| Condition | Gene | Description | Fitness | Cons. |
|---|
| Adenosine | b0964 | hypothetical protein (NCBI) | -1.8 | |
| Adenosine | b1037 | outer membrane lipoprotein (NCBI) | +3.0 | |
| Adenosine | b1039 | predicted transport protein (NCBI) | +1.3 | |
| Adenosine | b1040 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | +2.8 | |
| Adenosine | b1041 | curlin nucleator protein, minor subunit in curli complex (NCBI) | +2.9 | |
| Adenosine | b1042 | cryptic curlin major subunit (NCBI) | +2.7 | |
| Adenosine | b1341 | orf, hypothetical protein (VIMSS) | +1.6 | |
| Adenosine | b2067 | predicted diguanylate cyclase, GGDEF domain signalling protein (NCBI) | +1.5 | |
| Adenosine | b2101 | predicted DNA-binding transcriptional regulator (NCBI) | +2.4 | |
| Adenosine | b2127 | DNA-binding transcriptional regulator (NCBI) | +3.5 | |
| Adenosine | b2475 | hypothetical protein (NCBI) | -2.0 | |
| Adenosine | b3752 | ribokinase (NCBI) | +1.6 | |
| Adenosine | b3934 | DNA-binding transcriptional dual regulator (NCBI) | +3.4 | |
| Adenosine | b4383 | phosphopentomutase (NCBI) | -3.7 | Yes |
| Adenosine | b4384 | purine nucleoside phosphorylase (NCBI) | -3.6 | Yes |
| Adenosine | b1660 | predicted transporter (NCBI) | -1.5 | Yes |
| Cytidine | b2143 | cytidine deaminase (NCBI) | -2.6 | Yes |
| Cytidine | b3831 | uridine phosphorylase (NCBI) | -3.1 | Yes |
| Cytidine | b4383 | phosphopentomutase (NCBI) | -3.2 | Yes |
| D-Fructose | b2167 | fused fructose-specific PTS enzymes: IIBcomponent/IIC components (NCBI) | -1.6 | Yes |
| D-Fructose | b2169 | fused fructose-specific PTS enzymes: IIA component/HPr component (NCBI) | -1.5 | Yes |
| D-Galactose | b0757 | galactokinase GalK (EC 2.7.1.6) (from data) | -4.8 | Yes |
| D-Galactose | b0758 | galactose-1-phosphate uridylyltransferase (NCBI) | -6.0 | Yes |
| D-Galactose | b2151 | DNA-binding transcriptional repressor (NCBI) | +2.3 | Yes |
| D-Galactose | b2837 | DNA-binding transcriptional repressor (NCBI) | +2.0 | Yes |
| D-Galactose | b2943 | galactose:H+ symporter (galP) (from data) | -3.2 | Yes |
| D-Galacturonic Acid monohydrate | b0076 | probable transcriptional activator for leuABCD operon (VIMSS) | variable | |
| D-Galacturonic Acid monohydrate | b0120 | S-adenosylmethionine decarboxylase proenzyme (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b0133 | pantoate--beta-alanine ligase (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b0606 | alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) | variable | |
| D-Galacturonic Acid monohydrate | b0757 | galactokinase GalK (EC 2.7.1.6) (from data) | -1.1 | |
| D-Galacturonic Acid monohydrate | b0758 | galactose-1-phosphate uridylyltransferase (NCBI) | -3.1 | |
| D-Galacturonic Acid monohydrate | b0774 | adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b0775 | biotin synthase (NCBI) | -2.4 | |
| D-Galacturonic Acid monohydrate | b0776 | 8-amino-7-oxononanoate synthase (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b0777 | predicted methltransferase, enzyme of biotin synthesis (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b0960 | orf, hypothetical protein (VIMSS) | +1.4 | |
| D-Galacturonic Acid monohydrate | b0963 | methylglyoxal synthase (VIMSS) | variable | |
| D-Galacturonic Acid monohydrate | b1060 | orf, hypothetical protein (VIMSS) | variable | |
| D-Galacturonic Acid monohydrate | b1827 | predicted DNA-binding transcriptional regulator (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b2392 | manganese transport protein MntH (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b2735 | predicted DNA-binding transcriptional regulator (RefSeq) | -4.5 | |
| D-Galacturonic Acid monohydrate | b3091 | altronate hydrolase (NCBI) | -5.1 | Yes |
| D-Galacturonic Acid monohydrate | b3092 | glucuronate isomerase (NCBI) | -4.3 | Yes |
| D-Galacturonic Acid monohydrate | b3093 | hexuronate transporter (NCBI) | -2.6 | Yes |
| D-Galacturonic Acid monohydrate | b3124 | glycerate kinase I (RefSeq) | -3.6 | |
| D-Galacturonic Acid monohydrate | b3412 | carboxylesterase of pimeloyl-CoA synthesis (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b3523 | predicted transporter (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b3526 | ketodeoxygluconokinase (VIMSS) | -4.2 | Yes |
| D-Galacturonic Acid monohydrate | b3908 | superoxide dismutase, manganese (VIMSS) | variable | |
| D-Galacturonic Acid monohydrate | b4124 | DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b4208 | D-alanine/D-serine/glycine transporter (NCBI) | variable | |
| D-Galacturonic Acid monohydrate | b4243 | orf, hypothetical protein (VIMSS) | -2.2 | |
| D-Galacturonic Acid monohydrate | b1521 | tagaturonate reductase (NCBI) | -2.3 | Yes |
| D-Galacturonic Acid monohydrate | b3572 | valine--pyruvate transaminase (NCBI) | variable | |
| D-Gluconic Acid sodium salt | b0963 | methylglyoxal synthase (VIMSS) | -1.5 | |
| D-Gluconic Acid sodium salt | b1851 | phosphogluconate dehydratase (NCBI) | -1.7 | Yes |
| D-Gluconic Acid sodium salt | b2029 | 6-phosphogluconate dehydrogenase (NCBI) | -1.5 | |
| D-Gluconic Acid sodium salt | b3437 | gluconokinase 2, thermoresistant (VIMSS) | -1.6 | Yes |
| D-Gluconic Acid sodium salt | b3415 | gluconate transporter, high-affinity GNT I system (NCBI) | -2.8 | Yes |
| D-Glucosamine Hydrochloride | b0223 | predicted amidotransfease (NCBI) | -1.3 | |
| D-Glucosamine Hydrochloride | b0606 | alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) | -2.1 | |
| D-Glucosamine Hydrochloride | b1817 | fused mannose-specific PTS enzymes: IIA component/IIB component (NCBI) | -3.9 | Yes |
| D-Glucosamine Hydrochloride | b1819 | mannose-specific enzyme IID component of PTS (NCBI) | -4.1 | Yes |
| D-Glucosamine Hydrochloride | b2167 | fused fructose-specific PTS enzymes: IIBcomponent/IIC components (NCBI) | -1.1 | Yes |
| D-Glucosamine Hydrochloride | b3355 | predicted phosphoribulokinase (NCBI) | -1.1 | |
| D-Glucosamine Hydrochloride | b3675 | predicted inner membrane protein (NCBI) | -1.4 | |
| D-Glucosamine Hydrochloride | b4014 | malate synthase (NCBI) | +1.1 | |
| D-Glucose | b0133 | pantoate--beta-alanine ligase (NCBI) | variable | |
| D-Glucose | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | variable | |
| D-Glucose | b0141 | predicted fimbrial-like adhesin protein (NCBI) | variable | |
| D-Glucose | b0300 | putative ARAC-type regulatory protein (VIMSS) | variable | |
| D-Glucose | b0695 | fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein (NCBI) | variable | |
| D-Glucose | b0774 | adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) | variable | Yes |
| D-Glucose | b0775 | biotin synthase (NCBI) | variable | |
| D-Glucose | b0776 | 8-amino-7-oxononanoate synthase (NCBI) | variable | |
| D-Glucose | b0812 | DNA protection during starvation conditions (NCBI) | variable | |
| D-Glucose | b1060 | orf, hypothetical protein (VIMSS) | variable | |
| D-Glucose | b1490 | predicted diguanylate cyclase (RefSeq) | variable | |
| D-Glucose | b1702 | phosphoenolpyruvate synthase (NCBI) | variable | |
| D-Glucose | b1741 | endonuclease of nucleotide excision repair (NCBI) | variable | |
| D-Glucose | b1783 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | variable | |
| D-Glucose | b2029 | 6-phosphogluconate dehydrogenase (NCBI) | -1.6 | |
| D-Glucose | b2252 | hypothetical protein (NCBI) | variable | |
| D-Glucose | b2290 | aspartate aminotransferase (NCBI) | variable | |
| D-Glucose | b2742 | predicted outer membrane lipoprotein (NCBI) | variable | |
| D-Glucose | b3234 | serine endoprotease, periplasmic (NCBI) | variable | |
| D-Glucose | b3359 | bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase (NCBI) | variable | |
| D-Glucose | b3412 | carboxylesterase of pimeloyl-CoA synthesis (NCBI) | variable | |
| D-Glucose | b3454 | ATP-binding component of leucine transport (VIMSS) | variable | |
| D-Glucose | b3455 | leucine/isoleucine/valine transporter subunit (NCBI) | variable | |
| D-Glucose | b3456 | leucine/isoleucine/valine transporter subunit (NCBI) | variable | |
| D-Glucose | b3457 | leucine/isoleucine/valine transporter subunit (NCBI) | variable | |
| D-Glucose | b3458 | leucine transporter subunit (NCBI) | variable | |
| D-Glucose | b3459 | hypothetical protein (NCBI) | variable | |
| D-Glucose | b3529 | predicted diguanylate cyclase (RefSeq) | variable | |
| D-Glucose | b3655 | hypothetical protein (NCBI) | variable | |
| D-Glucose | b3920 | hypothetical protein (NCBI) | variable | |
| D-Glucose | b4169 | N-acetylmuramoyl-l-alanine amidase II (NCBI) | variable | |
| D-Glucose | b4208 | D-alanine/D-serine/glycine transporter (NCBI) | variable | |
| D-Glucose | b4243 | orf, hypothetical protein (VIMSS) | variable | |
| D-Glucose | b3460 | leucine/isoleucine/valine transporter subunit (NCBI) | variable | |
| D-Glucose-6-Phosphate sodium salt | b3359 | bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase (NCBI) | -1.9 | |
