Specific Phenotypes for Bacteroides stercoris CC31F in carbon source experiments

Condition Gene Description Fitness Cons.
Arabinoxylan (Rye Flour) HMPREF1181_RS05530 polysaccharide lyase +2.0  
B-glucan from yeast HMPREF1181_RS05500 DUF5115 domain-containing protein -1.1  
Beta-Lactose HMPREF1181_RS06030 FecR family protein +1.9  
Beta-Lactose HMPREF1181_RS06435 DUF4981 domain-containing protein -1.6 Yes
Beta-Lactose HMPREF1181_RS08055 RagB/SusD family nutrient uptake outer membrane protein +1.6  
Chitin from shrimp shells HMPREF1181_RS00825 FecR family protein +1.8  
Chitin from shrimp shells HMPREF1181_RS03865 EpsG family protein +1.1  
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS01410 TonB-dependent receptor -5.0 Yes
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS01620 DUF4861 domain-containing protein -1.7 Yes
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS02080 deoxyribose-phosphate aldolase -3.4 Yes
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS02300 chondroitinase -1.1  
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS02320 RagB/SusD family nutrient uptake outer membrane protein -1.5  
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS02325 TonB-dependent receptor -1.2  
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS02330 arylsulfatase +2.7  
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS02340 aminoglycoside phosphotransferase family protein -4.9 Yes
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS02345 hypothetical protein -3.9 Yes
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS02380 hotdog fold thioesterase +1.3  
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS02390 sulfatase -4.9 Yes
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS04610 glucosamine-6-phosphate deaminase -1.3  
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS04690 anaerobic sulfatase-maturation protein -7.2  
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS08940 PTS sugar transporter subunit IIC -3.4  
Chondroitin sulfate A sodium salt from bovine trachea HMPREF1181_RS08945 5-dehydro-4-deoxy-D-glucuronate isomerase -3.4 Yes
D-Galactose HMPREF1181_RS07380 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit -1.3  
D-Galactose HMPREF1181_RS16725 hypothetical protein -1.2  
D-Galacturonic Acid monohydrate HMPREF1181_RS02615 sodium-translocating pyrophosphatase -2.6  
D-Galacturonic Acid monohydrate HMPREF1181_RS03500 L-rhamnose isomerase +1.3  
D-Galacturonic Acid monohydrate HMPREF1181_RS07550 hypothetical protein -1.4  
D-Galacturonic Acid monohydrate HMPREF1181_RS08305 aconitate hydratase -2.0 Yes
D-Galacturonic Acid monohydrate HMPREF1181_RS15425 glycosyltransferase +1.4  
D-Glucosamine Hydrochloride HMPREF1181_RS06690 response regulator -1.6  
D-Glucosamine Hydrochloride HMPREF1181_RS06710 DUF4958 family protein +4.4  
D-Glucosamine Hydrochloride HMPREF1181_RS06715 TonB-dependent receptor +1.7 Yes
D-Glucosamine Hydrochloride HMPREF1181_RS06730 heparinase II/III family protein +3.8  
D-Glucosamine Hydrochloride HMPREF1181_RS06745 ROK family protein -1.6 Yes
D-Glucosamine Hydrochloride HMPREF1181_RS13955 murein L,D-transpeptidase catalytic domain family protein +1.3  
D-Glucose HMPREF1181_RS07925 aminopeptidase P family protein +1.6  
D-Glucose HMPREF1181_RS16250 formate-dependent phosphoribosylglycinamide formyltransferase -1.4  
D-Mannose HMPREF1181_RS07925 aminopeptidase P family protein +1.7  
D-Xylose HMPREF1181_RS14640 D-xylose transporter XylE -5.5 Yes
D-Xylose HMPREF1181_RS14645 xylose isomerase -5.0 Yes
D-Xylose HMPREF1181_RS14650 xylulokinase -6.1 Yes
D-Xylose HMPREF1181_RS14655 NUDIX hydrolase -2.6 Yes
Dextrin from potato starch HMPREF1181_RS00280 16S ribosomal RNA -1.5  
Dextrin from potato starch HMPREF1181_RS02420 ribonuclease III -1.8  
Dextrin from potato starch HMPREF1181_RS06820 S8 family serine peptidase -1.7  
