| Sodium Benzoate | DY961_RS19860 | selenide water dikinase SelD | variable | |
| Sodium Benzoate | DY961_RS20470 | aminodeoxychorismate synthase component I | -1.6 | |
| Sodium Benzoate | DY961_RS20545 | alpha/beta fold hydrolase | variable | |
| Sodium Benzoate | DY961_RS22420 | GNAT family N-acetyltransferase | -1.7 | |
| Sodium Benzoate | DY961_RS25855 | sigma-54 dependent transcriptional regulator | +1.2 | |
| Sodium Benzoate | DY961_RS25860 | sensor histidine kinase | +1.0 | |
| Sodium Benzoate | DY961_RS27060 | IclR family transcriptional regulator C-terminal domain-containing protein | -3.8 | Yes |
| Sodium Benzoate | DY961_RS27100 | helix-turn-helix transcriptional regulator | +1.0 | |
| Sodium Benzoate | DY961_RS27400 | CoA transferase subunit A | -3.8 | Yes |
| Sodium Benzoate | DY961_RS27405 | CoA-transferase subunit beta | -4.2 | |
| Sodium Benzoate | DY961_RS27420 | 3-carboxy-cis cis-muconate cycloisomerase | -5.5 | Yes |
| Sodium Benzoate | DY961_RS28615 | FAD-dependent oxidoreductase | -2.1 | |
| Sodium Benzoate | DY961_RS29025 | YajG family lipoprotein | +1.4 | |
| Sodium D-Lactate | DY961_RS09620 | FAD-binding and (Fe-S)-binding domain-containing protein | -2.8 | Yes |
| Sodium Fumarate dibasic | DY961_RS06500 | C4-dicarboxylate transporter DctC | -3.2 | Yes |
| Sodium Fumarate dibasic | DY961_RS08015 | M14 family metallopeptidase | -1.7 | |
| Sodium Fumarate dibasic | DY961_RS11675 | two-component system sensor histidine kinase DctB | -2.2 | Yes |
| Sodium Fumarate dibasic | DY961_RS11680 | two-component system response regulator DctD | -3.0 | Yes |
| Sodium acetate | DY961_RS08320 | phosphate acetyltransferase | -1.0 | Yes |
| Sodium acetate | DY961_RS25515 | acetyl-CoA hydrolase/transferase family protein | -1.4 | Yes |
| Sodium butyrate | DY961_RS00155 | MarR family transcriptional regulator | +1.9 | |
| Sodium butyrate | DY961_RS00740 | DUF485 domain-containing protein | +1.3 | Yes |
| Sodium butyrate | DY961_RS00745 | cation acetate symporter | +1.3 | Yes |
| Sodium butyrate | DY961_RS02820 | MFS transporter | +1.4 | |
| Sodium butyrate | DY961_RS08090 | LysR family transcriptional regulator | -1.1 | Yes |
| Sodium butyrate | DY961_RS08105 | DUF2790 domain-containing protein | -1.5 | Yes |
| Sodium butyrate | DY961_RS13275 | PhoH family protein | -1.4 | |
| Sodium butyrate | DY961_RS13400 | efflux transporter outer membrane subunit | +3.9 | Yes |
| Sodium butyrate | DY961_RS13405 | FUSC family protein | +1.9 | Yes |
| Sodium butyrate | DY961_RS13410 | DUF1656 domain-containing protein | +3.6 | Yes |
| Sodium butyrate | DY961_RS13415 | HlyD family secretion protein | +3.9 | Yes |
| Sodium butyrate | DY961_RS17980 | FAD-binding oxidoreductase | +1.3 | |
| Sodium butyrate | DY961_RS23980 | transcriptional regulator PsdR | -1.6 | |
| Sodium butyrate | DY961_RS24945 | glycosyltransferase family 1 protein | +1.6 | |
| Sodium butyrate | DY961_RS28475 | two-component system sensor histidine kinase BfiS | -1.5 | Yes |
| Sodium butyrate | DY961_RS28480 | acyl-CoA synthetase | -2.2 | Yes |
| Sodium octanoate | DY961_RS00450 | ankyrin repeat domain-containing protein | -1.7 | |
| Sodium octanoate | DY961_RS02190 | TetR/AcrR family transcriptional regulator | +1.6 | |
| Sodium octanoate | DY961_RS13235 | acetyl-CoA C-acyltransferase | -1.0 | Yes |
| Sodium octanoate | DY961_RS22550 | acyl-CoA dehydrogenase C-terminal domain-containing protein | -1.2 | Yes |
| Sodium octanoate | DY961_RS25570 | glycosyltransferase | -3.2 | |
| Sodium octanoate | DY961_RS28490 | MBL fold metallo-hydrolase | -1.3 | |
| Sodium octanoate | DY961_RS29230 | carbonate dehydratase | -1.6 | Yes |
| Sodium propionate | DY961_RS01765 | porin OpdQ | variable | |
| Sodium propionate | DY961_RS03390 | YihY/virulence factor BrkB family protein | variable | Yes |
| Sodium propionate | DY961_RS08090 | LysR family transcriptional regulator | -1.2 | Yes |
| Sodium propionate | DY961_RS08520 | 2-methylcitrate synthase | -3.3 | Yes |