| D-Glucose-6-Phosphate sodium salt | b3666 | sugar phosphate antiporter (NCBI) | -1.5 | |
| D-Glucose-6-Phosphate sodium salt | b3667 | regulator of uhpT (VIMSS) | -1.2 | Yes |
| D-Glucose-6-Phosphate sodium salt | b3669 | DNA-binding response regulator in two-component regulatory system wtih UhpB (NCBI) | -1.2 | Yes |
| D-Glucuronic Acid | b0960 | orf, hypothetical protein (VIMSS) | +2.0 | |
| D-Glucuronic Acid | b2587 | alpha-ketoglutarate transporter (NCBI) | +1.3 | |
| D-Glucuronic Acid | b2735 | predicted DNA-binding transcriptional regulator (RefSeq) | -4.3 | |
| D-Glucuronic Acid | b3092 | glucuronate isomerase (NCBI) | -1.7 | Yes |
| D-Glucuronic Acid | b3093 | hexuronate transporter (NCBI) | -1.4 | Yes |
| D-Glucuronic Acid | b3124 | glycerate kinase I (RefSeq) | -4.9 | |
| D-Glucuronic Acid | b3454 | ATP-binding component of leucine transport (VIMSS) | +1.5 | |
| D-Glucuronic Acid | b3455 | leucine/isoleucine/valine transporter subunit (NCBI) | +1.6 | |
| D-Glucuronic Acid | b3456 | leucine/isoleucine/valine transporter subunit (NCBI) | +1.6 | |
| D-Glucuronic Acid | b3457 | leucine/isoleucine/valine transporter subunit (NCBI) | +1.3 | |
| D-Glucuronic Acid | b3458 | leucine transporter subunit (NCBI) | +1.2 | Yes |
| D-Glucuronic Acid | b3523 | predicted transporter (NCBI) | +2.0 | |
| D-Glucuronic Acid | b3526 | ketodeoxygluconokinase (VIMSS) | -4.6 | |
| D-Glucuronic Acid | b4024 | aspartate kinase III (NCBI) | -1.2 | |
| D-Glucuronic Acid | b4322 | mannonate dehydratase (NCBI) | -4.3 | Yes |
| D-Glucuronic Acid | b3460 | leucine/isoleucine/valine transporter subunit (NCBI) | +1.5 | |
| D-Glucuronic Acid | b3572 | valine--pyruvate transaminase (NCBI) | -1.2 | |
| D-Maltose monohydrate | b3416 | 4-alpha-glucanotransferase (amylomaltase) (NCBI) | -5.3 | Yes |
| D-Maltose monohydrate | b3418 | transcriptional regulator MalT (NCBI) | -2.9 | Yes |
| D-Maltose monohydrate | b4032 | maltose transporter subunit (NCBI) | -2.7 | Yes |
| D-Maltose monohydrate | b4033 | maltose transporter subunit (NCBI) | -3.2 | Yes |
| D-Maltose monohydrate | b4034 | maltose ABC transporter periplasmic protein (NCBI) | -2.9 | Yes |
| D-Maltose monohydrate | b4035 | fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein (NCBI) | -3.1 | Yes |
| D-Maltose monohydrate | b3417 | maltodextrin phosphorylase (NCBI) | -1.8 | Yes |
| D-Mannitol | b3599 | Mannitol phosphotransferase system, IIA/IIB/IIC components (EC 2.7.1.197) (from data) | -1.8 | Yes |
| D-Mannose | b0633 | minor lipoprotein (NCBI) | variable | |
| D-Mannose | b0758 | galactose-1-phosphate uridylyltransferase (NCBI) | -2.4 | |
| D-Mannose | b0812 | DNA protection during starvation conditions (NCBI) | variable | |
| D-Mannose | b1490 | predicted diguanylate cyclase (RefSeq) | -2.0 | |
| D-Mannose | b1579 | Qin prophage; predicted defective integrase (RefSeq) | variable | |
| D-Mannose | b1817 | fused mannose-specific PTS enzymes: IIA component/IIB component (NCBI) | -7.8 | Yes |
| D-Mannose | b1819 | mannose-specific enzyme IID component of PTS (NCBI) | -7.1 | Yes |
| D-Mannose | b2252 | hypothetical protein (NCBI) | variable | |
| D-Mannose | b2290 | aspartate aminotransferase (NCBI) | -1.8 | |
| D-Mannose | b2603 | hypothetical protein (NCBI) | variable | |
| D-Mannose | b2742 | predicted outer membrane lipoprotein (NCBI) | variable | |
| D-Mannose | b3234 | serine endoprotease, periplasmic (NCBI) | variable | |
| D-Mannose | b3472 | orf, hypothetical protein (VIMSS) | variable | |
| D-Mannose | b3516 | DNA-binding transcriptional dual regulator (NCBI) | -1.1 | |
| D-Mannose | b3529 | predicted diguanylate cyclase (RefSeq) | variable | |
| D-Mannose | b3626 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | variable | |
| D-Mannose | b3643 | ribonuclease PH (NCBI) | variable | |
| D-Mannose | b3655 | hypothetical protein (NCBI) | variable | |
| D-Mannose | b3785 | putative transport protein (VIMSS) | variable | |
| D-Mannose | b4141 | predicted transporter (NCBI) | variable | |
| D-Mannose | b4169 | N-acetylmuramoyl-l-alanine amidase II (NCBI) | variable | |
| D-Mannose | b4184 | conserved inner membrane protein (NCBI) | variable | |
| D-Mannose | b4472 | conserved membrane protein, predicted transporter (NCBI) | variable | |
| D-Mannose | b3779 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | -1.5 | |
| D-Ribose | b0334 | 2-methylcitrate dehydratase (NCBI) | -1.3 | |
| D-Ribose | b0390 | hypothetical protein (NCBI) | -1.8 | |
| D-Ribose | b0484 | copper transporter (NCBI) | -1.2 | |
| D-Ribose | b0606 | alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) | -1.4 | |
| D-Ribose | b1517 | hypothetical protein (NCBI) | -1.1 | |
| D-Ribose | b1725 | predicted phosphotransferase/kinase (NCBI) | +1.4 | |
| D-Ribose | b1854 | pyruvate kinase (NCBI) | -1.5 | |
| D-Ribose | b1878 | hypothetical protein (NCBI) | -1.5 | |
| D-Ribose | b3124 | glycerate kinase I (RefSeq) | -1.7 | |
| D-Ribose | b3248 | Maf-like protein (NCBI) | +1.3 | |
| D-Ribose | b3355 | predicted phosphoribulokinase (NCBI) | -2.8 | |
| D-Ribose | b3423 | DNA-binding transcriptional repressor (NCBI) | -2.1 | |
| D-Ribose | b3601 | DNA-binding repressor (NCBI) | -1.4 | |
| D-Ribose | b3675 | predicted inner membrane protein (NCBI) | -2.2 | |
| D-Ribose | b3740 | glucose-inhibited division protein B (NCBI) | +1.6 | |
| D-Ribose | b3748 | D-ribose pyranase [EC:5.4.99.62] (from data) | -3.1 | Yes |
| D-Ribose | b3752 | ribokinase (NCBI) | -4.2 | Yes |
| D-Ribose | b3888 | predicted acetyltransferase (NCBI) | -2.2 | |
| D-Ribose | b4014 | malate synthase (NCBI) | +1.1 | |
| D-Ribose | b4024 | aspartate kinase III (NCBI) | -1.0 | |
| D-Ribose | b4371 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | +1.2 | |
| D-Serine | b0076 | probable transcriptional activator for leuABCD operon (VIMSS) | -1.5 | |
| D-Serine | b0388 | shikimate kinase II (NCBI) | +1.7 | |
| D-Serine | b0598 | carbon starvation protein (NCBI) | -1.0 | |
| D-Serine | b0960 | orf, hypothetical protein (VIMSS) | +3.0 | |
| D-Serine | b1066 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | -1.2 | |
| D-Serine | b1333 | stress-induced protein (NCBI) | +2.1 | |
| D-Serine | b1702 | phosphoenolpyruvate synthase (NCBI) | -4.2 | Yes |
| D-Serine | b1854 | pyruvate kinase (NCBI) | +1.3 | |
| D-Serine | b2364 | DNA-binding transcriptional dual regulator (NCBI) | -3.3 | Yes |
| D-Serine | b2366 | D-serine dehydratase (NCBI) | -4.5 | Yes |
| D-Serine | b2587 | alpha-ketoglutarate transporter (NCBI) | +2.2 | |
| D-Serine | b2735 | predicted DNA-binding transcriptional regulator (RefSeq) | -5.2 | |
| D-Serine | b3124 | glycerate kinase I (RefSeq) | -3.0 | |
| D-Serine | b3244 | predicted peptidase (NCBI) | -1.1 | |
| D-Serine | b3454 | ATP-binding component of leucine transport (VIMSS) | +8.2 | |
| D-Serine | b3455 | leucine/isoleucine/valine transporter subunit (NCBI) | +8.6 | |
| D-Serine | b3456 | leucine/isoleucine/valine transporter subunit (NCBI) | +8.5 | |
| D-Serine | b3457 | leucine/isoleucine/valine transporter subunit (NCBI) | +8.2 | |
| D-Serine | b3458 | leucine transporter subunit (NCBI) | +4.9 | |
| D-Serine | b3523 | predicted transporter (NCBI) | +1.4 | |
| D-Serine | b3966 | vitamin B12/cobalamin outer membrane transporter (NCBI) | -1.3 | |
| D-Serine | b4166 | predicted Fe-S electron transport protein (NCBI) | -1.4 | |
| D-Serine | b4233 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | -1.4 | |
| D-Serine | b4235 | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | -1.0 | |
| D-Serine | b4243 | orf, hypothetical protein (VIMSS) | -3.0 | |
| D-Serine | b3438 | DNA-binding transcriptional repressor (NCBI) | -1.4 | |
| D-Serine | b3460 | leucine/isoleucine/valine transporter subunit (NCBI) | +5.9 | |
| D-Serine | b3779 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | +1.8 | |
| D-Sorbitol | b2705 | 3-ketoacyl-(acyl-carrier-protein) reductase (NCBI) | -5.4 | Yes |
| D-Sorbitol | b3292 | zinc-responsive transcriptional regulator (NCBI) | -2.0 | |
| D-Trehalose dihydrate | b1817 | fused mannose-specific PTS enzymes: IIA component/IIB component (NCBI) | -1.3 | |
| D-Trehalose dihydrate | b4240 | fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component (NCBI) | -2.4 | Yes |
| D-Trehalose dihydrate | b4241 | trehalose repressor (NCBI) | +1.3 | |
| D-Xylose | b0223 | predicted amidotransfease (NCBI) | -1.1 | |
| D-Xylose | b3564 | xylulokinase (NCBI) | -4.4 | Yes |
| D-Xylose | b3565 | xylose isomerase (NCBI) | -4.4 | Yes |
| D-Xylose | b3566 | D-xylose transporter subunit (NCBI) | -2.1 | Yes |
| D-Xylose | b3569 | DNA-binding transcriptional activator, xylose-binding (NCBI) | -4.0 | Yes |
| Dodecanol | b0221 | putative acyl-CoA dehydrogenase (EC 1.3.99.-) (VIMSS) | variable | |
| Dodecanol | b1805 | acyl-CoA synthase (NCBI) | variable | |
| Dodecanol | b2344 | long-chain fatty acid outer membrane transporter (RefSeq) | +1.1 | |
| Dodecanol | b3423 | DNA-binding transcriptional repressor (NCBI) | +4.3 | |