Dextrin from potato starch HMPREF1181_RS13235 glycoside hydrolase family 13 protein +2.8  
Glucomannan (konjac) HMPREF1181_RS03140 sodium-dependent transporter +1.6  
Glucomannan (konjac) HMPREF1181_RS14400 hypothetical protein +1.4  
Glucomannan (konjac) HMPREF1181_RS15960 V-type ATP synthase subunit A +1.7  
Glucomannan (konjac) HMPREF1181_RS15975 V-type ATP synthase subunit I +2.2  
Inulin from chicory HMPREF1181_RS05685 DUF4980 domain-containing protein -4.0  
Inulin from chicory HMPREF1181_RS05700 RagB/SusD family nutrient uptake outer membrane protein -3.1 Yes
Inulin from chicory HMPREF1181_RS07925 aminopeptidase P family protein +1.8  
Levan - from Erwinia herbicola HMPREF1181_RS05685 DUF4980 domain-containing protein -2.5  
Levan - from Erwinia herbicola HMPREF1181_RS05700 RagB/SusD family nutrient uptake outer membrane protein -1.8  
Locust bean gum HMPREF1181_RS01275 acetate--CoA ligase family protein -1.8  
Locust bean gum HMPREF1181_RS01680 histidine-type phosphatase -1.8  
Locust bean gum HMPREF1181_RS02360 efflux RND transporter permease subunit -1.6  
Locust bean gum HMPREF1181_RS05525 glycosyl hydrolase 53 family protein -3.4  
Locust bean gum HMPREF1181_RS06160 dCMP deaminase family protein -3.6  
Locust bean gum HMPREF1181_RS08060 TonB-dependent receptor +1.1  
Locust bean gum HMPREF1181_RS08810 glycoside hydrolase family 28 protein +1.6  
Locust bean gum HMPREF1181_RS08850 DUF5123 domain-containing protein -1.6  
Locust bean gum HMPREF1181_RS17340 hypothetical protein -1.1  
Mucin from porcine stomach type III HMPREF1181_RS02080 deoxyribose-phosphate aldolase -2.2  
Mucin from porcine stomach type III HMPREF1181_RS08945 5-dehydro-4-deoxy-D-glucuronate isomerase -1.5  
Mucin from porcine stomach type III HMPREF1181_RS11845 ABC transporter substrate-binding protein -2.0  
Mucin from porcine stomach type III HMPREF1181_RS11850 hypothetical protein -1.2  
Mucin from porcine stomach,Type II HMPREF1181_RS05500 DUF5115 domain-containing protein +1.0  
Mucin from porcine stomach,Type II HMPREF1181_RS06785 hypothetical protein +1.3  
Mucin from porcine stomach,Type II HMPREF1181_RS16185 ATP-binding protein -1.0  
N-Acetyl-D-Glucosamine HMPREF1181_RS04610 glucosamine-6-phosphate deaminase -1.3  
N-Acetyl-D-Glucosamine HMPREF1181_RS06030 FecR family protein +1.5  
Pectic galactan from potato HMPREF1181_RS03495 rhamnulokinase -1.7  
Pectic galactan from potato HMPREF1181_RS03500 L-rhamnose isomerase -1.6  
Pectic galactan from potato HMPREF1181_RS05825 hypothetical protein -1.5  
Pectic galactan from potato HMPREF1181_RS08630 glycosyltransferase family 2 protein -2.1  
Pectic galactan from potato HMPREF1181_RS15430 glycosyltransferase +1.2  
Pectin from citrus peel HMPREF1181_RS05945 DUF4836 family protein -1.2  
Pectin from citrus peel HMPREF1181_RS08930 pectinesterase -1.5  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS02970 TonB-dependent receptor +1.7  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS03120 cation:proton antiporter -2.0  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS03275 anaerobic glycerol-3-phosphate dehydrogenase subunit A +2.1  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS03525 helix-turn-helix transcriptional regulator +1.6  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS05630 excinuclease ABC subunit UvrA +1.1  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS05815 alkaline phosphatase family protein -1.7  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS06125 Crp/Fnr family transcriptional regulator -1.6  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS06230 YitT family protein +1.3  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS06855 tRNA (guanosine(46)-N7)-methyltransferase TrmB +1.2  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS07230 hypothetical protein +1.9  