| Sodium propionate | DY961_RS08525 | Fe/S-dependent 2-methylisocitrate dehydratase AcnD | -2.8 | Yes |
| Sodium propionate | DY961_RS09900 | magnesium-translocating P-type ATPase | +1.3 | |
| Sodium propionate | DY961_RS09925 | PaaI family thioesterase | +1.2 | |
| Sodium propionate | DY961_RS10405 | mechanosensitive ion channel family protein | +1.5 | Yes |
| Sodium propionate | DY961_RS15625 | N-acetylglutaminylglutamine amidotransferase | variable | Yes |
| Sodium propionate | DY961_RS19850 | patatin-like phospholipase family protein | variable | |
| Sodium propionate | DY961_RS20800 | methyltransferase domain-containing protein | variable | Yes |
| Sodium propionate | DY961_RS21375 | delta-9 fatty acid desaturase DesA | variable | |
| Sodium propionate | DY961_RS21425 | glutamine synthetase family protein | variable | |
| Sodium propionate | DY961_RS22960 | YeaH/YhbH family protein | variable | Yes |
| Sodium propionate | DY961_RS23395 | DUF3015 domain-containing protein | -1.9 | |
| Sodium propionate | DY961_RS23550 | DUF4105 domain-containing protein | -2.0 | Yes |
| Sodium propionate | DY961_RS24485 | Nudix family hydrolase | -1.5 | |
| Sodium propionate | DY961_RS24935 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | variable | |
| Sodium propionate | DY961_RS25740 | endonuclease/exonuclease/phosphatase family protein | variable | |
| Sodium propionate | DY961_RS26035 | C17 cyclopropane fatty acid synthase CfaB | variable | Yes |
| Sodium propionate | DY961_RS27815 | dTDP-4-dehydrorhamnose reductase | -1.5 | |
| Sodium propionate | DY961_RS28730 | GNAT family N-acetyltransferase/peptidase C39 family protein | +1.1 | |
| Sodium propionate | DY961_RS28750 | sugar ABC transporter ATP-binding protein | variable | |
| Sodium propionate | DY961_RS29060 | uracil phosphoribosyltransferase | variable | Yes |
| Sodium pyruvate | DY961_RS00740 | DUF485 domain-containing protein | -1.5 | Yes |
| Sodium pyruvate | DY961_RS00745 | cation acetate symporter | -1.5 | Yes |
| Sodium pyruvate | DY961_RS09605 | FCD domain-containing protein | +6.7 | Yes |
| Sodium pyruvate | DY961_RS14425 | GMC family oxidoreductase | +1.5 | Yes |
| Sodium pyruvate | DY961_RS23400 | carbon starvation CstA family protein | -1.1 | Yes |
| Sodium pyruvate | DY961_RS23405 | YbdD/YjiX family protein | -1.3 | Yes |
| Sodium pyruvate | DY961_RS25055 | methyl-accepting chemotaxis protein | +2.2 | Yes |
| Sodium succinate dibasic hexahydrate | DY961_RS06500 | C4-dicarboxylate transporter DctC | -2.8 | Yes |
| Sodium succinate dibasic hexahydrate | DY961_RS11675 | two-component system sensor histidine kinase DctB | -2.3 | Yes |
| Sodium succinate dibasic hexahydrate | DY961_RS11680 | two-component system response regulator DctD | -3.1 | Yes |
| Spermidine trihydrochloride | DY961_RS03220 | FAD-binding oxidoreductase | -1.1 | Yes |
| Spermidine trihydrochloride | DY961_RS03345 | PACE efflux transporter | -1.5 | |
| Spermidine trihydrochloride | DY961_RS12400 | alanine racemase | -1.2 | |
| Spermidine trihydrochloride | DY961_RS12435 | FAD-binding oxidoreductase | -3.5 | Yes |
| Spermidine trihydrochloride | DY961_RS16385 | APC family permease | -1.6 | Yes |
| Spermidine trihydrochloride | DY961_RS20385 | amidotransferase | -2.6 | Yes |
| Spermidine trihydrochloride | DY961_RS21440 | putrescine--pyruvate aminotransferase | -1.7 | Yes |
| Spermidine trihydrochloride | DY961_RS21445 | putrescine-binding protein SpuD | -2.1 | Yes |
| Spermidine trihydrochloride | DY961_RS21450 | spermidine-binding protein SpuE | -2.0 | Yes |
| Spermidine trihydrochloride | DY961_RS21455 | polyamine ABC transporter ATP-binding protein | -3.5 | Yes |
| Spermidine trihydrochloride | DY961_RS21460 | ABC transporter permease subunit | -3.3 | Yes |
| Spermidine trihydrochloride | DY961_RS21465 | ABC transporter permease subunit | -3.0 | Yes |
| Spermidine trihydrochloride | DY961_RS26925 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | -3.0 | Yes |