| Dodecanol | b3846 | fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase (NCBI) | variable | |
| Dodecanol | b4220 | predicted outer membrane protein and surface antigen (NCBI) | -1.9 | |
| Dodecanol | b4221 | hypothetical protein (NCBI) | -1.7 | |
| Dodecanol | b3438 | DNA-binding transcriptional repressor (NCBI) | variable | |
| Glycolic Acid | b0008 | transaldolase B (NCBI) | +1.2 | |
| Glycolic Acid | b0050 | hypothetical protein (NCBI) | +1.2 | |
| Glycolic Acid | b0058 | pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) | +1.1 | |
| Glycolic Acid | b0162 | orf, hypothetical protein (VIMSS) | -3.5 | |
| Glycolic Acid | b0197 | DL-methionine transporter subunit (NCBI) | -1.1 | |
| Glycolic Acid | b0198 | DL-methionine transporter subunit (NCBI) | -1.3 | |
| Glycolic Acid | b0221 | putative acyl-CoA dehydrogenase (EC 1.3.99.-) (VIMSS) | -2.0 | |
| Glycolic Acid | b0223 | predicted amidotransfease (NCBI) | -1.1 | |
| Glycolic Acid | b0279 | CP4-6 prophage; predicted protein (NCBI) | -1.4 | |
| Glycolic Acid | b0334 | 2-methylcitrate dehydratase (NCBI) | -1.5 | |
| Glycolic Acid | b0390 | hypothetical protein (NCBI) | -3.3 | |
| Glycolic Acid | b0426 | orf, hypothetical protein (VIMSS) | +1.1 | |
| Glycolic Acid | b0484 | copper transporter (NCBI) | -3.4 | |
| Glycolic Acid | b0505 | ureidoglycolate hydrolase (NCBI) | -3.1 | |
| Glycolic Acid | b0507 | glyoxylate carboligase (NCBI) | -3.7 | Yes |
| Glycolic Acid | b0508 | hydroxypyruvate isomerase (NCBI) | -4.7 | Yes |
| Glycolic Acid | b0509 | tartronate semialdehyde reductase, NADH-dependent (NCBI) | -1.4 | |
| Glycolic Acid | b0775 | biotin synthase (NCBI) | -1.8 | |
| Glycolic Acid | b0776 | 8-amino-7-oxononanoate synthase (NCBI) | -1.0 | |
| Glycolic Acid | b0777 | predicted methltransferase, enzyme of biotin synthesis (NCBI) | -1.7 | |
| Glycolic Acid | b0931 | nicotinate phosphoribosyltransferase (NCBI) | +1.4 | |
| Glycolic Acid | b0932 | aminopeptidase N (NCBI) | -1.5 | |
| Glycolic Acid | b1060 | orf, hypothetical protein (VIMSS) | -1.6 | |
| Glycolic Acid | b1249 | cardiolipin synthetase (NCBI) | -1.6 | |
| Glycolic Acid | b1725 | predicted phosphotransferase/kinase (NCBI) | +1.2 | |
| Glycolic Acid | b1805 | acyl-CoA synthase (NCBI) | -2.1 | Yes |
| Glycolic Acid | b1854 | pyruvate kinase (NCBI) | -4.7 | |
| Glycolic Acid | b1905 | ferritin iron storage protein (cytoplasmic) (NCBI) | -1.3 | |
| Glycolic Acid | b2029 | 6-phosphogluconate dehydrogenase (NCBI) | -1.7 | |
| Glycolic Acid | b2113 | putative ATPase (VIMSS) | -3.1 | |
| Glycolic Acid | b2141 | hypothetical protein (NCBI) | +1.9 | |
| Glycolic Acid | b2142 | predicted inner membrane protein (NCBI) | +1.6 | |
| Glycolic Acid | b2410 | predicted inner membrane protein (NCBI) | -1.9 | |
| Glycolic Acid | b2463 | malic enzyme (NCBI) | -2.5 | |
| Glycolic Acid | b2535 | orf, hypothetical protein (VIMSS) | +2.6 | |
| Glycolic Acid | b2587 | alpha-ketoglutarate transporter (NCBI) | -3.3 | |
| Glycolic Acid | b2707 | DNA-bindng transcriptional repressor (NCBI) | -1.8 | |
| Glycolic Acid | b2735 | predicted DNA-binding transcriptional regulator (RefSeq) | +2.7 | |
| Glycolic Acid | b2749 | conserved inner membrane protein (NCBI) | -1.6 | |
| Glycolic Acid | b2908 | proline aminopeptidase P II (NCBI) | -1.7 | |
| Glycolic Acid | b2976 | malate synthase (NCBI) | +2.5 | |
| Glycolic Acid | b2977 | hypothetical protein (NCBI) | +2.6 | |
| Glycolic Acid | b2979 | glycolate dehydrogenase, putative FAD-linked subunit (from data) | -4.3 | Yes |
| Glycolic Acid | b2980 | DNA-binding transcriptional dual regulator, glycolate-binding (NCBI) | -4.3 | Yes |
| Glycolic Acid | b3124 | glycerate kinase I (RefSeq) | -4.5 | |
| Glycolic Acid | b3127 | predicted (D)-galactarate transporter (NCBI) | -2.2 | |
| Glycolic Acid | b3156 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | -1.3 | |
| Glycolic Acid | b3248 | Maf-like protein (NCBI) | +2.6 | |
| Glycolic Acid | b3279 | putative transferase (VIMSS) | +1.9 | |
| Glycolic Acid | b3289 | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | -1.7 | |
| Glycolic Acid | b3292 | zinc-responsive transcriptional regulator (NCBI) | -1.8 | |
| Glycolic Acid | b3349 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | +2.3 | |
| Glycolic Acid | b3355 | predicted phosphoribulokinase (NCBI) | -1.2 | |
| Glycolic Acid | b3397 | ADP-ribose diphosphatase (NCBI) | +1.2 | |
| Glycolic Acid | b3401 | orf, hypothetical protein (VIMSS) | -1.1 | |
| Glycolic Acid | b3403 | phosphoenolpyruvate carboxykinase (NCBI) | -1.7 | |
| Glycolic Acid | b3423 | DNA-binding transcriptional repressor (NCBI) | -2.2 | |
| Glycolic Acid | b3432 | glycogen branching enzyme (NCBI) | -1.2 | |
| Glycolic Acid | b3454 | ATP-binding component of leucine transport (VIMSS) | -1.6 | |
| Glycolic Acid | b3455 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.5 | |
| Glycolic Acid | b3456 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.4 | |
| Glycolic Acid | b3457 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.7 | |
| Glycolic Acid | b3494 | universal stress protein UspB (NCBI) | -1.5 | |
| Glycolic Acid | b3601 | DNA-binding repressor (NCBI) | -3.5 | |
| Glycolic Acid | b3603 | (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP (from data) | -2.2 | |
| Glycolic Acid | b3675 | predicted inner membrane protein (NCBI) | -1.6 | |
| Glycolic Acid | b3740 | glucose-inhibited division protein B (NCBI) | +3.1 | |
| Glycolic Acid | b3746 | putative 2-component regulator (VIMSS) | -1.2 | |
| Glycolic Acid | b3780 | ATP-dependent RNA helicase (NCBI) | -1.6 | |
| Glycolic Acid | b3807 | frataxin-like protein (NCBI) | -2.8 | |
| Glycolic Acid | b3908 | superoxide dismutase, manganese (VIMSS) | -1.9 | |
| Glycolic Acid | b3934 | DNA-binding transcriptional dual regulator (NCBI) | -2.4 | |
| Glycolic Acid | b4014 | malate synthase (NCBI) | +3.0 | |
| Glycolic Acid | b4015 | isocitrate lyase (NCBI) | +1.8 | |
| Glycolic Acid | b4020 | predicted transporter (NCBI) | -3.0 | |
| Glycolic Acid | b4024 | aspartate kinase III (NCBI) | -1.4 | |
| Glycolic Acid | b4067 | acetate permease (NCBI) | -1.5 | |
| Glycolic Acid | b4069 | acetyl-coenzyme A synthetase (NCBI) | -2.3 | |
| Glycolic Acid | b4190 | predicted hydrolase (NCBI) | -1.9 | |
| Glycolic Acid | b4260 | leucyl aminopeptidase (NCBI) | -1.7 | |
| Glycolic Acid | b4371 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | +1.4 | |
| Glycolic Acid | b4390 | probable nadAB transcriptional regulator (VIMSS) | -1.7 | |
| Glycolic Acid | b4403 | predicted rRNA methyltransferase (NCBI) | +1.1 | |
| Glycolic Acid | b4467 | glycolate oxidase iron-sulfur subunit (NCBI) | -3.6 | Yes |
| Glycolic Acid | b4468 | glycolate oxidase FAD binding subunit (NCBI) | -4.4 | Yes |
| Glycolic Acid | b3460 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.2 | |
| Glycolic Acid | b3779 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | -1.6 | |
| Glycolic Acid | b4256 | predicted acetyltransferase (NCBI) | -1.4 | |
| Guanosine | b0122 | orf, hypothetical protein (VIMSS) | +1.7 | |
| Guanosine | b1037 | outer membrane lipoprotein (NCBI) | +2.8 | |
| Guanosine | b1039 | predicted transport protein (NCBI) | +1.6 | |
| Guanosine | b1040 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | +2.5 | |
| Guanosine | b1041 | curlin nucleator protein, minor subunit in curli complex (NCBI) | +2.3 | |
| Guanosine | b1042 | cryptic curlin major subunit (NCBI) | +2.6 | |
| Guanosine | b1222 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | +2.1 | |
| Guanosine | b1341 | orf, hypothetical protein (VIMSS) | +2.0 | |
| Guanosine | b2101 | predicted DNA-binding transcriptional regulator (NCBI) | +2.0 | |
| Guanosine | b2127 | DNA-binding transcriptional regulator (NCBI) | +4.0 | |
| Guanosine | b2216 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | +1.8 | |
| Guanosine | b2218 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | +2.1 | |
| Guanosine | b2464 | transaldolase A (NCBI) | +1.1 | |
| Guanosine | b2465 | transketolase 2, thiamin-binding (NCBI) | +1.7 | |
| Guanosine | b2749 | conserved inner membrane protein (NCBI) | +1.9 | |
| Guanosine | b2964 | transport of nucleosides, permease protein (VIMSS) | -1.2 | |
| Guanosine | b3752 | ribokinase (NCBI) | +2.5 | Yes |
| Guanosine | b3934 | DNA-binding transcriptional dual regulator (NCBI) | +10.1 | |
| Guanosine | b4381 | deoxyribose-phosphate aldolase (NCBI) | +3.3 | |
| Guanosine | b4383 | phosphopentomutase (NCBI) | -3.0 | |
| Guanosine | b4384 | purine nucleoside phosphorylase (NCBI) | -2.5 | |
| Guanosine | b1663 | multidrug efflux protein NorM (NCBI) | +1.6 | |
| HMW_DNA_from_Lysinibacillus_FW301-JW8 | b3752 | ribokinase (NCBI) | +1.6 | |
| HMW_DNA_from_Lysinibacillus_FW301-JW8 | b3926 | glycerol kinase (NCBI) | -3.1 | |
| HMW_DNA_from_Lysinibacillus_FW301-JW8 | b3927 | glycerol facilitator (NCBI) | -2.2 | |