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS08035 RNA degradosome polyphosphate kinase +1.1  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS08630 glycosyltransferase family 2 protein -1.6  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS08710 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB +1.6  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS08820 glycosyl hydrolase 43 family protein -5.0  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS08830 glycoside hydrolase family 95 protein -3.6  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS14640 D-xylose transporter XylE -1.5  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS14650 xylulokinase -2.5  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1181_RS15535 hypothetical protein -1.8  
Sodium pectate HMPREF1181_RS06640 MotA/TolQ/ExbB proton channel family protein -1.4  
a-Cyclodextrin HMPREF1181_RS00810 DUF4369 domain-containing protein +1.3  
a-Cyclodextrin HMPREF1181_RS00835 SusD/RagB family nutrient-binding outer membrane lipoprotein +1.4  
a-Cyclodextrin HMPREF1181_RS00890 calcium-translocating P-type ATPase, PMCA-type +1.8  
a-Cyclodextrin HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -1.7  
a-Cyclodextrin HMPREF1181_RS01835 sulfate permease -1.4  
a-Cyclodextrin HMPREF1181_RS03140 sodium-dependent transporter -1.6  
a-Cyclodextrin HMPREF1181_RS03580 hypothetical protein +3.7  
a-Cyclodextrin HMPREF1181_RS03685 PAS domain-containing protein +1.6  
a-Cyclodextrin HMPREF1181_RS04950 YIP1 family protein -1.7  
a-Cyclodextrin HMPREF1181_RS06140 large-conductance mechanosensitive channel protein MscL +2.4  
a-Cyclodextrin HMPREF1181_RS07830 NADP-dependent malic enzyme -2.1  
a-Cyclodextrin HMPREF1181_RS08600 uracil-DNA glycosylase -1.6  
a-Cyclodextrin HMPREF1181_RS08800 SAM-dependent methyltransferase +1.6  
a-Cyclodextrin HMPREF1181_RS09105 hypothetical protein -1.5  
a-Cyclodextrin HMPREF1181_RS09415 tetratricopeptide repeat protein -1.3  
a-Cyclodextrin HMPREF1181_RS10730 DUF4943 family protein -1.5  
a-Cyclodextrin HMPREF1181_RS11965 DUF5606 domain-containing protein -1.9  
a-Cyclodextrin HMPREF1181_RS11975 YbbR-like domain-containing protein +4.0  
a-Cyclodextrin HMPREF1181_RS12140 fimbrillin family protein +1.8  
a-Cyclodextrin HMPREF1181_RS12420 polyamine ABC transporter ATP-binding protein -1.7  
a-Cyclodextrin HMPREF1181_RS13655 TIR domain-containing protein +2.4  
a-Cyclodextrin HMPREF1181_RS13660 toll/interleukin-1 receptor domain-containing protein +3.0  
a-Cyclodextrin HMPREF1181_RS13665 hypothetical protein +3.3  
a-Cyclodextrin HMPREF1181_RS16000 threonine/serine exporter family protein -1.3  
b-Glucan from Beet (1,2-b-Glucan) HMPREF1181_RS02960 beta-glucosidase BglX -3.1 Yes
b-Glucan from Beet (1,2-b-Glucan) HMPREF1181_RS02965 RagB/SusD family nutrient uptake outer membrane protein -2.1 Yes
b-Glucan from Beet (1,2-b-Glucan) HMPREF1181_RS02970 TonB-dependent receptor -2.4 Yes
beta-Cyclodextrin HMPREF1181_RS00835 SusD/RagB family nutrient-binding outer membrane lipoprotein +3.6  
beta-Cyclodextrin HMPREF1181_RS03175 GNAT family N-acetyltransferase +1.4  
beta-Cyclodextrin HMPREF1181_RS07170 hypothetical protein +2.3  
beta-Cyclodextrin HMPREF1181_RS07190 phage tail protein +2.3  
beta-Cyclodextrin HMPREF1181_RS07205 phage tail tape measure protein +1.2  
beta-Cyclodextrin HMPREF1181_RS08800 SAM-dependent methyltransferase +3.6  
beta-Cyclodextrin HMPREF1181_RS10885 RidA family protein +2.3  
beta-Cyclodextrin HMPREF1181_RS11975 YbbR-like domain-containing protein +2.7  
beta-Cyclodextrin HMPREF1181_RS12460 cytochrome ubiquinol oxidase subunit I +6.2  
beta-Cyclodextrin HMPREF1181_RS13655 TIR domain-containing protein +2.3  
beta-Cyclodextrin HMPREF1181_RS13660 toll/interleukin-1 receptor domain-containing protein +2.4  
beta-Cyclodextrin HMPREF1181_RS13665 hypothetical protein +3.0