| Spermidine trihydrochloride | DY961_RS26935 | beta-alanine--pyruvate aminotransferase | -1.7 | Yes |
| Spermidine trihydrochloride | DY961_RS26940 | HTH-type transcriptional activator BauR | -2.1 | Yes |
| Stachyose hydrate | DY961_RS10280 | aromatic acid/H+ symport family MFS transporter | +1.4 | |
| Succinic Acid | DY961_RS01955 | transcription-repair coupling factor | +1.3 | Yes |
| Succinic Acid | DY961_RS06500 | C4-dicarboxylate transporter DctC | -4.0 | Yes |
| Succinic Acid | DY961_RS06510 | AraC family transcriptional regulator | -2.1 | Yes |
| Succinic Acid | DY961_RS07480 | 2-aminobenzoylacetyl-CoA thioesterase PqsE | +1.8 | |
| Succinic Acid | DY961_RS07485 | anthraniloyl-CoA anthraniloyltransferase | +1.8 | |
| Succinic Acid | DY961_RS07495 | 2-heptyl-4(1H)-quinolone synthase subunit PqsB | +1.7 | Yes |
| Succinic Acid | DY961_RS10170 | c-di-GMP-binding multidrug transporter transcriptional regulator BrlR | +1.9 | |
| Succinic Acid | DY961_RS11605 | ABC transporter ATP-binding protein | -1.3 | Yes |
| Succinic Acid | DY961_RS11675 | two-component system sensor histidine kinase DctB | -3.1 | Yes |
| Succinic Acid | DY961_RS11680 | two-component system response regulator DctD | -3.6 | Yes |
| Succinic Acid | DY961_RS11740 | ADP compounds hydrolase NudE | +1.8 | Yes |
| Succinic Acid | DY961_RS19035 | asparaginase | -1.4 | |
| Succinic Acid | DY961_RS28730 | GNAT family N-acetyltransferase/peptidase C39 family protein | +1.1 | Yes |
| Trisodium citrate dihydrate | DY961_RS08720 | sensor histidine kinase | -3.6 | Yes |
| Trisodium citrate dihydrate | DY961_RS08725 | response regulator | -3.2 | Yes |
| Trisodium citrate dihydrate | DY961_RS08735 | tripartite tricarboxylate transporter substrate binding protein | -3.6 | Yes |
| Trisodium citrate dihydrate | DY961_RS08745 | tripartite tricarboxylate transporter permease | -1.4 | Yes |
| Trisodium citrate dihydrate | DY961_RS25630 | CitMHS family transporter | -2.1 | Yes |
| Trisodium citrate dihydrate | DY961_RS25635 | TerC family protein | -1.1 | Yes |
| Trisodium citrate dihydrate | DY961_RS25685 | DUF5924 family protein | +1.1 | Yes |
| Tween 20 | DY961_RS00165 | FimV family protein | +1.4 | |
| Tween 20 | DY961_RS06655 | hypothetical protein | +1.6 | |
| Tween 20 | DY961_RS08900 | DUF2523 family protein | +2.0 | |
| Tween 20 | DY961_RS08925 | hypothetical protein | +1.5 | |
| Tween 20 | DY961_RS09220 | DUF4124 domain-containing protein | +1.8 | |
| Tween 20 | DY961_RS15060 | GlpM family protein | +1.4 | |
| Tween 20 | DY961_RS15095 | glycerol kinase GlpK | +1.3 | |
| Tween 20 | DY961_RS21885 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | -1.4 | Yes |
| Tween 20 | DY961_RS25570 | glycosyltransferase | -2.5 | Yes |
| Tween 20 | DY961_RS28730 | GNAT family N-acetyltransferase/peptidase C39 family protein | +1.2 | |
| a-Ketoglutaric acid disodium salt hydrate | DY961_RS25855 | sigma-54 dependent transcriptional regulator | -2.7 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | DY961_RS25860 | sensor histidine kinase | -3.2 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | DY961_RS25955 | MFS transporter | -3.0 | Yes |
| anthranilic acid | DY961_RS05095 | AraC family transcriptional regulator | -2.8 | Yes |
| anthranilic acid | DY961_RS27400 | CoA transferase subunit A | -1.7 | Yes |
| casamino acids | DY961_RS09925 | PaaI family thioesterase | +1.3 | Yes |
| potassium citramalate monohydrate | DY961_RS08040 | C4-dicarboxylate TRAP transporter large permease protein DctM | variable | Yes |
| potassium citramalate monohydrate | DY961_RS08045 | TRAP transporter small permease | variable | Yes |
| potassium citramalate monohydrate | DY961_RS08050 | TRAP transporter substrate-binding protein | variable | Yes |
| potassium citramalate monohydrate | DY961_RS08060 | CaiB/BaiF CoA-transferase family protein | -1.6 | Yes |
| potassium citramalate monohydrate | DY961_RS08085 | LysR substrate-binding domain-containing protein | variable | Yes |