| HMW_DNA_from_Pseudomonas_EB271-B4-1 | b3752 | ribokinase (NCBI) | +1.5 | |
| HMW_DNA_from_Pseudomonas_EB271-B4-1 | b3926 | glycerol kinase (NCBI) | -2.5 | |
| HMW_DNA_from_Pseudomonas_EB271-B4-1 | b3927 | glycerol facilitator (NCBI) | -1.7 | |
| Inosine | b1037 | outer membrane lipoprotein (NCBI) | +3.2 | |
| Inosine | b1039 | predicted transport protein (NCBI) | +1.6 | |
| Inosine | b1040 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | +3.0 | |
| Inosine | b1041 | curlin nucleator protein, minor subunit in curli complex (NCBI) | +2.4 | |
| Inosine | b1042 | cryptic curlin major subunit (NCBI) | +2.6 | |
| Inosine | b1341 | orf, hypothetical protein (VIMSS) | +1.9 | |
| Inosine | b2101 | predicted DNA-binding transcriptional regulator (NCBI) | +5.9 | |
| Inosine | b2127 | DNA-binding transcriptional regulator (NCBI) | +4.1 | |
| Inosine | b2216 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | +1.5 | |
| Inosine | b2218 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | +1.9 | |
| Inosine | b2475 | hypothetical protein (NCBI) | -1.6 | |
| Inosine | b3752 | ribokinase (NCBI) | +1.5 | Yes |
| Inosine | b3934 | DNA-binding transcriptional dual regulator (NCBI) | +9.2 | Yes |
| Inosine | b4380 | hypothetical protein (NCBI) | +1.5 | |
| Inosine | b4383 | phosphopentomutase (NCBI) | -2.7 | Yes |
| Inosine | b4384 | purine nucleoside phosphorylase (NCBI) | -3.1 | Yes |
| Inosine | b1660 | predicted transporter (NCBI) | -1.8 | Yes |
| Inosine | b1663 | multidrug efflux protein NorM (NCBI) | +1.6 | |
| L-Fucose | b0963 | methylglyoxal synthase (VIMSS) | -1.7 | |
| L-Fucose | b1415 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | -2.3 | |
| L-Fucose | b2392 | manganese transport protein MntH (NCBI) | -1.5 | |
| L-Fucose | b2799 | L-1,2-propanediol oxidoreductase (NCBI) | -1.9 | |
| L-Fucose | b2800 | L-fuculose phosphate aldolase (NCBI) | -4.1 | Yes |
| L-Fucose | b2801 | L-fucose transporter (NCBI) | -1.3 | Yes |
| L-Fucose | b2802 | L-fucose isomerase (NCBI) | -1.8 | Yes |
| L-Fucose | b2803 | L-fuculokinase (NCBI) | -2.2 | Yes |
| L-Fucose | b2805 | DNA-binding transcriptional activator (NCBI) | -1.8 | Yes |
| L-Fucose | b3355 | predicted phosphoribulokinase (NCBI) | -1.2 | |
| L-Fucose | b3397 | ADP-ribose diphosphatase (NCBI) | -1.1 | |
| L-Fucose | b3605 | L-lactate dehydrogenase, FMN-linked (NCBI) | -1.1 | Yes |
| L-Fucose | b3572 | valine--pyruvate transaminase (NCBI) | -1.7 | |
| L-Malic acid disodium salt monohydrate | b0050 | hypothetical protein (NCBI) | +1.1 | |
| L-Malic acid disodium salt monohydrate | b0223 | predicted amidotransfease (NCBI) | -1.8 | |
| L-Malic acid disodium salt monohydrate | b0334 | 2-methylcitrate dehydratase (NCBI) | -1.4 | |
| L-Malic acid disodium salt monohydrate | b0382 | hypothetical protein (NCBI) | +2.1 | |
| L-Malic acid disodium salt monohydrate | b0390 | hypothetical protein (NCBI) | -3.5 | |
| L-Malic acid disodium salt monohydrate | b0484 | copper transporter (NCBI) | -1.3 | |
| L-Malic acid disodium salt monohydrate | b0563 | DLP12 prophage; predicted protein (RefSeq) | -1.3 | |
| L-Malic acid disodium salt monohydrate | b0584 | iron-enterobactin outer membrane transporter (NCBI) | -1.5 | |
| L-Malic acid disodium salt monohydrate | b0598 | carbon starvation protein (NCBI) | -1.4 | |
| L-Malic acid disodium salt monohydrate | b0774 | adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) | -1.7 | |
| L-Malic acid disodium salt monohydrate | b0775 | biotin synthase (NCBI) | -2.1 | |
| L-Malic acid disodium salt monohydrate | b0776 | 8-amino-7-oxononanoate synthase (NCBI) | -1.7 | |
| L-Malic acid disodium salt monohydrate | b0777 | predicted methltransferase, enzyme of biotin synthesis (NCBI) | -1.9 | |
| L-Malic acid disodium salt monohydrate | b1060 | orf, hypothetical protein (VIMSS) | -1.6 | |
| L-Malic acid disodium salt monohydrate | b1114 | transcription-repair coupling factor (NCBI) | +1.1 | |
| L-Malic acid disodium salt monohydrate | b1162 | predicted DNA-binding transcriptional regulator (NCBI) | -1.8 | |
| L-Malic acid disodium salt monohydrate | b1198 | fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq) | +1.6 | |
| L-Malic acid disodium salt monohydrate | b1200 | putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS) | +1.3 | |
| L-Malic acid disodium salt monohydrate | b1201 | putative sensor-type regulator (VIMSS) | +1.5 | |
| L-Malic acid disodium salt monohydrate | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | +2.5 | |
| L-Malic acid disodium salt monohydrate | b1479 | NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) | -2.8 | |
| L-Malic acid disodium salt monohydrate | b1584 | spermidine N1-acetyltransferase (NCBI) | -2.4 | |
| L-Malic acid disodium salt monohydrate | b1844 | exodeoxyribonuclease X (NCBI) | -1.9 | |
| L-Malic acid disodium salt monohydrate | b1854 | pyruvate kinase (NCBI) | -1.7 | |
| L-Malic acid disodium salt monohydrate | b1905 | ferritin iron storage protein (cytoplasmic) (NCBI) | -1.4 | |
| L-Malic acid disodium salt monohydrate | b2151 | DNA-binding transcriptional repressor (NCBI) | -2.0 | |
| L-Malic acid disodium salt monohydrate | b2463 | malic enzyme (NCBI) | -1.2 | Yes |
| L-Malic acid disodium salt monohydrate | b2535 | orf, hypothetical protein (VIMSS) | +1.4 | |
| L-Malic acid disodium salt monohydrate | b2587 | alpha-ketoglutarate transporter (NCBI) | -2.8 | |
| L-Malic acid disodium salt monohydrate | b2790 | flavodoxin (NCBI) | -1.8 | |
| L-Malic acid disodium salt monohydrate | b2810 | cysteine sulfinate desulfinase (NCBI) | +1.1 | |
| L-Malic acid disodium salt monohydrate | b2812 | hypothetical protein (NCBI) | +1.1 | |
| L-Malic acid disodium salt monohydrate | b3292 | zinc-responsive transcriptional regulator (NCBI) | -1.8 | |
| L-Malic acid disodium salt monohydrate | b3346 | orf, hypothetical protein (VIMSS) | +1.4 | |
| L-Malic acid disodium salt monohydrate | b3403 | phosphoenolpyruvate carboxykinase (NCBI) | -1.7 | |
| L-Malic acid disodium salt monohydrate | b3412 | carboxylesterase of pimeloyl-CoA synthesis (NCBI) | -1.7 | |
| L-Malic acid disodium salt monohydrate | b3423 | DNA-binding transcriptional repressor (NCBI) | -1.8 | |
| L-Malic acid disodium salt monohydrate | b3528 | C4 dicarboxylate/orotate:H+ symporter (DctA) (from data) | -4.3 | Yes |
| L-Malic acid disodium salt monohydrate | b3601 | DNA-binding repressor (NCBI) | -2.1 | |
| L-Malic acid disodium salt monohydrate | b3675 | predicted inner membrane protein (NCBI) | -1.4 | |
| L-Malic acid disodium salt monohydrate | b3740 | glucose-inhibited division protein B (NCBI) | +2.5 | |
| L-Malic acid disodium salt monohydrate | b3752 | ribokinase (NCBI) | +3.0 | |
| L-Malic acid disodium salt monohydrate | b3807 | frataxin-like protein (NCBI) | -1.5 | |
| L-Malic acid disodium salt monohydrate | b3888 | predicted acetyltransferase (NCBI) | +1.4 | |
| L-Malic acid disodium salt monohydrate | b3926 | glycerol kinase (NCBI) | +1.3 | |
| L-Malic acid disodium salt monohydrate | b3934 | DNA-binding transcriptional dual regulator (NCBI) | -1.3 | |
| L-Malic acid disodium salt monohydrate | b3995 | stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) | +1.4 | |
| L-Malic acid disodium salt monohydrate | b4015 | isocitrate lyase (NCBI) | +1.4 | |
| L-Malic acid disodium salt monohydrate | b4039 | chorismate lyase (VIMSS) | -1.0 | |
| L-Malic acid disodium salt monohydrate | b4049 | tRNA-dihydrouridine synthase A (RefSeq) | +1.2 | |
| L-Malic acid disodium salt monohydrate | b4054 | tyrosine aminotransferase, tyrosine-repressible, PLP-dependent (NCBI) | -1.4 | |
| L-Malic acid disodium salt monohydrate | b4124 | DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) | -4.2 | Yes |
| L-Malic acid disodium salt monohydrate | b4125 | sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) | -4.4 | |
| L-Malic acid disodium salt monohydrate | b4371 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | +1.3 | |
| L-Malic acid disodium salt monohydrate | b4395 | phosphoglycerate mutase (NCBI) | -1.9 | |
| L-Malic acid disodium salt monohydrate | b3572 | valine--pyruvate transaminase (NCBI) | -1.3 | |
| L-Malic acid disodium salt monohydrate | b3779 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | -1.4 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b0120 | S-adenosylmethionine decarboxylase proenzyme (NCBI) | +2.0 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b0121 | spermidine synthase (NCBI) | +2.4 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1037 | outer membrane lipoprotein (NCBI) | +5.6 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1039 | predicted transport protein (NCBI) | +1.5 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1040 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | +5.2 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1041 | curlin nucleator protein, minor subunit in curli complex (NCBI) | +5.2 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1042 | cryptic curlin major subunit (NCBI) | +3.9 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1128 | orf, hypothetical protein (VIMSS) | +1.0 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1284 | predicted DNA-binding transcriptional regulator (NCBI) | +2.3 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1285 | modulator of Rnase II stability (NCBI) | -2.2 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1341 | orf, hypothetical protein (VIMSS) | +3.8 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b1914 | response regulator (NCBI) | +1.2 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b2067 | predicted diguanylate cyclase, GGDEF domain signalling protein (NCBI) | +1.8 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b2127 | DNA-binding transcriptional regulator (NCBI) | +6.2 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b2216 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | +3.8 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b2218 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | +3.5 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b2480 | thioredoxin-dependent thiol peroxidase (NCBI) | +1.3 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b2587 | alpha-ketoglutarate transporter (NCBI) | +1.3 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b2786 | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | +1.1 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b3456 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.2 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b3457 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.2 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b3643 | ribonuclease PH (NCBI) | +1.5 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b3752 | ribokinase (NCBI) | +3.8 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b3926 | glycerol kinase (NCBI) | -4.1 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b3927 | glycerol facilitator (NCBI) | -2.1 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b3934 | DNA-binding transcriptional dual regulator (NCBI) | +1.4 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b4109 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | +1.5 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b4110 | orf, hypothetical protein (VIMSS) | +1.5 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b4141 | predicted transporter (NCBI) | +1.3 | |
| LMW_DNA_from_Lysinibacillus_FW301-JW8 | b3779 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | -1.5 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b0120 | S-adenosylmethionine decarboxylase proenzyme (NCBI) | +2.1 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b0121 | spermidine synthase (NCBI) | +2.3 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1037 | outer membrane lipoprotein (NCBI) | +4.9 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1039 | predicted transport protein (NCBI) | +1.7 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1040 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | +4.2 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1041 | curlin nucleator protein, minor subunit in curli complex (NCBI) | +4.7 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1042 | cryptic curlin major subunit (NCBI) | +3.7 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1128 | orf, hypothetical protein (VIMSS) | +1.2 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1284 | predicted DNA-binding transcriptional regulator (NCBI) | +2.1 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1285 | modulator of Rnase II stability (NCBI) | -1.6 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1299 | DNA-binding transcriptional repressor (NCBI) | +1.2 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b1341 | orf, hypothetical protein (VIMSS) | +3.7 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b2067 | predicted diguanylate cyclase, GGDEF domain signalling protein (NCBI) | +1.8 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b2127 | DNA-binding transcriptional regulator (NCBI) | +5.5 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b2216 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | +3.4 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b2218 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | +3.3 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b2480 | thioredoxin-dependent thiol peroxidase (NCBI) | +1.4 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b2587 | alpha-ketoglutarate transporter (NCBI) | +1.2 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b2603 | hypothetical protein (NCBI) | -1.4 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b2786 | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | +1.0 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b3456 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.4 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b3457 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.2 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b3643 | ribonuclease PH (NCBI) | +1.5 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b3752 | ribokinase (NCBI) | +4.2 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b3926 | glycerol kinase (NCBI) | -3.3 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b3927 | glycerol facilitator (NCBI) | -2.0 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b3934 | DNA-binding transcriptional dual regulator (NCBI) | +1.4 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b4109 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | +1.4 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b4110 | orf, hypothetical protein (VIMSS) | +1.5 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b4141 | predicted transporter (NCBI) | +1.3 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b4169 | N-acetylmuramoyl-l-alanine amidase II (NCBI) | +1.0 | |
| LMW_DNA_from_Pseudomonas_EB271-B4-1 | b3779 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | -1.4 | |
| N-Acetyl-D-Glucosamine | b0133 | pantoate--beta-alanine ligase (NCBI) | -1.7 | |
| N-Acetyl-D-Glucosamine | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | -1.4 | |
| N-Acetyl-D-Glucosamine | b0679 | fused N-acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components (NCBI) | -1.2 | |
| N-Acetyl-D-Glucosamine | b3459 | hypothetical protein (NCBI) | -1.3 | |
| Potassium acetate | b0197 | DL-methionine transporter subunit (NCBI) | -1.4 | |
| Potassium acetate | b0382 | hypothetical protein (NCBI) | +1.8 | |
| Potassium acetate | b0390 | hypothetical protein (NCBI) | -4.4 | |
| Potassium acetate | b0584 | iron-enterobactin outer membrane transporter (NCBI) | -1.5 | |
| Potassium acetate | b1120 | deacetylase of acs and cheY, regulates chemotaxis (NCBI) | -2.0 | Yes |
| Potassium acetate | b1333 | stress-induced protein (NCBI) | -3.3 | |
| Potassium acetate | b1517 | hypothetical protein (NCBI) | -1.3 | |
| Potassium acetate | b1702 | phosphoenolpyruvate synthase (NCBI) | -4.9 | |
| Potassium acetate | b1871 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | -1.6 | |
| Potassium acetate | b1896 | trehalose-6-phosphate synthase (NCBI) | -1.4 | |
| Potassium acetate | b2463 | malic enzyme (NCBI) | -2.9 | |
| Potassium acetate | b2790 | flavodoxin (NCBI) | -3.6 | Yes |
| Potassium acetate | b3292 | zinc-responsive transcriptional regulator (NCBI) | -3.1 | |
| Potassium acetate | b3425 | thiosulfate sulfurtransferase (NCBI) | -1.5 | |
| Potassium acetate | b3457 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.3 | |
| Potassium acetate | b3675 | predicted inner membrane protein (NCBI) | -3.5 | |
| Potassium acetate | b3676 | conserved inner membrane protein (NCBI) | -3.6 | |
| Potassium acetate | b3740 | glucose-inhibited division protein B (NCBI) | +1.6 | |
| Potassium acetate | b3752 | ribokinase (NCBI) | +2.2 | |
| Potassium acetate | b4015 | isocitrate lyase (NCBI) | -4.7 | Yes |
| Potassium acetate | b4016 | bifunctional isocitrate dehydrogenase kinase/phosphatase protein (NCBI) | +1.5 | Yes |
| Potassium acetate | b4069 | acetyl-coenzyme A synthetase (NCBI) | -2.1 | Yes |
| Potassium acetate | b4141 | predicted transporter (NCBI) | +1.1 | |
| Potassium acetate | b4190 | predicted hydrolase (NCBI) | -2.4 | |
| Potassium acetate | b4391 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | +1.3 | |
| Potassium acetate | b4396 | DNA-binding transcriptional activator (NCBI) | -1.9 | |
| Potassium acetate | b3779 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | -1.8 | Yes |
| Potassium acetate | b3996 | NADH pyrophosphatase (NCBI) | -1.0 | |
| Potassium acetate | b4256 | predicted acetyltransferase (NCBI) | -1.5 | |
| Sodium D,L-Lactate | b0484 | copper transporter (NCBI) | -1.2 | |
| Sodium D,L-Lactate | b1702 | phosphoenolpyruvate synthase (NCBI) | -4.7 | Yes |
| Sodium D,L-Lactate | b1827 | predicted DNA-binding transcriptional regulator (NCBI) | -2.8 | |
| Sodium D,L-Lactate | b3603 | (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP (from data) | -3.8 | Yes |
| Sodium D,L-Lactate | b3604 | DNA-binding transcriptional repressor (NCBI) | -3.1 | Yes |
| Sodium D,L-Lactate | b3572 | valine--pyruvate transaminase (NCBI) | -1.9 | |
| Sodium D-Lactate | b0334 | 2-methylcitrate dehydratase (NCBI) | -2.0 | |
| Sodium D-Lactate | b0390 | hypothetical protein (NCBI) | -2.1 | |
| Sodium D-Lactate | b1066 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | +1.1 | |
| Sodium D-Lactate | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | +1.8 | Yes |
| Sodium D-Lactate | b1517 | hypothetical protein (NCBI) | -1.3 | |
| Sodium D-Lactate | b1702 | phosphoenolpyruvate synthase (NCBI) | -2.9 | Yes |
| Sodium D-Lactate | b2133 | D-lactate dehydrogenase, FAD-binding, NADH independent (NCBI) | -1.4 | Yes |
| Sodium D-Lactate | b2392 | manganese transport protein MntH (NCBI) | -1.5 | |
| Sodium D-Lactate | b3603 | (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP (from data) | -3.4 | Yes |
| Sodium D-Lactate | b3604 | DNA-binding transcriptional repressor (NCBI) | -1.6 | Yes |
| Sodium D-Lactate | b3572 | valine--pyruvate transaminase (NCBI) | -1.5 | |
| Sodium acetate | b0382 | hypothetical protein (NCBI) | +6.1 | |
| Sodium acetate | b0388 | shikimate kinase II (NCBI) | +1.5 | |
| Sodium acetate | b0390 | hypothetical protein (NCBI) | -3.2 | |
| Sodium acetate | b0583 | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex (NCBI) | -1.2 | |
| Sodium acetate | b0966 | DNA-binding protein, hemimethylated (RefSeq) | -1.3 | |
| Sodium acetate | b1188 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +1.9 | |
| Sodium acetate | b1191 | orf, hypothetical protein (VIMSS) | +1.8 | |
| Sodium acetate | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | +1.6 | |
| Sodium acetate | b1702 | phosphoenolpyruvate synthase (NCBI) | -4.2 | |
| Sodium acetate | b1783 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +1.7 | |
| Sodium acetate | b1784 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +1.6 | |
| Sodium acetate | b2101 | predicted DNA-binding transcriptional regulator (NCBI) | +1.4 | |
| Sodium acetate | b2410 | predicted inner membrane protein (NCBI) | -2.1 | |
| Sodium acetate | b2463 | malic enzyme (NCBI) | -2.3 | |
| Sodium acetate | b2790 | flavodoxin (NCBI) | -1.7 | |
| Sodium acetate | b3131 | DNA-binding transcriptional dual regulator (NCBI) | +1.8 | |
| Sodium acetate | b3146 | predicted methyltransferase (NCBI) | +1.4 | |
| Sodium acetate | b3456 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.7 | |
| Sodium acetate | b3457 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.6 | |
| Sodium acetate | b3512 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | +1.8 | |
| Sodium acetate | b3516 | DNA-binding transcriptional dual regulator (NCBI) | +1.4 | |
| Sodium acetate | b3752 | ribokinase (NCBI) | +4.1 | |
| Sodium acetate | b3995 | stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) | +1.0 | |
| Sodium acetate | b4014 | malate synthase (NCBI) | -2.3 | |
| Sodium acetate | b4015 | isocitrate lyase (NCBI) | -4.5 | |
| Sodium acetate | b4016 | bifunctional isocitrate dehydrogenase kinase/phosphatase protein (NCBI) | +1.2 | |
| Sodium acetate | b4141 | predicted transporter (NCBI) | +1.5 | |
| Sodium acetate | b4217 | orf, hypothetical protein (VIMSS) | +1.1 | |
| Sodium acetate | b4396 | DNA-binding transcriptional activator (NCBI) | -1.8 | |
| Sodium acetate | b3460 | leucine/isoleucine/valine transporter subunit (NCBI) | -1.4 | |
| Sodium acetate | b3779 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | -1.7 | |
| Sodium acetate | b4484 | periplasmic protein combats stress (NCBI) | +1.3 | |
| Sodium pyruvate | b1702 | phosphoenolpyruvate synthase (NCBI) | -4.9 | Yes |
| Sodium pyruvate | b1827 | predicted DNA-binding transcriptional regulator (NCBI) | -4.1 | |
| Sodium pyruvate | b1871 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | -1.6 | |
| Sodium pyruvate | b2125 | orf, hypothetical protein (VIMSS) | -2.2 | Yes |
| Sodium pyruvate | b2126 | predicted sensory kinase in two-component system with YehT (NCBI) | -1.4 | Yes |
| Sodium pyruvate | b4354 | putative carbon starvation protein (VIMSS) | -1.6 | Yes |
| Sodium pyruvate | b3572 | valine--pyruvate transaminase (NCBI) | -2.3 | |
| Sodium pyruvate | b4488 | no description | -1.0 | |
| Sodium succinate dibasic hexahydrate | b0223 | predicted amidotransfease (NCBI) | -1.9 | |
| Sodium succinate dibasic hexahydrate | b0382 | hypothetical protein (NCBI) | +2.3 | |
| Sodium succinate dibasic hexahydrate | b0390 | hypothetical protein (NCBI) | -3.3 | |
| Sodium succinate dibasic hexahydrate | b0484 | copper transporter (NCBI) | -2.1 | |
| Sodium succinate dibasic hexahydrate | b0563 | DLP12 prophage; predicted protein (RefSeq) | -1.1 | |
| Sodium succinate dibasic hexahydrate | b0774 | adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) | -1.9 | Yes |
| Sodium succinate dibasic hexahydrate | b0775 | biotin synthase (NCBI) | -3.2 | |
| Sodium succinate dibasic hexahydrate | b0776 | 8-amino-7-oxononanoate synthase (NCBI) | -2.0 | |
| Sodium succinate dibasic hexahydrate | b0777 | predicted methltransferase, enzyme of biotin synthesis (NCBI) | -1.3 | |
| Sodium succinate dibasic hexahydrate | b1198 | fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq) | +1.7 | |
| Sodium succinate dibasic hexahydrate | b1200 | putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS) | +1.3 | |
| Sodium succinate dibasic hexahydrate | b1201 | putative sensor-type regulator (VIMSS) | +1.4 | |
| Sodium succinate dibasic hexahydrate | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | +1.9 | |
| Sodium succinate dibasic hexahydrate | b1479 | NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) | -3.2 | |
| Sodium succinate dibasic hexahydrate | b1584 | spermidine N1-acetyltransferase (NCBI) | -1.4 | |
| Sodium succinate dibasic hexahydrate | b1612 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | -1.8 | |
| Sodium succinate dibasic hexahydrate | b1844 | exodeoxyribonuclease X (NCBI) | -1.6 | |
| Sodium succinate dibasic hexahydrate | b1854 | pyruvate kinase (NCBI) | -1.8 | |
| Sodium succinate dibasic hexahydrate | b2148 | beta-methylgalactoside transporter inner membrane component (NCBI) | -1.0 | Yes |
| Sodium succinate dibasic hexahydrate | b2151 | DNA-binding transcriptional repressor (NCBI) | -1.8 | Yes |
| Sodium succinate dibasic hexahydrate | b2463 | malic enzyme (NCBI) | -1.6 | Yes |
| Sodium succinate dibasic hexahydrate | b2587 | alpha-ketoglutarate transporter (NCBI) | -3.3 | |
| Sodium succinate dibasic hexahydrate | b2810 | cysteine sulfinate desulfinase (NCBI) | +1.1 | |
| Sodium succinate dibasic hexahydrate | b2812 | hypothetical protein (NCBI) | +1.0 | |
| Sodium succinate dibasic hexahydrate | b3157 | predicted lipid carrier protein (NCBI) | +1.6 | |
| Sodium succinate dibasic hexahydrate | b3232 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | -3.7 | |
| Sodium succinate dibasic hexahydrate | b3248 | Maf-like protein (NCBI) | +1.6 | |
| Sodium succinate dibasic hexahydrate | b3403 | phosphoenolpyruvate carboxykinase (NCBI) | -2.5 | Yes |
| Sodium succinate dibasic hexahydrate | b3412 | carboxylesterase of pimeloyl-CoA synthesis (NCBI) | -2.3 | |
| Sodium succinate dibasic hexahydrate | b3423 | DNA-binding transcriptional repressor (NCBI) | -2.6 | |
| Sodium succinate dibasic hexahydrate | b3528 | C4 dicarboxylate/orotate:H+ symporter (DctA) (from data) | -3.8 | Yes |
| Sodium succinate dibasic hexahydrate | b3601 | DNA-binding repressor (NCBI) | -1.6 | |
| Sodium succinate dibasic hexahydrate | b3675 | predicted inner membrane protein (NCBI) | -2.2 | |
| Sodium succinate dibasic hexahydrate | b3676 | conserved inner membrane protein (NCBI) | -2.2 | |
| Sodium succinate dibasic hexahydrate | b3740 | glucose-inhibited division protein B (NCBI) | +1.7 | |
| Sodium succinate dibasic hexahydrate | b3752 | ribokinase (NCBI) | +2.8 | |
| Sodium succinate dibasic hexahydrate | b3807 | frataxin-like protein (NCBI) | -1.5 | |
| Sodium succinate dibasic hexahydrate | b3926 | glycerol kinase (NCBI) | +1.4 | |
| Sodium succinate dibasic hexahydrate | b3934 | DNA-binding transcriptional dual regulator (NCBI) | -1.3 | |
| Sodium succinate dibasic hexahydrate | b4014 | malate synthase (NCBI) | +1.1 | |
| Sodium succinate dibasic hexahydrate | b4015 | isocitrate lyase (NCBI) | +1.3 | |
| Sodium succinate dibasic hexahydrate | b4054 | tyrosine aminotransferase, tyrosine-repressible, PLP-dependent (NCBI) | -1.2 | |
| Sodium succinate dibasic hexahydrate | b4124 | DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) | -4.0 | |
| Sodium succinate dibasic hexahydrate | b4125 | sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) | -4.0 | |
| Uridine | b0964 | hypothetical protein (NCBI) | -1.8 | |
| Uridine | b1037 | outer membrane lipoprotein (NCBI) | +2.0 | |
| Uridine | b1041 | curlin nucleator protein, minor subunit in curli complex (NCBI) | +1.5 | |
| Uridine | b1042 | cryptic curlin major subunit (NCBI) | +1.2 | |
| Uridine | b1188 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.6 | |
| Uridine | b1341 | orf, hypothetical protein (VIMSS) | +1.5 | |
| Uridine | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | -1.9 | |
| Uridine | b1687 | predicted FAD-linked oxidoreductase (NCBI) | -1.2 | |
| Uridine | b1783 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.7 | |
| Uridine | b1784 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.5 | |
| Uridine | b1836 | orf, hypothetical protein (VIMSS) | -1.6 | |
| Uridine | b2127 | DNA-binding transcriptional regulator (NCBI) | +1.9 | |
| Uridine | b2143 | cytidine deaminase (NCBI) | +1.2 | Yes |
| Uridine | b2475 | hypothetical protein (NCBI) | -1.2 | |
| Uridine | b2964 | transport of nucleosides, permease protein (VIMSS) | -1.4 | |
| Uridine | b3346 | orf, hypothetical protein (VIMSS) | -1.1 | |
| Uridine | b3831 | uridine phosphorylase (NCBI) | -3.7 | Yes |
| Uridine | b3934 | DNA-binding transcriptional dual regulator (NCBI) | +8.2 | |
| Uridine | b4383 | phosphopentomutase (NCBI) | -3.5 | Yes |
| Uridine | b4395 | phosphoglycerate mutase (NCBI) | -1.7 | |
| Ying_AminoAcid20 | b0120 | S-adenosylmethionine decarboxylase proenzyme (NCBI) | -1.8 | |
| Ying_AminoAcid20 | b0121 | spermidine synthase (NCBI) | -2.2 | |
| Ying_AminoAcid20 | b0382 | hypothetical protein (NCBI) | +1.2 | |
| Ying_AminoAcid20 | b0427 | putative transport protein (VIMSS) | -1.4 | |
| Ying_AminoAcid20 | b1014 | fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (NCBI) | -1.3 | Yes |
| Ying_AminoAcid20 | b1015 | proline:sodium symporter (NCBI) | -1.4 | Yes |
| Ying_AminoAcid20 | b1188 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +1.4 | |
| Ying_AminoAcid20 | b1190 | alanine racemase (NCBI) | -1.7 | |
| Ying_AminoAcid20 | b1285 | modulator of Rnase II stability (NCBI) | -1.5 | |
| Ying_AminoAcid20 | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | +1.7 | |
| Ying_AminoAcid20 | b1611 | fumarate hydratase (NCBI) | -1.6 | Yes |
| Ying_AminoAcid20 | b1680 | selenocysteine lyase (NCBI) | -1.5 | |
| Ying_AminoAcid20 | b1681 | component of SufBCD complex (NCBI) | -1.4 | |
| Ying_AminoAcid20 | b1682 | cysteine desulfurase ATPase component (NCBI) | -1.5 | |
| Ying_AminoAcid20 | b1683 | orf, hypothetical protein (VIMSS) | -1.2 | |
| Ying_AminoAcid20 | b1783 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +1.4 | |
| Ying_AminoAcid20 | b1821 | orf, hypothetical protein (VIMSS) | -3.3 | |
| Ying_AminoAcid20 | b1878 | hypothetical protein (NCBI) | -1.5 | |
| Ying_AminoAcid20 | b2584 | fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit (NCBI) | -3.1 | |
| Ying_AminoAcid20 | b3232 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | -1.3 | |
| Ying_AminoAcid20 | b3601 | DNA-binding repressor (NCBI) | -2.0 | |
| Ying_AminoAcid20 | b3708 | tryptophanase (VIMSS) | -1.6 | |
| Ying_AminoAcid20 | b3709 | tryptophan transporter of low affinity (NCBI) | -1.0 | |
| Ying_AminoAcid20 | b4039 | chorismate lyase (VIMSS) | -1.2 | |
| Ying_AminoAcid20 | b4208 | D-alanine/D-serine/glycine transporter (NCBI) | -2.3 | |
| Ying_Nucleobase14 | b0197 | DL-methionine transporter subunit (NCBI) | +1.1 | |
| Ying_Nucleobase14 | b0223 | predicted amidotransfease (NCBI) | -1.3 | |
| Ying_Nucleobase14 | b0460 | modulator of gene expression, with H-NS (NCBI) | -3.1 | |
| Ying_Nucleobase14 | b0469 | adenine phosphoribosyltransferase (NCBI) | -1.2 | |
| Ying_Nucleobase14 | b0481 | hypothetical protein (NCBI) | variable | |
| Ying_Nucleobase14 | b0852 | ribosomal protein S6 modification protein (NCBI) | +1.7 | |
| Ying_Nucleobase14 | b0863 | arginine transporter subunit (NCBI) | -2.0 | |
| Ying_Nucleobase14 | b0964 | hypothetical protein (NCBI) | -1.8 | |
| Ying_Nucleobase14 | b1037 | outer membrane lipoprotein (NCBI) | +1.4 | |
| Ying_Nucleobase14 | b1040 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | +2.0 | |
| Ying_Nucleobase14 | b1042 | cryptic curlin major subunit (NCBI) | +1.2 | |
| Ying_Nucleobase14 | b1188 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -3.5 | |
| Ying_Nucleobase14 | b1190 | alanine racemase (NCBI) | +3.2 | |
| Ying_Nucleobase14 | b1285 | modulator of Rnase II stability (NCBI) | -4.3 | |
| Ying_Nucleobase14 | b1341 | orf, hypothetical protein (VIMSS) | +1.5 | |
| Ying_Nucleobase14 | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | -1.7 | |
| Ying_Nucleobase14 | b1489 | putative enzyme (VIMSS) | -1.1 | |
| Ying_Nucleobase14 | b1687 | predicted FAD-linked oxidoreductase (NCBI) | -1.1 | |
| Ying_Nucleobase14 | b1783 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -3.6 | |
| Ying_Nucleobase14 | b1784 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -3.2 | |
| Ying_Nucleobase14 | b2042 | predicted subunit with GalU (NCBI) | +1.2 | |
| Ying_Nucleobase14 | b2067 | predicted diguanylate cyclase, GGDEF domain signalling protein (NCBI) | +1.4 | |
| Ying_Nucleobase14 | b2101 | predicted DNA-binding transcriptional regulator (NCBI) | +3.9 | |
| Ying_Nucleobase14 | b2127 | DNA-binding transcriptional regulator (NCBI) | +1.9 | |
| Ying_Nucleobase14 | b2151 | DNA-binding transcriptional repressor (NCBI) | -1.1 | Yes |
| Ying_Nucleobase14 | b2218 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | +1.7 | |
| Ying_Nucleobase14 | b2290 | aspartate aminotransferase (NCBI) | -3.7 | |
| Ying_Nucleobase14 | b2303 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | +1.0 | |
| Ying_Nucleobase14 | b2393 | nucleoside (except guanosine) transporter (NCBI) | -2.4 | Yes |
| Ying_Nucleobase14 | b2421 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | variable | |
| Ying_Nucleobase14 | b2475 | hypothetical protein (NCBI) | -1.7 | |
| Ying_Nucleobase14 | b2536 | predicted 3-phenylpropionic transporter (NCBI) | variable | |
| Ying_Nucleobase14 | b2603 | hypothetical protein (NCBI) | -2.6 | |
| Ying_Nucleobase14 | b2707 | DNA-bindng transcriptional repressor (NCBI) | -1.6 | |
| Ying_Nucleobase14 | b2964 | transport of nucleosides, permease protein (VIMSS) | -3.6 | |
| Ying_Nucleobase14 | b3094 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | -1.4 | |
| Ying_Nucleobase14 | b3385 | phosphoglycolate phosphatase (NCBI) | -1.6 | |
| Ying_Nucleobase14 | b3601 | DNA-binding repressor (NCBI) | -2.3 | |
| Ying_Nucleobase14 | b3831 | uridine phosphorylase (NCBI) | -3.5 | Yes |
| Ying_Nucleobase14 | b3908 | superoxide dismutase, manganese (VIMSS) | -1.7 | |
| Ying_Nucleobase14 | b3934 | DNA-binding transcriptional dual regulator (NCBI) | +4.4 | Yes |
| Ying_Nucleobase14 | b4109 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | +1.4 | |
| Ying_Nucleobase14 | b4110 | orf, hypothetical protein (VIMSS) | +1.5 | |
| Ying_Nucleobase14 | b4135 | orf, hypothetical protein (VIMSS) | +1.1 | |
| Ying_Nucleobase14 | b4141 | predicted transporter (NCBI) | +1.1 | |
| Ying_Nucleobase14 | b4190 | predicted hydrolase (NCBI) | +1.1 | |
| Ying_Nucleobase14 | b4260 | leucyl aminopeptidase (NCBI) | +2.7 | |
| Ying_Nucleobase14 | b4324 | DNA-binding transcriptional repressor (NCBI) | -1.2 | |
| Ying_Nucleobase14 | b4380 | hypothetical protein (NCBI) | +1.3 | |
| Ying_Nucleobase14 | b4381 | deoxyribose-phosphate aldolase (NCBI) | +1.9 | |
| Ying_Nucleobase14 | b4383 | phosphopentomutase (NCBI) | -8.4 | Yes |
| Ying_Nucleobase14 | b4384 | purine nucleoside phosphorylase (NCBI) | -1.7 | Yes |
| Ying_Nucleobase14 | b4391 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | +1.5 | |
| Ying_Nucleobase14 | b4395 | phosphoglycerate mutase (NCBI) | -1.9 | |
| Ying_Nucleobase14 | b1660 | predicted transporter (NCBI) | -1.7 | Yes |
| Ying_Nucleobase14 | b1663 | multidrug efflux protein NorM (NCBI) | +2.3 | |
| Ying_Nucleobase14 | b4256 | predicted acetyltransferase (NCBI) | +1.2 | |
| Ying_OrganicAcid7 | b0189 | orf, hypothetical protein (VIMSS) | -1.4 | |
| Ying_OrganicAcid7 | b0334 | 2-methylcitrate dehydratase (NCBI) | variable | |
| Ying_OrganicAcid7 | b1188 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.4 | Yes |
| Ying_OrganicAcid7 | b1190 | alanine racemase (NCBI) | +2.2 | |
| Ying_OrganicAcid7 | b1191 | orf, hypothetical protein (VIMSS) | +1.2 | |
| Ying_OrganicAcid7 | b1285 | modulator of Rnase II stability (NCBI) | -3.1 | |
| Ying_OrganicAcid7 | b1294 | predicted antimicrobial peptide transporter subunit (NCBI) | +1.5 | |
| Ying_OrganicAcid7 | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | +2.7 | |
| Ying_OrganicAcid7 | b1479 | NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) | -1.2 | |
| Ying_OrganicAcid7 | b1702 | phosphoenolpyruvate synthase (NCBI) | -2.4 | Yes |
| Ying_OrganicAcid7 | b1783 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.3 | Yes |
| Ying_OrganicAcid7 | b2029 | 6-phosphogluconate dehydrogenase (NCBI) | -1.8 | |
| Ying_OrganicAcid7 | b2603 | hypothetical protein (NCBI) | -2.0 | |
| Ying_OrganicAcid7 | b3232 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | -2.3 | |
| Ying_OrganicAcid7 | b3528 | C4 dicarboxylate/orotate:H+ symporter (DctA) (from data) | -1.9 | Yes |
| Ying_OrganicAcid7 | b3917 | sulfate transporter subunit (NCBI) | -1.1 | |
| Ying_OrganicAcid7 | b3966 | vitamin B12/cobalamin outer membrane transporter (NCBI) | -1.1 | |
| Ying_OrganicAcid7 | b4030 | phosphate-starvation-inducible protein PsiE (NCBI) | +1.4 | |
| Ying_OrganicAcid7 | b4054 | tyrosine aminotransferase, tyrosine-repressible, PLP-dependent (NCBI) | -3.2 | |
| Ying_OrganicAcid7 | b4124 | DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) | -1.6 | Yes |
| Ying_OrganicAcid7 | b4125 | sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) | -1.7 | |
| Ying_OrganicAcid7 | b3572 | valine--pyruvate transaminase (NCBI) | -1.7 | |
| Ying_Others16 | b0209 | hypothetical protein (NCBI) | +1.3 | |
| Ying_Others16 | b0382 | hypothetical protein (NCBI) | +1.4 | |
| Ying_Others16 | b0385 | predicted diguanylate cyclase (NCBI) | +2.2 | |
| Ying_Others16 | b0610 | nucleoside diphosphate kinase regulator (NCBI) | +1.3 | |
| Ying_Others16 | b0707 | hypothetical protein (NCBI) | +1.7 | |
| Ying_Others16 | b1037 | outer membrane lipoprotein (NCBI) | +4.4 | |
| Ying_Others16 | b1039 | predicted transport protein (NCBI) | +2.3 | |
| Ying_Others16 | b1040 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | +5.6 | |
| Ying_Others16 | b1041 | curlin nucleator protein, minor subunit in curli complex (NCBI) | +1.8 | |
| Ying_Others16 | b1042 | cryptic curlin major subunit (NCBI) | +3.1 | |
| Ying_Others16 | b1222 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | +3.1 | |
| Ying_Others16 | b1284 | predicted DNA-binding transcriptional regulator (NCBI) | +1.4 | |
| Ying_Others16 | b1341 | orf, hypothetical protein (VIMSS) | +5.4 | |
| Ying_Others16 | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | +1.5 | Yes |
| Ying_Others16 | b1584 | spermidine N1-acetyltransferase (NCBI) | +4.8 | Yes |
| Ying_Others16 | b1783 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.6 | |
| Ying_Others16 | b1784 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.9 | |
| Ying_Others16 | b2127 | DNA-binding transcriptional regulator (NCBI) | +5.8 | |
| Ying_Others16 | b2216 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | +3.4 | |
| Ying_Others16 | b2218 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | +4.6 | |
| Ying_Others16 | b2664 | putative transcriptional regulator (VIMSS) | +3.5 | |
| Ying_Others16 | b3156 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | variable | |
| Ying_Others16 | b3423 | DNA-binding transcriptional repressor (NCBI) | variable | |
| Ying_Others16 | b3454 | ATP-binding component of leucine transport (VIMSS) | +1.7 | |
| Ying_Others16 | b3752 | ribokinase (NCBI) | +3.5 | |
| Ying_Others16 | b3934 | DNA-binding transcriptional dual regulator (NCBI) | +2.2 | |
| Ying_all64 | b2290 | aspartate aminotransferase (NCBI) | -1.7 | |
| Ying_all64 | b3743 | DNA-binding transcriptional dual regulator (NCBI) | -1.4 | |
| Ying_all64 | b4208 | D-alanine/D-serine/glycine transporter (NCBI) | -7.0 | Yes |
| Ying_sugar7 | b0388 | shikimate kinase II (NCBI) | -2.3 | |
| Ying_sugar7 | b0661 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | +1.1 | |
| Ying_sugar7 | b0852 | ribosomal protein S6 modification protein (NCBI) | +1.5 | |
| Ying_sugar7 | b0863 | arginine transporter subunit (NCBI) | -1.5 | |
| Ying_sugar7 | b1037 | outer membrane lipoprotein (NCBI) | +1.0 | |
| Ying_sugar7 | b1188 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.3 | |
| Ying_sugar7 | b1285 | modulator of Rnase II stability (NCBI) | -7.6 | |
| Ying_sugar7 | b1341 | orf, hypothetical protein (VIMSS) | +1.1 | |
| Ying_sugar7 | b1687 | predicted FAD-linked oxidoreductase (NCBI) | -1.2 | |
| Ying_sugar7 | b1783 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.3 | |
| Ying_sugar7 | b1821 | orf, hypothetical protein (VIMSS) | -4.3 | |
| Ying_sugar7 | b2290 | aspartate aminotransferase (NCBI) | -3.0 | |
| Ying_sugar7 | b2603 | hypothetical protein (NCBI) | -6.5 | |
| Ying_sugar7 | b2685 | multidrug efflux system (NCBI) | -1.7 | |
| Ying_sugar7 | b2686 | multidrug efflux system protein (NCBI) | -1.5 | |
| Ying_sugar7 | b3252 | conserved inner membrane protein (NCBI) | -1.3 | |
| Ying_sugar7 | b3359 | bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase (NCBI) | -1.1 | Yes |
| Ying_sugar7 | b3643 | ribonuclease PH (NCBI) | +3.3 | Yes |
| Ying_sugar7 | b3917 | sulfate transporter subunit (NCBI) | -1.4 | |
| Ying_sugar7 | b4141 | predicted transporter (NCBI) | +1.8 | |
| Ying_sugar7 | b4395 | phosphoglycerate mutase (NCBI) | variable | |
| Ying_sugar7 | b4553 | hypothetical protein (NCBI) | -1.1 | |
| Ying_sugar7 | b3779 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | -1.5 | |
| a-Ketoglutaric acid disodium salt hydrate | b0050 | hypothetical protein (NCBI) | +1.4 | |
| a-Ketoglutaric acid disodium salt hydrate | b0209 | hypothetical protein (NCBI) | -1.8 | |
| a-Ketoglutaric acid disodium salt hydrate | b0382 | hypothetical protein (NCBI) | +2.9 | |
| a-Ketoglutaric acid disodium salt hydrate | b0390 | hypothetical protein (NCBI) | -4.0 | |
| a-Ketoglutaric acid disodium salt hydrate | b0584 | iron-enterobactin outer membrane transporter (NCBI) | -3.2 | |
| a-Ketoglutaric acid disodium salt hydrate | b0775 | biotin synthase (NCBI) | -1.8 | |
| a-Ketoglutaric acid disodium salt hydrate | b0966 | DNA-binding protein, hemimethylated (RefSeq) | -1.3 | |
| a-Ketoglutaric acid disodium salt hydrate | b1066 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | +2.4 | |
| a-Ketoglutaric acid disodium salt hydrate | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | +3.5 | |
| a-Ketoglutaric acid disodium salt hydrate | b1517 | hypothetical protein (NCBI) | -1.1 | |
| a-Ketoglutaric acid disodium salt hydrate | b1584 | spermidine N1-acetyltransferase (NCBI) | -2.0 | |
| a-Ketoglutaric acid disodium salt hydrate | b1844 | exodeoxyribonuclease X (NCBI) | -1.5 | |
| a-Ketoglutaric acid disodium salt hydrate | b2463 | malic enzyme (NCBI) | -1.7 | |
| a-Ketoglutaric acid disodium salt hydrate | b2587 | alpha-ketoglutarate transporter (NCBI) | -5.5 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | b2700 | competence damage-inducible protein A (NCBI) | -2.0 | |
| a-Ketoglutaric acid disodium salt hydrate | b2707 | DNA-bindng transcriptional repressor (NCBI) | -1.8 | |
| a-Ketoglutaric acid disodium salt hydrate | b3131 | DNA-binding transcriptional dual regulator (NCBI) | +1.6 | |
| a-Ketoglutaric acid disodium salt hydrate | b3157 | predicted lipid carrier protein (NCBI) | +2.0 | |
| a-Ketoglutaric acid disodium salt hydrate | b3232 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | -2.3 | |
| a-Ketoglutaric acid disodium salt hydrate | b3284 | hypothetical protein (NCBI) | -1.3 | |
| a-Ketoglutaric acid disodium salt hydrate | b3292 | zinc-responsive transcriptional regulator (NCBI) | -1.8 | |
| a-Ketoglutaric acid disodium salt hydrate | b3355 | predicted phosphoribulokinase (NCBI) | -1.2 | |
| a-Ketoglutaric acid disodium salt hydrate | b3385 | phosphoglycolate phosphatase (NCBI) | -1.1 | |
| a-Ketoglutaric acid disodium salt hydrate | b3494 | universal stress protein UspB (NCBI) | +2.0 | |
| a-Ketoglutaric acid disodium salt hydrate | b3601 | DNA-binding repressor (NCBI) | -2.3 | |
| a-Ketoglutaric acid disodium salt hydrate | b3752 | ribokinase (NCBI) | +2.4 | |
| a-Ketoglutaric acid disodium salt hydrate | b3908 | superoxide dismutase, manganese (VIMSS) | -1.3 | |
| a-Ketoglutaric acid disodium salt hydrate | b3926 | glycerol kinase (NCBI) | -1.2 | |
| a-Ketoglutaric acid disodium salt hydrate | b4057 | hypothetical protein (NCBI) | -1.4 | |
| a-Ketoglutaric acid disodium salt hydrate | b4390 | probable nadAB transcriptional regulator (VIMSS) | +1.3 | |
| a-Ketoglutaric acid disodium salt hydrate | b4395 | phosphoglycerate mutase (NCBI) | -2.4 | |
| a-Ketoglutaric acid disodium salt hydrate | b4472 | conserved membrane protein, predicted transporter (NCBI) | -1.4 | |
| casamino acids | b0120 | S-adenosylmethionine decarboxylase proenzyme (NCBI) | -1.3 | |
| casamino acids | b0134 | 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) | -1.2 | |
| casamino acids | b1422 | putative transcriptional regulator LYSR-type (VIMSS) | +1.5 | |
| casamino acids | b1612 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | -2.0 | |
| casamino acids | b1704 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible (NCBI) | -2.6 | Yes |
| casamino acids | b1744 | succinylglutamate desuccinylase (NCBI) | -1.2 | |
| casamino acids | b3232 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | -1.6 | Yes |
| casamino acids | b3528 | C4 dicarboxylate/orotate:H+ symporter (DctA) (from data) | -1.1 | |